mRNA_P-lacustris_contig1176.1335.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1176.1335.1
Unique NamemRNA_P-lacustris_contig1176.1335.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5KT98_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT98_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 6.680e-32
Identity = 99/249 (39.76%), Postives = 130/249 (52.21%), Query Frame = 3 
Query: 3936 LFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGNIKQLLPKTTYTCSRRGRGQMAAL*ACSSTTFSASCAAPH-RSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSKH 4679
            ++N DETGL +R+LP+ TYLAP E +KT RGVKGM AKDR+T Y+   ASG  K+P + IGTA++PRCF   K       Y   +  R          S  F      PH RS++         +   +I        S H    A        +  A K  Y+ +L  IRVDTM +A QLR+QAKE+K+  G MGL +G QPH+LDA ELG      V  E   RCW K   LP+ + A L ++  K+
Sbjct:   99 VYNADETGLCYRILPKATYLAPSELKKTVRGVKGMRAKDRVTAYMATSASG-CKVPPSSIGTAKEPRCF---KIRGSPIKYFSQKNARSDARVFKLWWSQVF-----LPHVRSVT---------SEKVKILELPPNCTSKHQPMDAG-------IIAAWKVRYRTKLPGIRVDTMTSAAQLREQAKERKVIRGCMGLAEGAQPHILDAAELGLEAWKEVLPETIKRCWRKCDMLPSAVHADLDEDVGKN 322
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.270e-31
Identity = 99/262 (37.79%), Postives = 133/262 (50.76%), Query Frame = 3 
Query: 3936 LFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGNIKQLLPKTTYTCSRRGRGQMAAL*ACSSTTFSA---------------SCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            +FNVDETG+++R+LP+RTYL+  E RKT RG KGM AKDR++ Y+C  A+GTAK+P+A IG A+ PRCF +    L   TY          A         F                  CA+ H  L           P  +I+ +      T+             + +  K+ Y+  LL IRV TM +   LR+QAK++KM AGTMGL +G   H+LDA EL       V+     RCW+KA TLPA  QAQL  ++ K
Sbjct:  275 IFNVDETGMYYRLLPKRTYLSTTEKRKTARGTKGMKAKDRVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPL---TYFSQANAWSDNATFKKWWLEVFIPFIRKWTHEPVLLLMDGCAS-HGDL---------VDPRGQIEVSTYPPNCTYKYQPMDMG-----VIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTITRCWVKAETLPAEHQAQLANDAGK 518
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5JCF6_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.040e-28
Identity = 99/288 (34.38%), Postives = 135/288 (46.88%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGN------------------------IKQLLP---KTTYT--------CSRRG-----RGQMAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            ++FNVDETGL ++++PRRTYL+  EDRKT RG K    KDRL+  +C  A GTAK+ +A IG A++PRCF N                        ++  LP   + T+         CS        RGQ+  +      T+   C A H+             P  +   AK+                        K  Y+ +LL ++  TM  A  LR QAK +KMKAGTMGL QG QPHV DA E  +     V+ +  ARC++KA TLP  M A+L ++  K
