mRNA_P-lacustris_contig118.1367.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig118.1367.1
Unique NamemRNA_P-lacustris_contig118.1367.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: D8LH72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH72_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 1.930e-109
Identity = 163/178 (91.57%), Postives = 171/178 (96.07%), Query Frame = 3
Query:  417 QKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIITAAALTIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATDPEMEETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            +K+KALRGL PVPDDDRAQEIGYAASFMVLVGSDFSWEG+GQVMHYDTTIPTVIG +TAAA+ IDVWKRSGCT KMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEA+RMA DP+M+ET LNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQA AFLQMVRNR
Sbjct:  140 KKEKALRGLVPVPDDDRAQEIGYAASFMVLVGSDFSWEGIGQVMHYDTTIPTVIGAVTAAAVGIDVWKRSGCTSKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEALRMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNR 317          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A835Z355_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z355_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.100e-50
Identity = 87/181 (48.07%), Postives = 126/181 (69.61%), Query Frame = 3
Query:  417 QKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIITAAALTIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATD-PEMEETLLNGN--GVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            ++ +AL+ L P P DDR  ++ +A +F+ +VG DF+ +G+  V+ +D T+P ++ + TA A+ +D+++      + VL G++RLF +DV RESRAEAGAFL  Y+TGLPCFAF+P+ +EA+RM    PE++E   +G   G HR LVWLL+ VAGE L HRQ+I SDPRQA  FL + R R
Sbjct:  127 RRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARER 307          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A7S1XSQ6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSQ6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.550e-35
Identity = 79/187 (42.25%), Postives = 116/187 (62.03%), Query Frame = 3
Query:  417 QKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGV------GQVMHYDTTIPTVIGIITAAALTIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRM--ATDPEMEETL-LNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            ++++ L GLAP+P DDR +E+  + +FM   G     E          ++H    +P  +  ++AAA  ID+W R G T+  + +G++RLF KD ER++R E+ + +  Y+ GLPCFAF+PS  EA+ +  A D  M+E L  N   V+R+LVWLLA VAGE   + Q++ASDPRQA AFL +VR R
Sbjct:   55 RRRRTLEGLAPLPSDDRLKELWLSLAFMGYCGVGVGLEAAIPFTDDPNLLH-SGLLPDAMLALSAAAAGIDIWGRQGKTLLELRSGLSRLFYKDSERDARCESASLVVGYLLGLPCFAFRPSVQEALALLDAEDAAMQEALPRNAATVNRLLVWLLAPVAGEDTKYSQLLASDPRQAAAFLSLVRAR 240          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A4D9D6H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6H3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.140e-32
Identity = 74/174 (42.53%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  441 LAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIITAAALTIDVW---KRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATD-PEMEETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            L+PVP D R  E+    + + +VG   S E VG ++H DTT  +V+      A  + VW   +R G  + + L G+NRLFL+D ER++  +A  FL+AY+ GLPCF F P+ +EA+RM    P   ETL +  G++R+LV+LLA VA E   + Q++ASD RQA A LQ+   R
