mRNA_P-lacustris_contig1178.1345.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54) HSP 1 Score: 272 bits (695), Expect = 1.120e-77 Identity = 164/401 (40.90%), Postives = 235/401 (58.60%), Query Frame = 3
Query: 687 TANMRDLVSKMNPDFDPSVIIEAARREVGDFHETKEEDDKLISEKVILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEH--QRERSDLIKQGWSSDFT--PPKHASILPICSSKAVFIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVSDVEYREKIRAKDAEEYEVRRRRDRKI------TGKQSRTWETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKYV 1859
T +R + ++P D ++II+ A +E +F + D K S + I HL +F YV +SR+ YE V + + PGK+ +++R + +K +FT PPK ++LPICS+ AVFI I+ + L WG+ +SNDAWW+++VL+PFS+EAN+KCL NKEN +S ++ +L CPW++G SFLTDGVQ+K+ L TL FSGSS L+EKGY+KLPRADV L +L+ RGVYNI ++ T I ++ ++MSADPGQAK+INVS A AR W + DPG IL +S V +YR A ++EYE RR+ + G + + L +R+ + R L RKF F RFRA Q TL+++ADKY+
Sbjct: 252 TQKLRTMSRAIDPGTDTNIIIDFAWQEK-EFSDRDRGDGK--SAETIKHLNWMFNTYVAESRRMYEEAVSRSHL-FAPGKDKACRKKRDEFMKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNISSLLKST--SIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRWCVNGPVLFRETLQTGRKF-------MRFDRFRATQKTLALIADKYM 639
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53) HSP 1 Score: 264 bits (675), Expect = 1.590e-76 Identity = 161/400 (40.25%), Postives = 231/400 (57.75%), Query Frame = 3
Query: 687 TANMRDLVSKMNPDFDPSVIIEAARREVGDFHETKEEDDKLISEKVILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEH--QRERSDLIKQGWSSDFT--PPKHASILPICSSKAVFIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVSDVEYREKIRAKDAEEYEVRRRRDRKI------TGKQSRTWETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKY 1856
T +R + ++P D ++II+ A +E F + D K S + I HL +F YV +SR+ YE V + + PGK+ +++R + +K +FT PPK ++LPICS+ AVFI I+ + L WG+ +SNDAWW+++VL+PFS+EAN+KCL NKEN +S ++ +L CPW++G SFLTDGVQ+K+ L TL FSGSS L+E+GY+KLPRADV L +L+ RGVYNI ++ T I ++ ++MSADPGQAK+INVS A AR W + DPG IL +S V +YR A ++EYE RR+ + G + + L +R+ + R L RKF F RFRA Q TL+++A Y
Sbjct: 129 TQKLRTMSRAIDPGTDTNIIIDFAWQEKK-FSDRDRGDGK--SAETIKHLNWMFNTYVAESRRMYEEAVSRSHL-FAPGKDKACRKKRDEFVKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNISSLLKST--SIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRWCVNGPVLFRETLQTGRKF-------MRFDRFRATQKTLALIAGPY 515
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 265 bits (677), Expect = 3.720e-75 Identity = 162/385 (42.08%), Postives = 227/385 (58.96%), Query Frame = 3
Query: 732 DPSVIIEAARREVGDFHETKEEDDKLISEKVILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEH--QRERSDLIKQGWSSDFT--PPKHASILPICSSKAVFIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVSDVEYREKIRAKDAEEYEVRRRRDR-------KITGKQSRTWETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADK 1853
D +II+ ARRE DF + D K+ K I HLY +F YV +SR+ YE V A + PG++ +++R + +K FT PPK ++LPICS+ AVFI I+ + L+ WG+ +SNDAWW+++VL+PFS+EANIKCL NKEN +S ++ +L CPW++G SFLTDGVQ+K+ LVTL FSGSS L+E GY+KLPRA+ L +L+ RGVYNI ++ T I ++ ++MSADPGQAK+INVS A A W + DPG IL +S V +YR A ++EYE RR+D+ +++ ++ RT L K + + L RKF F RFRA Q TL+ +AD+