Sbjct:   29 FIFNVDETGLQWKLMPRRTYLSTSEDRKTARGSKSTHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLKYFSQTNAWSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRGQVTVM------TYPPLCTAVHQ-------------PMDQGVIAKT------------------------KVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAERLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHGK 273
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5JMF1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.180e-28
Identity = 100/282 (35.46%), Postives = 135/282 (47.87%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGN----IKQLLPKTTYTCS---------------RR--GRGQMAAL*ACSS-------------TTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            ++FNVDETGL ++++PRRTYL+  EDRKT RG K M  KDRL+  +C  A GTAK+ +A IG A++PRCF N    +K       ++ S               RR   +  +  +  CSS              T+   C A H+ +                           L   A T           K  Y+ +LL ++  TM  A  LR QAK +KMKAGTMGL QG QPHV DA EL +     V+ +  ARC++KA TLP  M A+L ++  K
Sbjct:  141 FIFNVDETGLQWKLMPRRTYLSTSEDRKTARGSKSMHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFENGGSPLKYFSQANAWSDSATFLTWWLVVFLPFVRRFTHKPVLLLMDGCSSHSDLVDDRGQVTVKTYPPLCTAVHQPMD--------------------------LGVIAKT-----------KVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHGK 385
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5KUT5_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT5_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.830e-28
Identity = 98/267 (36.70%), Postives = 134/267 (50.19%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGNIKQLLPKTTYTCS-------------------RRGRGQMAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            ++FNVDETGL +++LPRRTYL+  EDRKT RG K M  KDRL+ ++C  A GTAK+ +A IG A++PRCF +    L   + T +                   RR   +   L           CA+ H  L            T +    K    S H         +TK +F+        +LL ++  TM  A  LR QAK +KMKAGTMGL QG QPH+ DA EL +     ++ +  ARC++KA TLP+ M A+L  +  K
Sbjct:  106 FIFNVDETGLQWKLLPRRTYLSTSEDRKTARGSKSMYFKDRLSAFMCCNADGTAKVDMAIIGRAKEPRCFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLL-------LMDGCAS-HGDL-----VDDRGQVTVKFYPPKCT--SVHQPMDLGIIAKTKVVFRK-------ELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIARCFVKADTLPSEMAAELTTQHGK 350
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5KD82_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD82_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.860e-27
Identity = 100/288 (34.72%), Postives = 134/288 (46.53%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGN------------------------IKQLLP---KTTYT--------CSRRG-----RGQMAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            ++FNVDETGL ++++PRRTYL+  EDRKT RG K M  KDRL+  +C  A GTAK+ +A IG A++PRCF N                        ++  LP   + T+         CS        RGQ+         T+   C A H+ +                           L   A T           K  Y  +LL ++  TM  A  LR QAK +KMKAGT+GL QG QPHV DA EL +     V+ +  ARC++KA TLP  M A+L ++  K