Sbjct:  145 LSPVPSDARTSELAAGVAALTVVGGALSVEAVGPLLHADTTAASVV---LGGAAVMGVWDLTQRKGQELTLALAGINRLFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVYMGR 315          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: W7U4H7_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4H7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.230e-32
Identity = 74/174 (42.53%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  441 LAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIITAAALTIDVW---KRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATD-PEMEETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            L+PVP D R  E+    + + +VG   S E VG ++H DTT  +V+      A  + VW   +R G  + + L G+NRLFL+D ER++  +A  FL+AY+ GLPCF F P+ +EA+RM    P   ETL +  G++R+LV+LLA VA E   + Q++ASD RQA A LQ+   R
Sbjct:  276 LSPVPSDARTSELAAGVAALTVVGGALSVEAVGPLLHADTTAASVV---LGGAAVMGVWDLTQRKGQELTLALAGINRLFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGR 446          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A7S3XHA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHA8_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.480e-27
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  357 GWAEIFPR--PRAAHSAADGSFQKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIITAAALTIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATD 794
            G  ++F R  PR      D +  + KAL+GL PVP D+R++E+  + +F+ LVG+DF W+ VG + H D+ +P ++       L  D+   +G     V  G+NRL +KD ERE+R EA AFL  Y  GLPCF F+P+ +EA+R+  +
Sbjct:    2 GAGQVFGRALPRLTPLPVDPAA-RAKALKGLEPVPQDERSKEVTASLAFLGLVGADFGWQTVGALQHSDSPLPQLVLAALFGGLAYDLVSGAGQVSGSVAAGLNRLLVKDFEREARCEAAAFLVGYALGLPCFPFRPNVLEALRLVQE 148          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A8J2WW41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW41_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.110e-22
Identity = 69/178 (38.76%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  423 QKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPTVIGIIT-AAALTIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMAT-DPEMEETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            Q +L+    +P DDRA E   A + +  VG     E    +   D   P    ++  AAA   D +   G   K    G++RL  +D  RE+  EA +F   Y  GLPCFAF P+AVEA   A  D  ++E     N V  +LVWL A VA E   HR+++ASDPRQA AFL ++R R
Sbjct:  136 QSSLQQCPELPTDDRATETAAALAALACVGFPALAEVAASITGGDAPGPATFTLVADAAAFGADAYLLGGEIAKKAGAGVDRLLARDARREAECEAASFDLGYRLGLPCFAFSPTAVEAANAAVVDGSVDE-----NRVRALLVWLCAPVACERRKHRKLLASDPRQAVAFLTLLRGR 308          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: A0A7S2KXP3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXP3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.250e-20
Identity = 71/224 (31.70%), Postives = 104/224 (46.43%), Query Frame = 3
Query:  417 QKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIP----TVIGIITAAAL------------------------TIDVWKRSGCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMAT---------DPEME---------ETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR 950
            +KQ+ L  +  +P DDRA EI  A S + +  + F  + + ++       P     +  II+   L                         + +   +G      + G NRLF +D ER   AEA AFL AY  GLPCFAFQP+A+EA  +A          DP +          + LL+  GV ++L+WL A VA E   H Q++ SDPR+A +FL  +RN+
Sbjct:   77 KKQQRLSNVPKIPTDDRASEISSALSVLSVAAACFLADPLAKLFGGTDAGPLPNLVLFAIISVGVLDNFYDVLSGTANLVDKAPKMPEKGNLPLGLGNGQLTSNFVAGFNRLFTEDTERACEAEAAAFLAAYSLGLPCFAFQPNALEAAILAIESSQQPATDDPNINYLPPNSTNLDPLLSNEGVIKLLIWLYAPVAYENSKHPQLLYSDPREAASFLDRIRNK 300          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: B8BZ34_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ34_THAPS)