Sbjct: 370 DTDIIIDFARREK-DFSDRDCGDGKIA--KTIKHLYWMFNTYVAESRRMYEEAVSRAHL-FAPGEDKACRKKRDEFVKHELGEKFTYAPPKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLEST--SIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRT-SCLATFIQYCKSWCANGPALFLETLQTGRKF-------MRFDRFRATQKTLAKIADR 740
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC) HSP 1 Score: 258 bits (658), Expect = 2.550e-72 Identity = 157/398 (39.45%), Postives = 230/398 (57.79%), Query Frame = 3
Query: 696 MRDLVSKMNPDFDPSVIIEAARREVGDFHETKEEDDKLISEKVILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEHQ--RERSDLIKQ--GWSSDFTPPKHASILPICSSKAVFIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVSDVEYREKIRAKDAEEYEVRRRRDRKITGKQSRTWETL*RKRLVSK-----RFWSTVSLG-QRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKYV 1859
+R++ ++ DP IIE A +E +F + + K I HL +F+ YV +SR+ YE V+ A LFPG+E + ++R++ +K+ G PP+ S+LPICS+ +VFI ++ + L+ WG+ +SNDAWW++ VL+PFS EANIKCLR++EN +S + ++ +L + CPW VG SFLTDGVQ+K+ LVTL + FSGSS L+E+GYSKLPRAD L TL+ + RGVYNI ++ I + ++MSADPGQAK+INV A + W++ DP IL +S V +YR + A ++EYE RRR R + R ++ R W S L R+F F R RA QS L+ +AD+++
Sbjct: 264 LREMAKALDSGMDPEPIIEFALKEK-EFSDNFSANQKCAP--TIAHLDWMFKTYVSESRRKYEEVLS-RAHSLFPGEEKEISKKRNEFMKRELGRGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNISSLVESE--SIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDYRRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRTSCLTTFIQYCRSWCANSSALMNETLQKGRRFLR-------FGRHRATQSILARIADRFM 648
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 244 bits (624), Expect = 2.680e-67 Identity = 149/371 (40.16%), Postives = 214/371 (57.68%), Query Frame = 3
Query: 807 LISEKVILHLYNLFEKYVG--DSRKTYERVVQDAAMKLFPGKE-------HQRERSDLIKQGWSSDFT--PPKHASILPICSSKAVFIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVSDVEYREKIRAKDAEEYEVRRRRDR-------KITGKQSRT--WETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKYV 1859
L+ +K LY+L +K + D Y ++ A + PG + + +R + +K +FT PPK ++LPICS+ +VFI I+ + L+ WG+ +SNDAWW+++VL+PFS+EANIKCL NKEN +S ++ +L CPW++G SFLTDGVQ+K+ LVTL F GS+ L+E GY+KLPRADV L +L+ RGVYNI ++ I ++ ++MSADPGQAK+INVS A AR W DPG ILNSS V +YR A +++YE RR+D+ ++ ++ RT T R K + + + L +RKF F RFRA Q TL+ +ADKY+
Sbjct: 320 LVYKKYATKLYDLAKKIITEFDGTPEYAEDLRQKAQSIDPGTDIDTILDFARNKRYEFVKNELGEEFTYAPPKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNISSLLDSP--SIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIR---YCKSWCANGAALLLETLQEARKFLR-------FDRFRATQKTLAKIADKYM 678
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 160 bits (406), Expect = 6.010e-38 Identity = 81/156 (51.92%), Postives = 108/156 (69.23%), Query Frame = 3
Query: 1032 FIRIESRGLREWGIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKVCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKI 1499
F+R LR G+ +SNDAWW+++VL+PFS+EANIKCL NKEN +S ++ +L+ CPW++G SFLTDGVQ+K+ LVTL FSGSS L+E GY+KLPRAD L +L+ RGVYNI ++ T I ++ I+MSADPGQAK+
