mRNA_P-lacustris_contig1185.1404.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: A0A6H5JCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF3_9PHAE) HSP 1 Score: 406 bits (1044), Expect = 1.480e-125 Identity = 262/561 (46.70%), Postives = 312/561 (55.61%), Query Frame = 3
Query: 72 KHHGVAAPRAAEEISEVFNHNGDI---PAKGGGNLPKNQISDAPLSSRQRQQRCGRCC----------SRRWLSFSERMKVRHFFIVALLVLAGAFSLRGWRAAMMIDLGQFGARRWTTIPEGDQTHGLDGS--SQCEWEPNGPLMFNLQHRKENAEP-----GHWFHVAERFIGRRAEFKAYFSGMAGTDVYLKDSNTAWTSTLSPMTRLLLIAGLSGAGARSVHLIDGHHASFAFSSSPSESSNDEGGAGVGGAGALRGGGIGKQIAVGPRAGQVGVLRLDEIGHKSQFVVSTEQPLPYRLTVSEPVSPIRRGWQKWQG-----CCRCGGRGARRSA*SLWGTLGAGGKRGRSGFRARKT-----------CEISCAR*----ITSAPSRG*GRRRGEAEAERNG-----------KGLMTETRGRGSRGLYSTVV-GVEGRRTSAGRGLGVGIKKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLIPIEGWYLPSMSCYSHRHFK 1598
KH G+ APRAA +IS NGD+ PAK G + P S Q SRRW F ER + R V LL+LAGAFSLRGWRAAMMID+G FG + WT PE D LD +QC+WEPNGPLMFNL H K++A+ HWFHVAE FIGRR+EFK +F+GM+GTDVY+KDS+T+W S LSPMTRLL+ AGLS G VH +DG+HASF+F ALRGG +I PR GQ GVL LDEIG+ SQFVVSTEQPLP RL VS P+SP+RR W G G G R T+G G++ F + C I+ R GRR + E G + GRGSRGLY+TVV G E GRG G G KK QPEPRKL+IYQRDRNR+LLK+ EL DELWIRLG +GW V EIVHD++RHPCEL+++LAGAD L+TAHGFQ LS G L+ Y H+++K
Sbjct: 6 KHRGMPAPRAAGDISAALRDNGDMMSSPAKNGSTKRRQPSDSTPHVSSPHQXXXXXXXXXXXXDCDWRSRRWPPFLERRRTRSSGAVFLLLLAGAFSLRGWRAAMMIDMGPFGVQPWTGSPETDDPQ-LDDEDRNQCDWEPNGPLMFNLHHSKQHADEYRESASHWFHVAECFIGRRSEFKEHFTGMSGTDVYVKDSDTSWNSRLSPMTRLLIAAGLSSVGVHDVHFVDGNHASFSFXXXXXXXXXXXXXXXX--XTALRGGISSSEIGDSPRPGQTGVLHLDEIGYMSQFVVSTEQPLPDRLAVSAPLSPVRR----WDGGGVENVAIEGRGGGARECVKFVDTVGDWGQKRDKWFPEEEDPRELLRALDSFCPIAWLRKEEXXXXXXXXXXXGRRGVDGGDEGTGALVSPLPAGAGRDEFRGAGGRGSRGLYATVVAGPERGAAGGGRGFGAGAKKRQPEPRKLVIYQRDRNRKLLKTEELMDELWIRLGHLGWAVEEIVHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLL---------FEVYPHKYYK 550
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI) HSP 1 Score: 290 bits (741), Expect = 5.840e-84 Identity = 186/397 (46.85%), Postives = 232/397 (58.44%), Query Frame = 3
Query: 504 HWFHVAERFIGRRAEFKAYFSGMAGTDVYLKDSNTAWTSTLSPMTRLLLIAGLSGAGARSVHLIDGHHASFAFSSSPSESSNDEGGAGVGGAGALRGGGIGK-QIAVGPRAGQVGVLRLDEIGHKSQFVVSTEQPLPYRLTVSEPVSPIRRGWQKWQG-----CCRCGGRGARRSA*SLWGTLGAGGKRGRSGFRARKT-----------CEISCAR*--ITSAPSRG*GRRRGEAEAERNGKGLMT---------ETRG---RGSRGLYSTVVGVEGRR-TSAGRGLGVGIKKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLIPIEGWYLPSMSCYSHRHFK 1598
HWFHVAE FIGRR+EFK +F+GM+GTDVY+KDS+T+W S LSPMTRLL+ AGLS G R VH +DG+HASF++++ S ALRGG +I PR GQ GVL LDEIG+ SQFVVSTEQPLP RL VS P+SP+RR W G G G R T+G G++ F + C I+ R ++G + + GL++ E RG RGSRGLY+TVVG R GRG G KK QPEPRKL+IYQRDR+R+LLK+ EL DELWIRLG +GW V EI+HD++RHPCEL+++LAGAD L+TAHGFQ LS G L+ Y H+++K