HSP 1 Score: 100 bits (248), Expect = 2.690e-19
Identity = 76/248 (30.65%), Postives = 109/248 (43.95%), Query Frame = 3
Query:  375 PRPRAAHSAADGSFQKQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWEGVGQVMHYDTTIPT---VIGIITAAALT---IDVWKRSGCTV-KM--------------------------------VLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATDPEMEE--------------TLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMVRNR*AN 959
            P+   A     G+  + + L+ L  VPDDDRA E+  A  F  +VGS       G +   +   P    V+GI T   +     DV    G  V KM                                V+ G+NRL   + ER+ + EA A   AY  GLPCFAFQP+A+E   +  D   +E               L++  G+ ++L+WL+A VA E   H Q+I+SDPR+A  FL+ +  + AN
Sbjct:  199 PQTTNAFPFGGGNKNQMERLQSLPAVPDDDRATEVSQAVIFATVVGSCLGVNVFGGLFGLEDLTPLANLVLGITTTTLVVDNFFDVIVMGGSAVAKMNEDKIPEGAKGVSAPKKEDMPLGLGTGSITGSVVKGLNRLLSVNTERDCQCEAAAVFAAYSLGLPCFAFQPNALEGAALVVDSMRKEPNNSDGFQIQGNLDNLVSDVGLLKVLIWLMAPVAMEISKHPQLISSDPREALGFLKRLDEKAAN 446          
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Match: B7GB00_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GB00_PHATC)

HSP 1 Score: 98.6 bits (244), Expect = 8.420e-19
Identity = 72/233 (30.90%), Postives = 107/233 (45.92%), Query Frame = 3
Query:  363 AEIFPRPRAAHSAA---DGSFQ-KQKALRGLAPVPDDDRAQEIGYAASFMVLVGSDFSWE--GVGQVMHYDTTIPTVIGIITAAALTIDVWKRS------------------------------GCTVKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEAIRMATDPEME----ETLLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAHAFLQMV 941
            A+I P P AA S     DGS + + + L  +A +P D+R  E+  A     + G  F  +  G+  +  +     + + ++ A     D++K S                              G     V+ G  RL   D ERES  EA A LTAY TGLPCFA++P+A+EA  +  +        ++LL+  G+ R+LVWLLA VA E       I S+PR+A +FL  +
Sbjct:  197 ADILPLPLAATSRVKCPDGSMKTRSERLSTVADIPFDERGTEVKNAFGVTAVAGGCFFTDVAGMDDIAPFANVFLSTLIVVGALDNFYDLFKTSTSMIAKQVAKNGAADFELPEKDALPFGLGSGQLTGSVVRGFARLLTTDAERESLCEASALLTAYCTGLPCFAYRPNALEASVLVVESTKNSNGMDSLLSSAGIMRVLVWLLAPVAAESAKFPVCIVSNPREAESFLDRL 429          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig118.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LH72_ECTSI1.930e-10991.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z355_9STRA2.100e-5048.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XSQ6_9STRA1.550e-3542.25Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D6H3_9STRA1.140e-3242.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U4H7_9STRA8.230e-3242.53Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A7S3XHA8_HETAK1.480e-2739.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2WW41_9STRA1.110e-2238.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2KXP3_9STRA1.250e-2031.70Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BZ34_THAPS2.690e-1930.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7GB00_PHATC8.420e-1930.90Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig118contigP-lacustris_contig118:130212..132624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue4.6e-53
Seed eggNOG ortholog2880.D8LH72
Hectar predicted targeting categoryother localisation
EggNOG OGs2DR9F@1,2S6DN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000800.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1183
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig118.1367.1prot_P-lacustris_contig118.1367.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig118 131200..132624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.2094724-UTR-P-lacustris_contig118:130211..1306131622815493.2094724-UTR-P-lacustris_contig118:130211..130613Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 130212..130613 -