Sbjct:  258 FIFNVDETGLQWKLMPRRTYLSTSEDRKTARGSKSMHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLKYFSQTNAWSDSATFLRWWLEVFLPFLRRFTHEPVLLLMDGCSSHSHLVDDRGQVTV------KTYPPLCTAVHQPMD--------------------------LGVIAKT-----------KVNYGKELLDVKTSTMLMADTLRAQAKARKMKAGTLGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHDK 502
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5JP23_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP23_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.980e-27
Identity = 98/267 (36.70%), Postives = 134/267 (50.19%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGNIKQLLPKTTYTCS-------------------RRGRGQMAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSK 4676
            ++FNVDETGL +++LPRRTYL+  EDRKT RG K M  KDRL+ ++C  A GTAK+ +A IG A++PRCF +    L   + T +                   RR   +   L           CA+ H  L            T +    K    S H         +TK +F+        +LL ++  TM  A  LR QAK +KMKAGTMGL QG QPH+ DA EL +     ++ +  ARC++KA TLP+ M A+L  +  K
Sbjct:   87 FIFNVDETGLQWKLLPRRTYLSTSEDRKTARGSKSMYFKDRLSAFMCCNADGTAKVDMAIIGRAKEPRCFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLL-------LMDGCAS-HGDL-----VDDRGQVTVKFYPPKCT--SVHQPMDLGIIAKTKVVFRK-------ELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIARCFVKADTLPSEMAAELTTQHGK 331
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5JUU2_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.900e-27
Identity = 87/216 (40.28%), Postives = 117/216 (54.17%), Query Frame = 3 
Query: 3936 LFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCF----GNIKQLLPKTTYTCSRRGRGQMAAL*ACSSTTFSASCAAPH-RSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELG 4568
            ++N DETGL +R++P+ TYLAP E RKT RGVKGM AKDR+T Y+   ASG  K+PL+FIGTA++PRCF      IK    K  ++ +R  +          S  F      PH RS++           + ++        S               +  A +  Y+ +LL IRVDTM +A QLR+QAKE K+  G MG  +G QPH+LDA ELG
Sbjct:  117 VYNADETGLCYRIMPKATYLAPSELRKTVRGVKGMRAKDRVTAYMATSASGR-KVPLSFIGTAKEPRCFKIRGSPIKYFSQKNAWSDARVFKLWW-------SQVF-----LPHVRSVT-----------SEKVLLIMDNHSSHADLVDPKEQPMDAGILAAWRVRYRTKLLGIRVDTMTSAAQLREQAKEGKVIRGCMGFAEGAQPHILDAAELG 308
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5K1S6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.350e-27
Identity = 98/285 (34.39%), Postives = 133/285 (46.67%), Query Frame = 3 
Query: 3933 YLFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGN------------------------IKQLLP---KTTYT--------CSRRG-----RGQMAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQE 4667
            ++FNVDETGL ++++P+RTYL+  E+RKT RG K M  KDRL   +C  A GTAK+ +A IG A++PRCF N                        ++  LP   + T+         CS        RGQ+         T+   C A H+ +                           L   A T           K  Y+ +LL ++  TM  A  LR QAK +KMKAGTMGL QG QPHV DA EL +     V+ +  ARC++KA TLP  M A+L ++
