mRNA_P-lacustris_contig118.1369.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig118.1369.1
Unique NamemRNA_P-lacustris_contig118.1369.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig118.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig118contigP-lacustris_contig118:143681..145270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig118.1369.1prot_P-lacustris_contig118.1369.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig118 143681..145242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.963906-CDS-P-lacustris_contig118:143680..1438391622815490.963906-CDS-P-lacustris_contig118:143680..143839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 143681..143839 -
1693493570.5121443-CDS-P-lacustris_contig118:143680..1438391693493570.5121443-CDS-P-lacustris_contig118:143680..143839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 143681..143839 -
1622815490.9743855-CDS-P-lacustris_contig118:144784..1448991622815490.9743855-CDS-P-lacustris_contig118:144784..144899Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 144785..144899 -
1693493570.5217457-CDS-P-lacustris_contig118:144784..1448991693493570.5217457-CDS-P-lacustris_contig118:144784..144899Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 144785..144899 -
1622815490.9883704-CDS-P-lacustris_contig118:145231..1452421622815490.9883704-CDS-P-lacustris_contig118:145231..145242Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 145232..145242 -
1693493570.529618-CDS-P-lacustris_contig118:145231..1452421693493570.529618-CDS-P-lacustris_contig118:145231..145242Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 145232..145242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.9997094-UTR-P-lacustris_contig118:145242..1452701622815490.9997094-UTR-P-lacustris_contig118:145242..145270Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 145243..145270 -
1693493570.5372777-UTR-P-lacustris_contig118:145242..1452701693493570.5372777-UTR-P-lacustris_contig118:145242..145270Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 145243..145270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig118.1369.1

>prot_P-lacustris_contig118.1369.1 ID=prot_P-lacustris_contig118.1369.1|Name=mRNA_P-lacustris_contig118.1369.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=95bp
MSIKPKKDTLPRVRMDAARKAQCREGATGGIRQTKAKPIPIRRPSHTTAE
RGRCDATRRTSWWNANWNANNGWHSTAMFIRTGFYLPSEAHDPQA
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mRNA from alignment at P-lacustris_contig118:143681..145270-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig118.1369.1 ID=mRNA_P-lacustris_contig118.1369.1|Name=mRNA_P-lacustris_contig118.1369.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1590bp|location=Sequence derived from alignment at P-lacustris_contig118:143681..145270- (Pleurocladia lacustris SAG_25_93)
CACGCACCCCCGTGTGTGCAACATATATATGTCAATCAAGTGAGACTTTT
TTTTTGTGTTTTTCCTATCAACGAAAGAGGCAAACCGACAACAAGAAGAA
GCAAGCACCGCGCAGCGGTAACAATCAACAAGCAGGCTTGCGCTGCTCCG
GATCTTGATGTTTCCCCTTCCCCTTGCCGCTCCCTCGAGCGGATCCACAC
AACATCATGCAGTAGGACTCGTATACAGCAGGGTTGAGGTTCAGAGGCTG
AGTTATATTTAGGCTTTGCGCCGCGTGGATGGAACACCGGCTTCAACCTC
TCGAAATGTGCAAACTAACTACCTTCGTTTGCTTTTCCTCGTCTGTCTGT
TGGTTTGCTTGCCGCAAGAAGACCAAAAAAGGATACGCTGCCTCGGGTTA
GGATGGACGCAGCGCGCAAAGCCCAGTGTCGGGAGGGCGCCACAGGAGGC
ATCAGACAGACAAAGGCCAAACCTATTCCAATCCGGGTGGGTGGCGCTCT
ACTGACTGACGTAGAGCTACAAAGGCTAAGGCCGTTTCTTACGCTGGGAT
ATTTTCAGATTTTATTTGGGGAAATATAAACTGGATATTATTTCGTGGGG
CAGGCCCGAATGATTATTATTGACCTTCTTACGGCACTGGAGACGTATTT
TTTTTCCAGCGCAAAAAAAGGCTGATTCAAGCTTGTTGTGTGGGTACCAG
AAAGCTTCGGTTCACGTTTTCGGCTGGTGCGCGGTCGATAAGACACAGAT
CACCCTGTTTTTGGGACGCCTGCAGAAGGCATGTGTATACCCACACACCA
GTGACTGCTGTTTCTAGATATCGTTGGCGTAAGGCTCTCTCTACGATGCG
TTTATGAATGGTTACACATGCAGAAGTCACAAAAACGGCTCTTTTTTGGT
TTGTTTGGTCTTTTTTGCGGGAGAGAGTGTAGTTGCAATGATTTTTCCCG
ACACGCACAAGACCCCACGGCCCCTAACCTTGGGCGTGCGAGATGGACCA
ACTCTCCACCTCTCTAGGGATAGCCTTGTTATTGCCGTTGCTTCCTCCTT
GGCAAAGTTATGGCCGGAAAACAAACTGATGTGTGTACAAAAATTCCGAC
CTTCAACCAGGCACGCACGCTCTCTGAGAGGACCACATACGTAAAGAGAA
GAGGCTCACCAGGTTGCAGATTGACGTTTTCGGGTCGTGTGCGGCCAACA
AGACGCAGAACGCCCTCAATTTTCGATCCCTGCAGAGGGTTTGTGTATGG
CCTCACGATGTTGACCTATGTTTGGGCAACAGAAGGTGTAGTTCCTCGTT
CTGGCACGAAATGTGAGTTGGCCTGGTTGACCCCCAATTCCTAATCAGCA
AATATGAGCGAGATGGAATTTTATATTGGCCGATTATCCTAGCCGAGTGC
TACGACCCAATACCCCCTCCTTGTCGTCCAGAGGCCAAGTCATACTACCG
CGGAGCGCGGAAGGTGCGACGCGACAAGAAGGACATCTTGGTGGAACGCC
AACTGGAACGCCAACAATGGGTGGCATAGCACCGCGATGTTCATCCGCAC
AGGGTTTTACCTGCCGAGCGAGGCACATGACCCTCAAGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig118:143681..145270-

>mRNA_P-lacustris_contig118.1369.1 ID=mRNA_P-lacustris_contig118.1369.1|Name=mRNA_P-lacustris_contig118.1369.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=570bp|location=Sequence derived from alignment at P-lacustris_contig118:143681..145270- (Pleurocladia lacustris SAG_25_93)
ATGTCAATCAAATGTCAATCAAACCAAAAAAGGATACGCTGCCTCGGGTT
AGGATGGACGCAGCGCGCAAAGCCCAGTGTCGGGAGGGCGCCACAGGAGG
CATCAGACAGACAAAGGCCAAACCTATTCCAATCCGGACCAAAAAAGGAT
ACGCTGCCTCGGGTTAGGATGGACGCAGCGCGCAAAGCCCAGTGTCGGGA
GGGCGCCACAGGAGGCATCAGACAGACAAAGGCCAAACCTATTCCAATCC
GGAGGCCAAGTCATACTACCGCGGAGCGCGGAAGGTGCGACGCGACAAGA
AGGACATCTTGGTGGAACGCCAACTGGAACGCCAACAATGGGTGGCATAG
CACCGCGATGTTCATCCGCACAGGGTTTTACCTGCCGAGCGAGGCACATG
ACCCTCAAGCTAGGCCAAGTCATACTACCGCGGAGCGCGGAAGGTGCGAC
GCGACAAGAAGGACATCTTGGTGGAACGCCAACTGGAACGCCAACAATGG
GTGGCATAGCACCGCGATGTTCATCCGCACAGGGTTTTACCTGCCGAGCG
AGGCACATGACCCTCAAGCT
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