1693493571.9511626-UTR-P-lacustris_contig118:130211..1306131693493571.9511626-UTR-P-lacustris_contig118:130211..130613Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 130212..130613 -
1622815493.2197878-UTR-P-lacustris_contig118:130898..1311991622815493.2197878-UTR-P-lacustris_contig118:130898..131199Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 130899..131199 -
1693493571.9621649-UTR-P-lacustris_contig118:130898..1311991693493571.9621649-UTR-P-lacustris_contig118:130898..131199Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig118 130899..131199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.2352152-CDS-P-lacustris_contig118:131199..1312301622815493.2352152-CDS-P-lacustris_contig118:131199..131230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 131200..131230 -
1693493571.9709883-CDS-P-lacustris_contig118:131199..1312301693493571.9709883-CDS-P-lacustris_contig118:131199..131230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 131200..131230 -
1622815493.248533-CDS-P-lacustris_contig118:131549..1316671622815493.248533-CDS-P-lacustris_contig118:131549..131667Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 131550..131667 -
1693493571.9802136-CDS-P-lacustris_contig118:131549..1316671693493571.9802136-CDS-P-lacustris_contig118:131549..131667Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 131550..131667 -
1622815493.2626972-CDS-P-lacustris_contig118:132115..1323951622815493.2626972-CDS-P-lacustris_contig118:132115..132395Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 132116..132395 -
1693493571.9890985-CDS-P-lacustris_contig118:132115..1323951693493571.9890985-CDS-P-lacustris_contig118:132115..132395Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 132116..132395 -
1622815493.273144-CDS-P-lacustris_contig118:132573..1326241622815493.273144-CDS-P-lacustris_contig118:132573..132624Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 132574..132624 -
1693493571.9982038-CDS-P-lacustris_contig118:132573..1326241693493571.9982038-CDS-P-lacustris_contig118:132573..132624Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig118 132574..132624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig118.1367.1

>prot_P-lacustris_contig118.1367.1 ID=prot_P-lacustris_contig118.1367.1|Name=mRNA_P-lacustris_contig118.1367.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=160bp
MALGRGMDKGDRQRLQQTVAATAGGLVKTASLERVIDGLGESEKYNAVLQ
GVSSIVMGKKRVGAAAKDAFEEVFQLLDEMHANKIKCTIRTASAVVDAAT
ATTNISIITKVFSKIRRAGVGLKFSRDLGRLTLLPTEASKSRKLFGVLHR
CPTTTVPKK*
back to top

mRNA from alignment at P-lacustris_contig118:130212..132624-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig118.1367.1 ID=mRNA_P-lacustris_contig118.1367.1|Name=mRNA_P-lacustris_contig118.1367.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2413bp|location=Sequence derived from alignment at P-lacustris_contig118:130212..132624- (Pleurocladia lacustris SAG_25_93)