Sbjct:  191 FIFNVDETGLQWKLMPKRTYLSTSENRKTARGSKSMHLKDRLAAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLQVLLADNAGSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRGQVTV------KTYPPLCTAVHQPMD--------------------------LGVIAKT-----------KVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQ 432
[Close]
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Match: A0A6H5J9E2_9PHAE (DDE-1 domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.000e-26
Identity = 92/270 (34.07%), Postives = 130/270 (48.15%), Query Frame = 3 
Query: 3936 LFNVDETGLFFRMLPRRTYLAPGEDRKTERGVKGMTAKDRLTVYVCMRASGTAKMPLAFIGTAEKPRCFGN-------------------IKQLLPKTTYTCSRRGRGQ--MAAL*ACSSTTFSASCAAPHRSLSCF**TTTAATPTWRIQAAKSR*WSTHLTARASTS*RTKRLFQACKKLYKIQLLSIRVDTMGAAGQLRKQAKEQKMKAGTMGLVQGCQPHVLDAIELGRTT*YGVSKEVFARCWMKAGTLPAPMQAQLIQESSKHK 4682
            +FNVDETG+ ++++ RRTYLA  EDRKT RG K M  KDR++  +C  A+GTAK+ LA IGTA+ PRCF                      K+   +      RR   +  +  +  CSS          H  L           P  +++        T +            +  A K +Y+ +LL  +V TM  A  LR +AK +KM  GT GL +G  PHVLDA +L +T    ++    ARC++KA TLP  M+A+L     KH+
Sbjct:   91 IFNVDETGIQWKLIARRTYLAAFEDRKTTRGSKNMEFKDRISAIMCANATGTAKVSLAIIGTAKNPRCFRRRKCPLKYFAQSNAWSDGPTFKKWWQEVFLPFIRRWTHEPVLLLMDGCSS----------HGDL---------IDPVGQVEVVMYPPNCTSVHQPMDMG-----IIAATKVIYRRELLDAKVSTMLVAHALRAEAKSRKMARGTAGLAEGNHPHVLDAADLLKTARGRITPTTIARCFVKAKTLPEDMEAELTAAHGKHR 336
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1176.1335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT98_9PHAE6.680e-3239.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNH6_9PHAE1.270e-3137.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCF6_9PHAE1.040e-2834.38DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JMF1_9PHAE1.180e-2835.46DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUT5_9PHAE1.830e-2836.70DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KD82_9PHAE1.860e-2734.72HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JP23_9PHAE1.980e-2736.70DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JUU2_9PHAE2.900e-2740.28HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K1S6_9PHAE3.350e-2734.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J9E2_9PHAE1.000e-2634.07DDE-1 domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1176contigP-lacustris_contig1176:37261..43725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size5653
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1176.1335.1prot_P-lacustris_contig1176.1335.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1176 39062..40260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.5121434-UTR-P-lacustris_contig1176:37260..383041622815488.5121434-UTR-P-lacustris_contig1176:37260..38304Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 37261..38304 -
