mRNA_P-lacustris_contig1172.1318.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1172.1318.1
Unique NamemRNA_P-lacustris_contig1172.1318.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1172.1318.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 4.410e-51
Identity = 144/216 (66.67%), Postives = 147/216 (68.06%), Query Frame = 1 
Query:    1 MGEFGSNRAAWLIAGFLGRKFMKDLLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRRKSAAGALTPRSSAPGGFTTNGTLQQRR--PGDRLGGIPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASVAAAPKEALASELWAWLGGVGSGR-SCSGDRSRRLPSQRSSGASGGARFKTAWAMCLDETLSRLP 639
            MGEFGSNRAAWLIAGFLGRKFMKD LGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLR                              PGDRLGGIPS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AAPK+ALASELWAWLGGVGSGR SCS DR +   S RS            W       +  LP
Sbjct:    1 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGXXXXXXXXSGEWRGAFYNRMGNLP 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1172.1318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI4.410e-5166.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1172contigP-lacustris_contig1172:36116..41051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009520.1
Exons4
Model size2172
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1172.1318.1prot_P-lacustris_contig1172.1318.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1172 36116..39536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.069563-CDS-P-lacustris_contig1172:36115..361841622815485.069563-CDS-P-lacustris_contig1172:36115..36184Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 36116..36184 +
1693493566.4533582-CDS-P-lacustris_contig1172:36115..361841693493566.4533582-CDS-P-lacustris_contig1172:36115..36184Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 36116..36184 +
1622815485.0828524-CDS-P-lacustris_contig1172:36550..366641622815485.0828524-CDS-P-lacustris_contig1172:36550..36664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 36551..36664 +
1693493566.4645634-CDS-P-lacustris_contig1172:36550..366641693493566.4645634-CDS-P-lacustris_contig1172:36550..36664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 36551..36664 +
1622815485.092816-CDS-P-lacustris_contig1172:38606..390201622815485.092816-CDS-P-lacustris_contig1172:38606..39020Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 38607..39020 +