Sbjct: 8 HWFHVAECFIGRRSEFKEHFAGMSGTDVYVKDSDTSWNSRLSPMTRLLVAAGLSSVGVRDVHFVDGNHASFSYAAPSSXXXXXXXXXXX--XXALRGGSSSSSEIGDSPRPGQTGVLHLDEIGYMSQFVVSTEQPLPDRLAVSAPLSPVRR----WDGGGAEDVAIEGRGGGARECVKFVDTVGDWGQKRDKWFPEEEDPRELLRALDSFCPIAWLRKEEXXXXXXXXXXGKKGVDDGDEGTGGLVSPLPAGAGGDEFRGAGGRGSRGLYATVVGGPERGFAGGGRGFRAGAKKRQPEPRKLVIYQRDRDRKLLKTEELMDELWIRLGHLGWAVKEIIHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLL---------FEVYPHKYYK 389
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: D8LD62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD62_ECTSI) HSP 1 Score: 107 bits (267), Expect = 4.520e-21 Identity = 112/375 (29.87%), Postives = 165/375 (44.00%), Query Frame = 3
Query: 585 VYLKDSNTAWTSTLSPMTRLLLIAGLSGAGARSVHLIDGHHASFAFSSSPSE--------SSNDEGGA----------------------------GVGGAGALRGGGIGKQIAVGPRAGQVGVLRLDEIGHKSQFVVSTEQPLPYRLTVSEPV-----------SPIRRGWQKWQ-GCCRCGG--------RGARRSA*SLWGTLGAGGKRGRSGFRARKTCEISCAR*ITSAPSRG*GRRRGEAEAERNGKGLMTETRGRGSRGLYSTVVGVEGRRTSAGRGLGVGIKKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLI 1541
VYL+ + W + LSPM+RLL++ GL+ GA +V +D ASF+++S E SS GA + AG L G G PR GQVG+L D G S+FV+S LP RLTV+ V +P G + G + GG RG R + +GG++G AR E C + + + GE+ +R+ + + R + R+ G G G+ R++++YQRD+NR++L + ++ ++L RLG GW V ++HD+DRHPCEL+E LAG D L+T HGFQ L G L+
Sbjct: 7 VYLQVLDPTWMAHLSPMSRLLIVVGLTSVGADNVRFVDADRASFSYTSGDPEQPAQQPRISSTRTAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTAGEL-GDGEXXXXXXXPRPGQVGLLEFDPRGRGSEFVLSPALSLPERLTVTADVVSPAYNPPAAAAPAESGXXXXRPGAAQTGGAPPVTRAVRGGRAG-------VSSGGQQGEE-TSAR---EPVCVKYLDTV---------GESVVQRS-EWFPSPEDAASLRRAIDAYCPLSFLRSEEGEGEEEGV-------RRVLLYQRDQNRQILHADKVVEDLQERLGG-GWIVDMMMHDSDRHPCELVETLAGVDVLLTPHGFQSMLGLFMRPGSLL 351
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.780e-12 Identity = 99/355 (27.89%), Postives = 141/355 (39.72%), Query Frame = 3
Query: 624 LSPMTRLLLIAGLSGAGARSVHLIDGHHASFAFSSSPSE--------SSNDEGGAGVGGAGALRGGGIGKQIAVG----------------------------PRAGQVGVLRLDEIGHKSQFVVSTEQPLPYRLTVS-EPVSPIRR------------GWQKWQGCCRCGGRGARRSA*SLWGTLGAGGKRGRSGFRARKTCEISCAR*ITSAPSRG*GRRRGEAEAERNGKGLMTETRGRGSRGLYSTVVGVEGRRTSAGRGLGVGIKKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLI 1541
LSPM+RLL++ GL+ GA +V +D ASF+++S E SS GA G PR GQVG+L D G S+FVVS LP RLTV+ + VSP GG++G AR E C + + + GE+ +R+ + + R + R+ G GV R+L++YQRD+NR++L + ++ ++L RLG GW V ++HD+DRHPC L+E LAG D L+T HGFQ L G L+
Sbjct: 4 LSPMSRLLIVVGLTSVGADNVRFVDADRASFSYTSGDPEQPAQQPRISSTQTAGADEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRPGQVGLLEFDPRGRGSEFVVSPALSLPERLTVTADVVSPAYNPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQGDE-TSAR---EPVCVKYLDTV---------GESVVQRS-EWFPSPEDAASLRRAIDAYCPLSFLRSQEGEEEGV---------RRLLLYQRDQNRQILHADKVVEDLQERLGG-GWIVNMMMHDSDRHPCVLVETLAGVDVLLTPHGFQSMLGLFMRPGSLL 334
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: D7FHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW9_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 1.950e-6 Identity = 48/131 (36.64%), Postives = 64/131 (48.85%), Query Frame = 3
