mRNA_P-lacustris_contig1177.1339.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1177.1339.1
Unique NamemRNA_P-lacustris_contig1177.1339.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1177.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1177contigP-lacustris_contig1177:59267..59582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.8570523-CDS-P-lacustris_contig1177:59266..595811622815488.8570523-CDS-P-lacustris_contig1177:59266..59581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1177 59267..59581 +
1693493569.109105-CDS-P-lacustris_contig1177:59266..595811693493569.109105-CDS-P-lacustris_contig1177:59266..59581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1177 59267..59581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1177.1339.1prot_P-lacustris_contig1177.1339.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1177 59267..59581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1177.1339.1

>prot_P-lacustris_contig1177.1339.1 ID=prot_P-lacustris_contig1177.1339.1|Name=mRNA_P-lacustris_contig1177.1339.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
GAGGGDEEGRDGTIRAVTPRGGGRPSTNGKAETRAGGRKRSRWDGTRARG
RRSGHPTAPNGGRTRRGDRRANLGVRCARRRLPARCHVGPDFGVRSGRGR
RDNHH
back to top

mRNA from alignment at P-lacustris_contig1177:59267..59582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1177.1339.1 ID=mRNA_P-lacustris_contig1177.1339.1|Name=mRNA_P-lacustris_contig1177.1339.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=316bp|location=Sequence derived from alignment at P-lacustris_contig1177:59267..59582+ (Pleurocladia lacustris SAG_25_93)
GGAGCCGGGGGAGGGGACGAGGAGGGGCGCGACGGAACAATTCGCGCGGT
GACACCGCGAGGCGGGGGGCGGCCAAGCACGAACGGGAAGGCCGAAACAC
GCGCCGGCGGGAGGAAAAGAAGCCGGTGGGACGGAACACGCGCCCGCGGA
AGGAGGAGCGGGCACCCGACAGCACCAAACGGAGGGAGGACTCGCCGCGG
CGATCGGCGAGCAAACCTCGGAGTCCGATGCGCAAGGAGGCGCCTCCCAG
CCCGCTGTCACGTCGGGCCAGACTTCGGCGTAAGGAGCGGCCGAGGGAGG
AGGGACAACCACCATC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1177:59267..59582+

>mRNA_P-lacustris_contig1177.1339.1 ID=mRNA_P-lacustris_contig1177.1339.1|Name=mRNA_P-lacustris_contig1177.1339.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig1177:59267..59582+ (Pleurocladia lacustris SAG_25_93)
GGAGCCGGGGGAGGGGACGAGGAGGGGCGCGACGGAACAATTCGCGCGGT
GACACCGCGAGGCGGGGGGCGGCCAAGCACGAACGGGAAGGCCGAAACAC
GCGCCGGCGGGAGGAAAAGAAGCCGGTGGGACGGAACACGCGCCCGCGGA
AGGAGGAGCGGGCACCCGACAGCACCAAACGGAGGGAGGACTCGCCGCGG
CGATCGGCGAGCAAACCTCGGAGTCCGATGCGCAAGGAGGCGCCTCCCAG
CCCGCTGTCACGTCGGGCCAGACTTCGGCGTAAGGAGCGGCCGAGGGAGG
AGGGACAACCACCATGGAGCCGGGGGAGGGGACGAGGAGGGGCGCGACGG
AACAATTCGCGCGGTGACACCGCGAGGCGGGGGGCGGCCAAGCACGAACG
GGAAGGCCGAAACACGCGCCGGCGGGAGGAAAAGAAGCCGGTGGGACGGA
ACACGCGCCCGCGGAAGGAGGAGCGGGCACCCGACAGCACCAAACGGAGG
GAGGACTCGCCGCGGCGATCGGCGAGCAAACCTCGGAGTCCGATGCGCAA
GGAGGCGCCTCCCAGCCCGCTGTCACGTCGGGCCAGACTTCGGCGTAAGG
AGCGGCCGAGGGAGGAGGGACAACCACCAT
back to top