1693493568.9132009-UTR-P-lacustris_contig1176:37260..383041693493568.9132009-UTR-P-lacustris_contig1176:37260..38304Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 37261..38304 -
1622815488.5441256-UTR-P-lacustris_contig1176:38493..390611622815488.5441256-UTR-P-lacustris_contig1176:38493..39061Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 38494..39061 -
1693493568.9247525-UTR-P-lacustris_contig1176:38493..390611693493568.9247525-UTR-P-lacustris_contig1176:38493..39061Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 38494..39061 -
1622815488.5862036-UTR-P-lacustris_contig1176:40260..437251622815488.5862036-UTR-P-lacustris_contig1176:40260..43725Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 40261..43725 -
1693493568.9550712-UTR-P-lacustris_contig1176:40260..437251693493568.9550712-UTR-P-lacustris_contig1176:40260..43725Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1176 40261..43725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.56017-CDS-P-lacustris_contig1176:39061..394521622815488.56017-CDS-P-lacustris_contig1176:39061..39452Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1176 39062..39452 -
1693493568.9335353-CDS-P-lacustris_contig1176:39061..394521693493568.9335353-CDS-P-lacustris_contig1176:39061..39452Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1176 39062..39452 -
1622815488.5731678-CDS-P-lacustris_contig1176:40075..402601622815488.5731678-CDS-P-lacustris_contig1176:40075..40260Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1176 40076..40260 -
1693493568.9413102-CDS-P-lacustris_contig1176:40075..402601693493568.9413102-CDS-P-lacustris_contig1176:40075..40260Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1176 40076..40260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1176.1335.1

>prot_P-lacustris_contig1176.1335.1 ID=prot_P-lacustris_contig1176.1335.1|Name=mRNA_P-lacustris_contig1176.1335.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=192bp
MDVLDHLDKKVKQVAVAETFDISLRTVMQIETDAPKIIKQMEERSKGEGA
KGQRVHDAQRYAVLEEVRTAKLSITRDTPRTFGHKARDQLVKNAKADEER
DLYSGFTASEHCVKNFFTRNGLKSLFQHGEAGSVDDQAIEAGMVVIRRTC
EEYDVGISSTWTKPAFSSGCCPGEHTSRQGRTARLKEASKA*
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mRNA from alignment at P-lacustris_contig1176:37261..43725-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1176.1335.1 ID=mRNA_P-lacustris_contig1176.1335.1|Name=mRNA_P-lacustris_contig1176.1335.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6465bp|location=Sequence derived from alignment at P-lacustris_contig1176:37261..43725- (Pleurocladia lacustris SAG_25_93)