Query: 1239 EGRRTSAGRGLGVGIKKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIG--WTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLI----PIEGW---YLPSMSCYSHRHFKVV 1604
EGR + G G G + + ++L+IYQR+ NRRLL L D + + +G W V +IVHDN PC L QL AD L+T HGFQ L G I P + W Y P + RH ++
Sbjct: 494 EGRHAAEKEG-GDGRESSRKRRQRLVIYQRNDNRRLLS---LDDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIM 620
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK) HSP 1 Score: 60.1 bits (144), Expect = 1.980e-5 Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 3
Query: 1296 PEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQ 1502
P K+++YQR+RNR+ + + + L +LG W + ++H DRHPC + E AD TAHGFQ
Sbjct: 295 PPKHKMVVYQRNRNRKFQRFEAMVEALEEQLGP-EWELEVLLHSTDRHPCAMYESFHAADVFYTAHGFQ 362
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: A0A7S2HI54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HI54_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.600e-5 Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 3
Query: 1311 LIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRLSRSGMRGCLI----PIEGWYLPSMSCYSHRHFKVVKGDSGNLNGNTLCWRRLLWGQNVVL 1679
LIIYQRDR+RRL L L RLG W VT ++H + PC L E+L D L+T HGFQ L RG + P + W + ++ + G +G + R W +NV L
Sbjct: 135 LIIYQRDRDRRLELHEVLRKNLRKRLGKT-WNVTVVMHKENLDPCGLWEELRVTDLLLTPHGFQSILLIFMRRGSALFEVFPFKYWKIG---------YRPFANEYGLWHGWSQNSRATSWVKNVAL 251
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Match: A0A482RTA3_9ARCH (DUF563 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA3_9ARCH) HSP 1 Score: 55.5 bits (132), Expect = 3.680e-5 Identity = 33/76 (43.42%), Postives = 40/76 (52.63%), Query Frame = 3
Query: 1284 KKYQPEPRKLIIYQRDRNRRLLKSAELADELWIRLGAIGWTVTEIVHDNDRHPCELIEQLAGADALVTAHGFQVRL 1511
KKY KL+IYQRD +R+LLK + L RL W V ++H DR PC L A L+T HGFQ L
Sbjct: 10 KKY-----KLVIYQRDLSRKLLKQDNVLQMLHSRLDNSKWEVEVVMHIPDRSPCTLHPLFAQTTLLLTPHGFQSML 80 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1185.1404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1185.1404.1 >prot_P-lacustris_contig1185.1404.1 ID=prot_P-lacustris_contig1185.1404.1|Name=mRNA_P-lacustris_contig1185.1404.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=320bp MRESWKHHGVAAPRAAEEISEVFNHNGDIPAKGGGNLPKNQISDAPLSSRback to top mRNA from alignment at P-lacustris_contig1185:22348..32052+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1185.1404.1 ID=mRNA_P-lacustris_contig1185.1404.1|Name=mRNA_P-lacustris_contig1185.1404.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9705bp|location=Sequence derived from alignment at P-lacustris_contig1185:22348..32052+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1185:22348..32052+ >mRNA_P-lacustris_contig1185.1404.1 ID=mRNA_P-lacustris_contig1185.1404.1|Name=mRNA_P-lacustris_contig1185.1404.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1920bp|location=Sequence derived from alignment at P-lacustris_contig1185:22348..32052+ (Pleurocladia lacustris SAG_25_93)back to top |