1693493566.4734838-CDS-P-lacustris_contig1172:38606..390201693493566.4734838-CDS-P-lacustris_contig1172:38606..39020Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 38607..39020 +
1622815485.1027098-CDS-P-lacustris_contig1172:39476..395361622815485.1027098-CDS-P-lacustris_contig1172:39476..39536Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 39477..39536 +
1693493566.4831328-CDS-P-lacustris_contig1172:39476..395361693493566.4831328-CDS-P-lacustris_contig1172:39476..39536Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 39477..39536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.115838-UTR-P-lacustris_contig1172:39536..410511622815485.115838-UTR-P-lacustris_contig1172:39536..41051Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1172 39537..41051 +
1693493566.497093-UTR-P-lacustris_contig1172:39536..410511693493566.497093-UTR-P-lacustris_contig1172:39536..41051Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1172 39537..41051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1172.1318.1

>prot_P-lacustris_contig1172.1318.1 ID=prot_P-lacustris_contig1172.1318.1|Name=mRNA_P-lacustris_contig1172.1318.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=219bp
MGEFGSNRAAWLIAGFLGRKFMKDLLGRWSVIPVLAVAACLWNKWRARQL
EGKLEQCKLEEVRRSTRRQLQLLRRKSAAGALTPRSSAPGGFTTNGTLQQ
RRPGDRLGGIPSSSTSTTPKQQQAQRHHMSPTAAAAAVAAANGNSSVASV
AAAPKEALASELWAWLGGVGSGRSCSGDRSRRLPSQRSSGASGGARFKTA
WAMCLDETLSRLPGERFT*
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mRNA from alignment at P-lacustris_contig1172:36116..41051+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1172.1318.1 ID=mRNA_P-lacustris_contig1172.1318.1|Name=mRNA_P-lacustris_contig1172.1318.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4936bp|location=Sequence derived from alignment at P-lacustris_contig1172:36116..41051+ (Pleurocladia lacustris SAG_25_93)
ATGGGCGAATTCGGGTCGAACCGAGCAGCGTGGCTCATAGCTGGCTTCCT
CGGGCGCAAGTTCATGAAGGTGCAAAGGATGGTTGTGCCCCTGCATGGAA
TGTGATGTCCATCAAAGAGTCGCTATCGAAGCCATTTGGTTTGGAGGCGG
CTCTGAGTTGTGAAATTCACGCACTGCAAAAGAGATACCTTGGCTGTTGC
TACTGCCGGTGCTCGTGTCAATTCACTCGCTCTCCGGAAATAGCAATGAG
TGTGGTGCGTCCACCAGCCACGACTATGTTCGTTCCTCCCCAGCACGCAT
TTCTGGTCCTCTGATCGACGTGTGTTGTCGTTCTTCTCCTCTTCGTTGAG
AGGAGAAGCAAAAATCGTGCGTAACGTGCGTGTCTCTCGTTTGGTGTGCG
CTGACTGCTGTCGCGTCCCGGTGGTTGCATGACAGGATCTCCTGGGGCGA
TGGAGCGTTATCCCGGTGTTGGCCGTCGCTGCGTGCTTGTGGAATAAATG
GAGAGCGAGACAGCTTGAAGGGAAGCTGGAGCAGTGCAAGCTAGAGGAGG
TAGGCCTCTAGGCCCGAAGTCGTCGAGAGGGTACGGATGAAATGTCTCAG
GGCGACTCTACGGAGGTTTGTGCCCATACCGCCGTTTTCGCTCATCCCGA
TCAATTGTTGAAGTCTCTCTCAGCTGTTTCGTGAGCTTCTGTGATCGCCA