TTTTTGGCTTAGCCCGGTTTGGATATGATAGGTGTGGGGTTTGCCACAGC
TGACCCCTTGCAGATTTTACAGTAAGGCTACGCGGGCGGTGCGCCATCGG
CGCCCCACCCGCTTCGCGTGTTTGTAATAGCGAGGGGAAATGAATGAGTA
TTTGGTAACATGGATGGATAGTATCGTCGATGCCAAGTGTGGGATAGGGG
TGAAGGAGAAGGAAGGAGATGTAGGCAAGGCAGAGGATATTATGGGTGCA
TGATATACCTTAGTGATGTAGAAAAATTAAAAAGCGGCGACGACCGTTGA
TGATGGGAAACAAATAATTGAAAAAACGGCATTCATTACAGCACAGTTGG
GGGTGATTCCTGACGTGGCGAATTCCCTCTGTTACAACAGGCAGAGGGCG
GGAGTGAGTGTTGATGACTTCAAGCACAAAAAGCAGGAAATAAAAAGGAG
GAGACAGGTCATGACCCGAAGGACACTTAGGTGTGAACTCCTCCCGGTAC
TTCCTCTCGCGACCGTCGAACGATTTTGAGTAGAAAAGCGGCGACGACCG
TCGATGATCGAAATAATAACTGAAAAAGTGAAGGCATCATTATAGCACAG
AGGTTGGGGGTGAATTCCGTACGTGAAGACGGGCATGAAAAACGGTACTT
ACTCCCGTTATATACAAAGAATGCAAAGTGTCCAGGAAAATAAGAAGGGA
GGCGATAGCTCATGATCCCAAGCAGACTCGGCTACTTGCTCCCGCTATGT
ACAAAGAATGCAAAATATGCAGGAGAATACGCAGGGAGGCGACAGTTCAT
GACCTGGGAGGTACTCCGTCCGGCAAGATACAAAAGAAGTAAGAAGGAAG
GATATGTCTACCGCTACTTCCTCCCGACGTATACAACGAAATATGCGGGA
AAATAAGCACACTCGGGTCCCGTTAGTTCCTGCCGCTATATATGCAAAGA
ATGCGAAATATGCAGGGAAAAGGCGACAGGTCATAACCTGGCGGTGCTTC
CTGCCGTTACAAAAAAAAATGCAGCAAAATAAGAAAGGGAGGCGGCAGGT
CATGACCCGAAGCACACTCGGCTTCCGCAACTTCCTTCCGCTATATATAC
AAGGAATGCAAAATATGGGAGGCGAAACGCCACGAACCCGATCAGACGCG
GCTGTGACCTCCTCCCGCTACTTCTTCCCGCTACATACAAAGAATGCACA
GAATGCAGGACAATGATAAGGGAGCCGACAATTCATGATGCAGGACATAG
GATAAGAGGCCAAGGTCATGACTCGAAACACAGGTGGCTGTTGCGCGCTT
GAGTGTGACCTCCTTCCGTTATTTCCTTCCGCTAGATGCAAATAATTCCG
CTGTTTCCTCCCGCTATATATAAATAATGCTTTACCCCCGTTATATATTG
CCGATGCAGACAACAGGAAGTGCTGACCTCAAGCACGCTTGGCCGTGACT
GCTTCCTGTTATGCAGGCGTCTGAGCGTATACACACAGGCGCATAGCATA
GACAGGCCTGTGAGAAGGGTGCATGACAGATGTGGGTAGGGGAAGAAAAA
GAGGAAAAAAAAGTTGCGAGGCAGGAGTTAGACATTAATCCGAAACGGGC
GATGAAGGTGATTGCGGCATGCTCCGTATCCCTGAGTAATCGCGCATACT
TGTTGGGGCTGATGTTGAAGGAACGAGGGAAAATCAACGACCACAGTCTT
CGCGAAGGAACACTCAACCGGACGACGGTCCCCGTCGCCTTGGTAATGTG
GGGTAGTACCTCCATCCCCGTGGAAGGATCGATGGTTTTCTGACCCGCAC
TCGTCGAAGAAAATATGTGCGTTTTCGTACACTGTCAAGCCATGAAAACG
ACGTAGAAAACGGCAAGGTACAACAAAGTTTAGGCGACAGGCATATCAAG
CGTTATCAAACGTACGTCGGAAGTATCGTCCAAAGACGCTCGGTGGCAAA
CATGGAGTCAGTGTAGCCGACACGTGCAACACTTGGAGACGCAGCAGCAG
ACATGCGACGGCGCCACGCAGCGCTGCTGCACACAAAAGCAGTTCAGGTG
ATCAAGATACGATGCGTACGCTCGGGAAAAAAACACAACAAAGCAGTAGG
AAAACACGCGAGGCTAGGAGGCACCGACAAACAGCAGGTGAAACTTTGGT
CGGAGGCAGACACGCAACGGCGGAGACAACAAAAGGGGCGCAAAAAAAAG
GAAGTCAGACACACATGACGCCGGACACGCCTACTGCTGCACAAAAGAAG
TTTAGGCGGCAAACACACAGTGCGTACGCTCGGAATTAAAACACAACAAT
TGAGTAGCAAATCACGCAAGGCTCGGAGGCACAGACAAACAGCAGCCCAA
ACATGCAAGGCTCGGAGGCAGACACGAGCAAACAAAACGCTGCTGCTATG
AACACAAAAAAGAAACTCGCCAGCTTTTCCCGTGTTGGGGTCTGTCTGCC
CTGTCGAATCCAATGGACACACAGTAGTCCACCACTGAGCCGAGGCACGC
GATGCAGGCGAGCTCCGACTCAGATACCGAGCGATCGGGTCCGAAGATGT
TGGCCGAGAATGCGCAACTGCTAGTGCCGGCGGCGCGGTTGTTGTTGCTG
CAAGTGACAAAGTACCTATTCGGTGAAATATGGCGGACAATTTTCTCATT