Sbjct: 569 FMRAHELALR--GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLEST--SIREDVIVMSADPGQAKV 720
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A835YVY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY1_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.010e-26 Identity = 106/379 (27.97%), Postives = 163/379 (43.01%), Query Frame = 3
Query: 825 ILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEHQRERSDLIKQGWSSDFTPPKHASILPICSSKAVFIRIESRGLREW---GIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKV--------------------CPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSD---FVSDVEYREKIRAKDAEEYEVRRRRDR--------KITGKQSRTWETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKYV 1859
I Y L Y+ R+ YE V ++ KE R+ + + W D P + S LP C + A F RI+ + +R+ +K+ WW+++ FS+ ANI CLR + F+ + ++ CP V SFLTDGVQ+K+HLVT A + G L + GY L + +I RGVYN+ +T + ++ D II + DPGQ +I++ A W+ + +++++ F D YRE AK +EE E +RRRD +TG++ RT + R W+ S L + R F R+ AVQ ++ VAD V
Sbjct: 291 IAFCYRLQRDYLSADRRLYESVRAESWRLFSQDKER---RNAFMSERWLHDGKPAREMSPLPTCKTGAAFFRIDQKAIRKLFGRALKDCGGPWWYQDFFDVFSKRANIPCLRGSGGQYARSEHGAFIALKKTQQQAAIRASLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSTPRTMREIIDIGRGVYNVEAITSESLSDL-DGVIISAFDPGQVEIVSGVEALGEEWRRPNAAALMSTATRRGFAGD-RYREDTLAKLSEEKEEKRRRDNGAYGGALDALTGQRRRTSALA--EYAAYCRVWAQESPHLFEELLQDTR------RHHTFRRYSAVQRAVAAVADDMV 656
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A835ZCL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL1_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.940e-21 Identity = 98/379 (25.86%), Postives = 158/379 (41.69%), Query Frame = 3
Query: 825 ILHLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEHQRERSDLIKQGWSSDFTPPKHASILPICSSKAVFIRIESRGLREW---GIKNSNDAWWFEEVLQPFSEEANIKCLRNKENVARGTSLEKFVKALENKENKV--------------------CPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYSKLPRADVGLGTLISRRRGVYNIGTVTPCTPGEIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSD---FVSDVEYREKIRAKDAEEYEVRRRRDRK--------ITGKQSRTWETL*RKRLVSKRFWSTVSLGQRTVLACSRKF*GCREREGGFSRFRAVQSTLSMVADKYV 1859
I Y L Y+ + YE V ++ + KE RS + + W D P + S LP C + A F+RI+ + +R+ +K+ WW+++ FS+ ANI CLR + F+ + ++ CP V SFLTDGVQ+K+HLVT A + G L + GY L + +I GVYN+ +T + ++ D I+ + DPGQ W+ + +++++ F D Y++ AK +E+ E +RRRD +TG++ RT + R W+ S L + R F R+ +VQ ++ VAD V
Sbjct: 67 ITFCYGLQRDYLSADHRLYESVRAESWRLVSQDKER---RSAFMSERWQHDGKPAREMSPLPTCKTGAAFVRIDQKAIRKLFGCALKDCGGPWWYQDFFDVFSKRANIPCLRGSGGQYARSEHGAFIALKKTQQQAAIRATLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSMPRTMREIIDIGHGVYNVEAITSESLSDL-DGVIVSAFDPGQE------------WRRPNAAALMSTATRRGFAGD-RYQDGTLAKLSEQKEEKRRRDNAAYGGALDALTGQRRRTSALA--EYTAYCRAWAHESPHLFEELLQDTR------RHHAFRRYSSVQRAVAAVADAMV 420
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A835YJ56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ56_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.910e-12 Identity = 76/279 (27.24%), Postives = 115/279 (41.22%), Query Frame = 3