CTCCTGCTAAAAAATGATTCCATTGTCTGGGTTGATTCATGCTGCTATAA
CGGCTGCTGCGTACTGCTGTTTTTTTTTCGGCCCTCTGTGGCTCCAAGGA
AAGGTGACGCTATCTTTTTTTATATTGAATGTTCAATCCTCTCACTAGGT
GACAGGCGTGCGTGTACATCAGGGGGCTCTCTGCGGTTCCCCCCTTCGCG
ACAATTGATTACGATGCGGTGCTTACCTCTCCCACACCATCAGCTCAGAG
AGGGACGGGAGCGGTGTTGTGTGTTCCACTCATGATTTCGTTGGCAATAA
CCCTTGCATATGGACCTCGTAAAATACGCTCTGCTAAACGTTGTTGCCGT
GTAGTTGCGCGCCCGCGCGGATTAATATTTCTTGTTTTTTTAGTTGTTCC
CCGTCTCTGTTTATGACTACTACTGCTGTTTTGTATCTGCACATAGATGA
TAAATGTGCCCATATGTAGGCGACGTTTTTGGTCGCCACTCGTTGAATCC
TTAAACAGAAAAGCAACTGAAAGGCAAGTCGAGTCAAGCCAAAGCACGTA
AACCATGTATTATCGCGGCACAGGAGCTGTGCACAAGGCCCGGTATTGTT
TTATTTCGTCTCCATTTGCACAAAAATTAAAAATAAATCAACTCCCAACC
GAGCAACCAAACAACCAAGAATATCTATATTCTTTAAAAACAAGATAAAA
CTCGGCTGCAGTTCGTTTATTTGCACAAAAATTAAAAATAAATAAACATG
CCAACCGAGCAACCAAACAACAAGACAAACAAAACAAAACAAAAATTTCG
CCTCTATTTTGACCGGTCTTTATCGGAACAAATCTTCATTCGCTCAAATC
TTGTTTTTTTCGACCATTTGGGCAGTCTGCCTCGGGATCGATTCTGAATC
AGCTGTTCGGCCGTCGGGAAAAGTCATCCAGTTCATTGGTGTGTCCACAG
ATCGCCTATTTGCTCAGCCTGGGTCTAGGTTAAAATTTTTCAATCCAAGC
AACATTTGCGAAAATTCCCAAGATTTGcaGGAGAAGTGTCTCAAAAGCAA
ATCTTGGGCCCACCATTTGCTTTTTGAGACACTTCTCGTACAAATCTTGG
AAACTTTCTCAAGTCTTGCTCCACTGAAAAATTTCAAACCCAGACCCAGG
CTGAGCAAATAGGCAATCTGTGTACACACCAATGAAGTGGATGACTTTTC
CCGACGGCCGAACAGCTGATTCAGAATCGTTCGCGAGGCAGACTGCCCAA
AGGGTCGAAAAAAACAAGATTTGCAGAGAGAAGATTTTGTTCCCATAAGA
CCGGGTCTGGGGCATGTGTGCCTGCTCTATATGGGGCATGTGTGCCTGCT
GTCTTCGATACATTCTCCTGTAGGCGGCAAGGAGGCAGTGTTTTTTGTGT
TTTTGTTTGTGCAGTAGGTTGCATAAGATGTCACATTTTCACAAGGTACC
TCACCCCGTCAAAAAGTCAGATAAAGTATACCATTAGCTAGGTACGTGAC
ATGAAATATCACTCCCCCTACCCGATACTATACCGTTATGTTATCTTCTG
CAACCGACGCCATTTTTGCAATGGTCTACGTGGAGCCTGTTTACCCAAGA
TATCACACAGGGCAATATCCCGTATCCCGTGCTCTTCCCCGGGAGATCAA
TCACCGCTCTCGTCCTCGTTTCCACGGAATGTATATCTACCACACAAATC
ACAACCCTATGCATAGCACGACAAACTCCGATCTCCGATCAAACTAGACC
GCAAACTGCCATCTCTCGTTTTATTGCTTCGGTGTATTCAGGTACGCCGG
AGCACACGGCGACAGCTGCAGCTGCTCCGCAGGAAATCGGCGGCGGGGGC
ACTAACTCCCCGCTCCTCAGCACCGGGAGGCTTCACAACCAACGGCACGT
TGCAACAGCGGCGACCGGGTGACCGACTCGGTGGCATCCCCAGCTCCTCA
ACCTCAACGACGCCGAAACAGCAGCAAGCACAACGACACCACATGTCCCC
GACCGCGGCCGCCGCCGCTGTCGCGGCCGCTAACGGCAACAGCAGTGTCG
CATCAGTGGCAGCGGCGCCTAAAGAAGCTCTGGCGTCGGAGCTGTGGGCG
TGGCTAGGAGGAGTCGGGTCTGGGCGATCGTGCAGCGGTGACCGGTCTAG
GCGTTTGCCGTCGCAACGTTCCTCGGGGGCGAGTGGCGGGGCGCGTTTCA
AAACCGTGAGTCTTTTCCTTCGTTTCGGTGTGAGCCTTTTCCTTCGTTTC
GGTGTGAGCCTTTATTATGTTGCTGTTGTTGGGCGCTTTGGAGCGATTAT
AGGTATATCAACGTGTGCAAGCGAACAAAGACATGGCCGACCAGTCTATT
GGCTCAATATTTGGTTCTGTGTGCGCAATGTTGCTCCCCAGTAATTGCGT