CAATGAGCGCAGTTAAACCTGTACCGCACAGCAGGTGCAACTCGTGCACG
CGTGTTAAGGCGCTCGCCCCGGGAACTGGGAGAAGCCCACGCCCGGAGCG
AAGGGGTAGCGCGGGCACTTCTTGGCGTGCGCACGATCAACGGGCGTGAG
AGGAGGTCCAGTGAGCTGTCTTTCAGACCTTGTAGAAAACAAGATAATAA
CAACGACACCTCGGAGAAAATACAATACGACCTTCACTGCCGTTGTAAAG
ACTATGCATTTCAACAGCCATTTGCGGGGGACTTGTTCCCAAATGGTAGT
CTTTCTTTGAAATCATGTTTTTTTCAAATAAAATCAGACGCCCGACTTTG
TGCCAAACCGGCATAGAATCGGGCCAATTTTGTATGCGCAACAACACAGA
ATCGTGTTTCGGTTGCGAGTGCAGTAGGGATTACACAGCCCTCTCGAACT
TGAGCGCAATGCCGTGTGCGGCAGGGCATCGCTGCAAGTCGCCGAACAAT
ACACCAAGCCCCCCTTTCTACACAGTACATCGGTGTCGCAAGTGTGGCGA
GTACCTCCACGGTATCTGTGGTGTGCAAAACCCGGAGAGTGACATTGAGT
CCAAACGCGTGTGTGGCGTGGAGTGCTCTGCTGTACAGCAGCCGGAGGGT
AAGAAGAAGGTGACCGCGAACCCATCGCGGAGCACACCTCTCAGCTCGTA
AAGTGGTGGCTCGTCATCCACTGCCAAATCTGGAGATGGCAACAACAACG
CCGGCGCGACTTCCAACAAGCGCACTGGGGGCCAAAAACGTCCAAACCTG
ACTCTGCACGTGAAGATGGACGTGCTCGATCACCTCGACAAAAAGGTGAA
ACAAGTTGCTGTGGCGGAGACGTTTGACATTTCTCTGAGGACTGTCATGC
AAATCGAGACGGATGCGCCGAAAATAATAAAGCAGATGGAAGAAAGATCC
AAGGGGGAAGGAGCTAAGGGTCAAAGGGTCCACGACGCCCAGAGGTATGC
GTGAAATGTACATTCAACTACTCGTATTATTGATACATGGCAGTGTATGT
GCTTAGTAATACTCGTATTATGTTCATGTCGTACGAGGTGTATACGCAGC
GCGGCGTTGACAGCAGTGACAGACATAAACATGTGGTTGTGTGTCCCGTT
GTAAATGCGTGTTTATCAATTACTGACTGCATTGCGAATGCTTGCGTGGC
TCTCGCCTGCCCCCTGTGTGGAGCAAGGGCACCGCCTCCCGTGTGCGCTG
CGGCAACTGTATTTTGCAGCAGTGGCATACATACCAACATATACATGTGC
ATATTTTAGGAAAAGAAAAGGTGACAGCGGTGCACCCGTGAAAAAAGCGT
GATCGTTATACATCTGGTACGATATATTTTGATTTTTCGCAGACGAGTAT
TTGTTGGAATCAAACACGAGGCACCCGTCCCCAACACCCCAATGTACATG
TTTTGCCTTGCCTGTACGCGTGTGCACTCATCTCGCCTACGGTGTACAGC
AACTCTCACTTAGCCACGTTCGTTCGTTGTTTGCACGCGATGTCAACGAT
ACTCACTTTGACCACCGTGATACGACCAACCCCACGCGCGCTACACCAAA
CCGTTGAATGAACGGGTTCTGAGCGTGTTGGAGGAAGTGCGGACTGCGAA
GCTCTCCATCACCCGAGACACCCCACGGACTTTCGGACACAAGGCTCGGG
ACCAACTGGTTAAGAATGCGAAGGCCGACGAGGAGCGCGACTTGTACAGT
GGATTCACAGCTAGCGAACACTGTGTGAAGAACTTCTTCACCCGAAACGG
CTTGAAGAGTTTGTTTCAACATGGCGAAGCGGGCAGTGTCGATGACCAGG
CCATCGAGGCTGGCATGGTGGTCATCCGCAGGACATGTGAAGAGTACGAT
GTGGGTATCTCTTCAACGTGGACGAAACCGGCCTTTTCTTCCGGATGCTG
CCCCGGCGAACATACCTCGCGCCAGGGGAGGACCGCAAGACTGAAAGAGG
CGTCAAAGGCATGACGGCAAAGGATCGCCTTACGGTTTACGTCTGTATGA
GAGCCAGCGGTACGGCAAAGATGCCGCTGGCCTTCATTGGCACGGCCGAG
AAACCCAGGTGCTTCGGAAATATCAAGCAACTACTGCCGAAAACAACGTA
TACCTGCAGCAGGCGAGGACGTGGTCAGATGGCCGCACTTTAGGCATGTA
GTTCAACCACTTTCTCCGCTTCGTGCGCCGCGCCACATCGAAGCCTGTCC
TGCTTCTGATGAACAACCACAGCAGCCACGCCAACCTGGCGGATCCAAGC
GGCCAAGTCACGGTGATGGAGTACCCACCTAACTGCACGAGCAAGCACCA
GCTAGCGGACCAAGAGATTATTTCAGGCGTGCAAGAAGCTCTACAAAATA
CAGCTTTTGTCGATTCGTGTGGACACGATGGGAGCGGCCGGGCAGCTACG
CAAGCAGGCGAAGGAGCAAAAAATGAAGGCGGGCACGATGGGGTTGGTGC
AGGGATGCCAGCCACACGTCTTGGATGCCATCGAGCTGGGACGCACGACA
TGATATGGAGTTTCCAAGGAAGTCTTCGCAAGGTGCGTGTTGTGTGCAAC
CGCTGAGGGGCTTGCTATTGTAGTCGGGTAGTTTTGTCTGTAGAAAGGCA
GTCGTCAACGATCTGTTCGTAGATTGACTGTCGCATGCTGGTTAGCTCAT