Query: 834 LYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEHQRERSDLIKQGWSSDFTPPKHASILPICSSKAVFIRIESRGLREW--GIKN---SNDAWWFEEVLQPFSEEANIKCLRNKEN-VARGTSLEKFVKALENKENK----VCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKGYS----KLPRADVGLGTLISRRRGVYN-------IGTVTPCTPGEIP---------DETIIMSADPGQAKIINVSRAEARVWKENDPGKILNSSDFVS 1580
L L + YV R Y+ ++ + +RE D + W PPK + LP + FIRI+ G+ E G+ WW+ E +QP+++ ANI +R + N AR S ++A+E + PWLV +F+TDG QLK+ LVT SH G + L +GY DV G + GV+ IG G P D ++ DPGQ + A + W+ + N++DF +
Sbjct: 587 LAQLQQLYVETDRTDYQELMSGLFEQFPDDAAARRENRDAV---WGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYAR--SERGVMRAIERASQPGYRVLAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQVGYINEELGDVLEGEVAEGPNGVFRLQRVHREIGAEPATVAGGTPAAQDRLHALDHVVVTGVDPGQVLAFSAVTALGQRWRRD------NAADFAA 854
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Match: A0A835YWJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.830e-12 Identity = 84/312 (26.92%), Postives = 125/312 (40.06%), Query Frame = 3
Query: 831 HLYNLFEKYVGDSRKTYERVVQDAAMKLFPGKEHQRERSDLIKQGWSSDFTPPKHASILPICSSKAVFIRIESRGLRE-------WGIKNSNDAWWFEEVLQPFSEEANIKCLRNKEN-VARGTSLEKFVKALENKENK----VCPWLVGTSFLTDGVQLKIHLVTLASSHPEFSGSSALDEKG----YSKLPRADVGLGTLISRRRGVYNI-----------GTVTPCTPG-----EIPDETIIMSADPGQAKIINVSRAEARVWKENDPGKILNS---------SDFVSDVEYREKIRAKDAEEYEVRRR 1643
HL L + YV R Y+ ++ + +RE D + W PK + LP + FIRI+ GL E W WW+ E +QP+++ ANI +R + N AR S ++A+E + PWLV +F+TDG QLK+ LVT SH G + L +G Y DV G + GV+ + TV TP D ++ DPGQ + A + W+ + + + +S +YRE + EE EV+RR
Sbjct: 309 HLAQLQQLYVETDRADYQDLMSGLFEQFPDDAAARRENRDAV---WGLLPVLPKLTAPLPRFKPQPAFIRIDRTGLGELFPGLAAW--MAGRGPWWYAEFMQPWAKAANITTMRQRTNHYAR--SERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGHQVGYINEELGDVLEGEVAEGPNGVFRLQRVHREIGAEPATVADGTPAAQERLHALDHVVVTGVDPGQVLAFSAVTALGQRWRRDSAADFAANPPPEGEGVTAQEMSGADYREWALSVRNEEGEVQRR 613 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1178.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1178.1345.1 >prot_P-lacustris_contig1178.1345.1 ID=prot_P-lacustris_contig1178.1345.1|Name=mRNA_P-lacustris_contig1178.1345.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=397bp MKWQQQPLHGFPFTRRTGESHFSSGSFRIRFLGLLASRRRLTRVIVIHSQback to top mRNA from alignment at P-lacustris_contig1178:47649..49590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1178.1345.1 ID=mRNA_P-lacustris_contig1178.1345.1|Name=mRNA_P-lacustris_contig1178.1345.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1942bp|location=Sequence derived from alignment at P-lacustris_contig1178:47649..49590+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1178:47649..49590+ >mRNA_P-lacustris_contig1178.1345.1 ID=mRNA_P-lacustris_contig1178.1345.1|Name=mRNA_P-lacustris_contig1178.1345.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2382bp|location=Sequence derived from alignment at P-lacustris_contig1178:47649..49590+ (Pleurocladia lacustris SAG_25_93)back to top |