ATGGCTCTCGGGAGGGGTATGGACAAAGGAGACAGGCAACGGTTGCAGCA GGTGTGTGTGATGACTAGCATGACCGTTGGGCGTCTTCTTTTCTTGGGAA GTCATACCCTTCATTTCCCCGTTATGGTCTTCACCTTCACGAAGCCTGTA TGATCCCCGCATGTGTGTCCTGTGTTTCACCCGAGCTCGCTGCCACTTCT CTACCACGTGATACCATGCTTTGATGAAGACCGTTGCTGCTACTGCTGGG GGGTTGGTGAAGACGGCTTCATTAGAGCGTGTGATAGACGGTCTTGGAGA AAGCGAAAAGTACAACGCGGTGCTGCAAGGTGTGTCGAGTATCGTCATGG GCAAGAAGAGGGTTGGTGCTGCAGCTAAGGATGCCTTTGAGGAGGTATTT CAACTCCTCGACGAAATGCACGCCAACAAGATAAAGTGCACCATCCGCAC CGCCTCAGCCGTGGTGGACGCTGCGACAGCCACAACGAACATCAGCATTA TTACCAAAGGTATGTGCCCAATAACCAGCGGTAGGTACAGTATAATATAC TTCAAGTAATGTGTCGGGAGGTTTTGCTCGATGAGGAGAGTAGTGATCTT ACTGCTGTACTGTGCGGAGAATCGCACACGTTTTTTGCACGCACTCAATT GCTTTTGCGAGCAAGGCAATATGCTTGATCAGTAAGTTTGCACGCACACA CAACCCTCAAATGTAAACCGTCTTACGTCGCACACGGCGAGTATATGTCT GAAGTAAACTGCCTGTTACTCACATCAGAGAGTGTAGATCTGAAAAACAC GTTCAAACGATTTGAACCGGAACTTCTACATGGAAACCCAAAAGGTGGAC GTGTAGGTAAGCGTACAAATTGCCAAGAACTATCGGTATATGTTCTCCCT CGAATCAGTCTTGTCTCTCTGCCATGTACGCGTGTGTTCCGGCTTGTCTG TGGCCAGTCTTTTCGAAAATTCGACGAGCTGGGGTTGGGCTGAAATTTTC CCGCGACCTCGGGCGGCTCACTCTGCTGCCGACGGAAGCTTCCAAAAGCA GAAAGCTCTTCGGGGTCTTGCACCGGTGAGTCCTGTCCCAGTGTCAGTTG AACCGTTTACAACTTTCAGTACCGAACTGCAGTCAGTGTGTTGACAACAA CAGGGTAACGTTAATGTTGATGCATGCTCCTAATGCTGTACAAATAGTTG GTTGGCGAAACGGTGTAGTCTACCCAGCTCGGTGGTTCAGCACGTGGTTC GCTTGCTGCTTTGAAGAGATCTGTTTGTTAGGGACACAGATCGATGAGAA GATTTTCAATCAAGTTTTCCACGAAACCACTTGGGCGGCCGACCTTCACG TCAAACCAACATACTTGCTGCCATGCGCGGTCGGCCATCTGCAGGTGCCC GACGACGACCGTGCCCAAGAAATAGGGTATGCCGCATCCTTCATGGTCCT GGTCGGCTCTGATTTCTCTTGGGAGGGAGTTGGACAAGTCATGCACTACG ATACCACTATACCAACGGTGATTGGGATCATCACCGCCGCTGCTCTCACC ATTGACGTGTGGAAGAGGTCCGGTTGCACGGTAAAGATGGTTCTCAATGG CATGAACAGGCTATTTTTGAAGGACGTGGAGCGTGAGAGCCGAGCAGAGG CCGGAGCATTCTTGACGGCATACATGACAGGGCTGCCCTGTTTCGCTTTC CAGCCCAGTGCGGTGGAGGCGATCCGGTGTGTACCGAGAAACACAATACA ATTGGCAGTGTACAGATCATGGTGTACAGTTATGCCCCGTTTCTCCCTCT CTCGCCTGCCGTTGTGGTGTGTACAGTGAGTGCTGGGTGAATAGTGCCGG TTGCACTTTGTGCAGCGATTCCCAAGTCACTACTAGTGAGTGCCCGTATT CTTGTGGGGTACATTGCGGCACGCACTTCTGGGGAGCCCAGTGTATCCCT TCGCCTGTGACGCGCTGAAAGGCTGTAATGTTCCTAATCTGGCACCTCGT GTTTATGTTAGGATGGCCACCGATCCCGAAATGGAGGAGACTCTGTTAAA TGGCAATGGCGTCCACCGCATTCTGGTTTGGCTGCTGGCCGGGGTAGCGG GCGAAGGACTAGTTCACCGACAAATGATTGCCAGCGATCCTCGCCAGGCC CACGCTTTTTTGCAGATGGTCCGAAATAGGTGAGCAAACACGTGTACCAG AAGGTTTCGTCGCCGCGAAACGAGAACTACTGTTCTAGTATTAGTAAACT TTCTCTGGGCCATGCAACAGTTATGACGCGGTACTATCAAACGTTCGCCG GTGTGGAGCCTGGCTTTTCAATCCTGCGTATCGCAACATGTTCAACTAAA AGCACAGTAGTGGTTGTAGTCCGTCGCCGATTGTTTGGCGCCAACCCTGC CTCGCGTGCATGT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig118:130212..132624-

>mRNA_P-lacustris_contig118.1367.1 ID=mRNA_P-lacustris_contig118.1367.1|Name=mRNA_P-lacustris_contig118.1367.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=960bp|location=Sequence derived from alignment at P-lacustris_contig118:130212..132624- (Pleurocladia lacustris SAG_25_93)
ATGGCTCTCGGGAGGGGTATGGACAAAGGAGACAGGCAACGGTTGCAGCA
GATGGCTCTCGGGAGGGGTATGGACAAAGGAGACAGGCAACGGTTGCAGC
AGACCGTTGCTGCTACTGCTGGGGGGTTGGTGAAGACGGCTTCATTAGAG
CGTGTGATAGACGGTCTTGGAGAAAGCGAAAAGTACAACGCGGTGCTGCA
AGGTGTGTCGAGTATCGTCATGGGCAAGAAGAGGGTTGGTGCTGCAGCTA
AGGATGCCTTTGAGGAGGTATTTCAACTCCTCGACGAAATGCACGCCAAC
AAGATAAAGTGCACCATCCGCACCGCCTCAGCCGTGGTGGACGCTGCGAC
AGCCACAACGAACATCAGCATTATTACCAAAGACCGTTGCTGCTACTGCT
GGGGGGTTGGTGAAGACGGCTTCATTAGAGCGTGTGATAGACGGTCTTGG
AGAAAGCGAAAAGTACAACGCGGTGCTGCAAGGTGTGTCGAGTATCGTCA
TGGGCAAGAAGAGGGTTGGTGCTGCAGCTAAGGATGCCTTTGAGGAGGTA
TTTCAACTCCTCGACGAAATGCACGCCAACAAGATAAAGTGCACCATCCG
CACCGCCTCAGCCGTGGTGGACGCTGCGACAGCCACAACGAACATCAGCA
TTATTACCAAAGTCTTTTCGAAAATTCGACGAGCTGGGGTTGGGCTGAAA
TTTTCCCGCGACCTCGGGCGGCTCACTCTGCTGCCGACGGAAGCTTCCAA
AAGCAGAAAGCTCTTCGGGGTCTTGCACCGTCTTTTCGAAAATTCGACGA
GCTGGGGTTGGGCTGAAATTTTCCCGCGACCTCGGGCGGCTCACTCTGCT
GCCGACGGAAGCTTCCAAAAGCAGAAAGCTCTTCGGGGTCTTGCACCGGT
GCCCGACGACGACCGTGCCCAAGAAATAGGTGCCCGACGACGACCGTGCC
CAAGAAATAG
back to top