GTCGGAGATCGAAAGTCGCGTGTATATGGCTTGCTATTGGCTCCACGTCT
TGCTTTCGTTTTCATTGACAGGTGCTGGATGAAAGCAGGCACACTCCCCG
CCCCGATGCAGGCCCAGCTGATCCAGGAAAGCAGCAAGCATAAGGTTCAG
GACGACAAATCGAAACATGAACCGAGCTCACGGAACTCATTTCAAGGCTG
AGCGTGGGAGTCAAATGTGCGGACGCAGCAGAGGACCTGTGCGATGGGCT
GGGGGGGCTGAATCTTGACCCGGGCCAGGGTCCGTCGCAAGCTTCTCTCG
AGGCCGTAGACTCTTGGTTCTCTCTGGAGGATGACGAAGAGACGGTCAAA
GCTATTGAGCTCAACCTTCAAGACGAACTTGTCAGCGATTGTGCGGTTGA
TGACGTAGACGGGGGTAGTGACGCGGGAGATTCTAGCGACTCCGGCAACG
ACGTTCGAGGGAAATAGTCAGAAGCCGTTGTGAAGCCGCCTTCGTACGCA
AGTGTAGCAGCAGAGTTTGGCAAGTTGGAGGCTACAGCGAGAATGAGTGG
CATGATGATGCCTCATTTTTCCTTGAGAAGGCAAGGATGGCATGGATCAA
AGCGCATGCCTGTAGCAACAACAGGCCGATGTTCGCAGTTTTTTTGACGC
ATGGTTGTACATGTGCGTACAGGTCTTCAGTGCTCTGGAAGACTTGAATG
GGTGAATCGTTCCGAGGGAGGGCCGCAATGTGCAGCCTTAACCTGCGCGG
AAGATTTTCCTTGTAAGTAGGTCGTAGGGCGTTCGTTGTCTTCAGAGCAA
GGGTGCGTCAAGCACGGGCACAGGGTAGGGGAGACAAGACGGTTGTATAC
GGCTGGTGCCATAAATTGCTCTACCTGCATACGCGCATGCAAATCTCTCA
ACGTTCCCAGAACCACGTGGTTTCACGCCGACTGGGTGGTTTGTAGGAGA
AATGGTACCTGGTGATTTTCCCCGATGCCGGACCGACATGAAATCGATTT
TATGCCAGATCGATTTCATGCCGATCTTTTTCAGTGGTACACTAGGCGGC
ATAAAATCGGCCCCCCTACTGTACTGTAAGTTCTGTAGGGTTTTGGAAGG
GTCACAGAAACGCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1176:37261..43725-

>mRNA_P-lacustris_contig1176.1335.1 ID=mRNA_P-lacustris_contig1176.1335.1|Name=mRNA_P-lacustris_contig1176.1335.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1152bp|location=Sequence derived from alignment at P-lacustris_contig1176:37261..43725- (Pleurocladia lacustris SAG_25_93)
ATGGACGTGCTCGATCACCTCGACAAAAAGGTGAAACAAGTTGCTGTGGC
GGAGACGTTTGACATTTCTCTGAGGACTGTCATGCAAATCGAGACGGATG
CGCCGAAAATAATAAAGCAGATGGAAGAAAGATCCAAGGGGGAAGGAGCT
AAGGGTCAAAGGGTCCACGACGCCCAGAGGTATGCATGGACGTGCTCGAT
CACCTCGACAAAAAGGTGAAACAAGTTGCTGTGGCGGAGACGTTTGACAT
TTCTCTGAGGACTGTCATGCAAATCGAGACGGATGCGCCGAAAATAATAA
AGCAGATGGAAGAAAGATCCAAGGGGGAAGGAGCTAAGGGTCAAAGGGTC
CACGACGCCCAGAGGTATGCCGTGTTGGAGGAAGTGCGGACTGCGAAGCT
CTCCATCACCCGAGACACCCCACGGACTTTCGGACACAAGGCTCGGGACC
AACTGGTTAAGAATGCGAAGGCCGACGAGGAGCGCGACTTGTACAGTGGA
TTCACAGCTAGCGAACACTGTGTGAAGAACTTCTTCACCCGAAACGGCTT
GAAGAGTTTGTTTCAACATGGCGAAGCGGGCAGTGTCGATGACCAGGCCA
TCGAGGCTGGCATGGTGGTCATCCGCAGGACATGTGAAGAGTACGATGTG
GGTATCTCTTCAACGTGGACGAAACCGGCCTTTTCTTCCGGATGCTGCCC
CGGCGAACATACCTCGCGCCAGGGGAGGACCGCAAGACTGAAAGAGGCGT
CAAAGGCATGACGTGTTGGAGGAAGTGCGGACTGCGAAGCTCTCCATCAC
CCGAGACACCCCACGGACTTTCGGACACAAGGCTCGGGACCAACTGGTTA
AGAATGCGAAGGCCGACGAGGAGCGCGACTTGTACAGTGGATTCACAGCT
AGCGAACACTGTGTGAAGAACTTCTTCACCCGAAACGGCTTGAAGAGTTT
GTTTCAACATGGCGAAGCGGGCAGTGTCGATGACCAGGCCATCGAGGCTG
GCATGGTGGTCATCCGCAGGACATGTGAAGAGTACGATGTGGGTATCTCT
TCAACGTGGACGAAACCGGCCTTTTCTTCCGGATGCTGCCCCGGCGAACA
TACCTCGCGCCAGGGGAGGACCGCAAGACTGAAAGAGGCGTCAAAGGCAT
GA
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