GTAGAGGCAGGTAAGCCACCGCCTTGTACCACCACTACCCAAGTCGCTCG
CCCCCACCGTAGGTCACCGTTACCGCCCGGTAACCAGCGCAGAGAAAGCA
TGCACTCAAGTCACGGCCGTTACAACGTCGTCAGAGACGCGCAACAGGTT
GCCCTCCTGGAGTACTTCGATCCCATTCCATGCATGCCTCGCAACCCTTG
CCCCACCCTGCTTCACTCGCCACTCGTGTCCTTGGTCGTCAAATCGATCG
ATGAAATGCAGGCATGGGCAATGTGCCTCGACGAAACGCTTTCAAGACTG
CCCGGGGAAAGGTTTACTTGAGAGGAGGCCGCATGGGGTCGGGGGATCTC
GTGGTGGGGCACAAGCACCACCGTTTGGCGGTCTCGAGTCAGTACGCGAA
GAGGATGAGGCGAGCGTTATCACGACCTGATTTCTGGGGACGGAAGGCAA
GGCCGCACGCTTTCTCAGCTTGCGAACTGGCTTAGAGAAGTGGGAGGGTC
TTTAGAAGTGGTGGAAAAATATGTGATGTGTGTGTGATGTGCTTCACGTG
TTGGGTTTTTGCTTGGCTTGTGGGGGGGAAAGGAGTGGGTGGGTTTGATC
CCCTTCGATGGGAATGGTATCAACCCCCTTTGACGGGTGCTCTTCTCCGG
CCTCTCTTCCACTCTGACCTCGTCGCGGTCGCTCGAATGCTGCCCGGTGG
TTTTGTGTTGCGACAAATGTCATACTGCTGTTGCGTTTGGCAACAATCAT
ACCCCTCTGCTGTTGCCCAACAAAGTGATGCTGCCGTATCGATTTTATTT
TTATTCGCGTCGCCTTTCCTAGTAGCCTATCCACAGCACGCAATCCTGTG
CTTTTTGCGGCACTTGCTTTCTCGACGCGTTTGTCAGAATATTGAAGCCT
AGGCGGGCGGAGAAGCGTGGGATTAACCCGCGGTAAGAAAGTTTGTTCGC
TGTATGTGTCCGCTTGGCATTGGTGGACGGTTTTGCCGTCAAAAGCCGCG
AAAATCGCGCGCGTCGTACGATCACGTATTTGCGGCTATTGCTTGCGAAA
GGAACGGCGGACGTGCGAGTAGGGGGAGCTTGTTGCTTTATGCAATTTTT
TTCTCTTCTCACTCTTGTGCGATTTTTTCTGCGCATCCCTCATTTTTTTT
TTTTCACGCCAACTTTCGTGGGTACATTTATTTTATTTGTCTGTTTTTGG
TTAGTCGGCAGTGAAGAGCGACAAGAATGGTGTGCTATTGTGGTACTGTA
TGCTGTGTAGCCCGCGTGTCGCTGTTATGTTTTGATGAGCCTGTTTTATG
CGAGTGCGTTCTTGCTGTGATGCTGTTGCTTTCTGCGGTTACTGCGGAAA
GGGGCGGTCTACGAGGGAGAACGGGCTTGGCAGAGCTTGCTTTGATTTCT
GCGGCGTTACGCCGCAAGCTGTGTGGAGTGTATAGGGGGAAGATGGGCAG
GAATAGAGGGTTGGTTCATGTTGGCGCCACGCGTGCCCTTTCCTTTTACG
ATGCTCCGGGGGGCGTCGTCTGAACTTGTTTGTTTCGTATGCATAGGTAC
TGTAGTACTGTATCTCGTGTGTTGTATTCGTGCCCAGGCGTAGTGTCGAA
TCTTGCGGGTTACGAAAGTGATGACGACGTGGTGCGAATCAAACAATCGA
GTGTTGAAGAGAAACTTATATTCTACGAACGGCAACATTTATCTACGAGG
AAGAGGAACAATCTGTTGGAAACAAGCACAGCCCTCCTCGCGAGAAAACT
CTAGAACGGCTTGCGATCGCTTTTATCACACCACGGATCAAGAAACGAAC
AAGTGTATGTAGATGTCGATAGGAGGAAAAGCACGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1172:36116..41051+

>mRNA_P-lacustris_contig1172.1318.1 ID=mRNA_P-lacustris_contig1172.1318.1|Name=mRNA_P-lacustris_contig1172.1318.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1314bp|location=Sequence derived from alignment at P-lacustris_contig1172:36116..41051+ (Pleurocladia lacustris SAG_25_93)
ATGGGCGAATTCGGGTCGAACCGAGCAGCGTGGCTCATAGCTGGCTTCCT
CGGGCGCAAGTTCATGAAGATGGGCGAATTCGGGTCGAACCGAGCAGCGT
GGCTCATAGCTGGCTTCCTCGGGCGCAAGTTCATGAAGGATCTCCTGGGG
CGATGGAGCGTTATCCCGGTGTTGGCCGTCGCTGCGTGCTTGTGGAATAA
ATGGAGAGCGAGACAGCTTGAAGGGAAGCTGGAGCAGTGCAAGCTAGAGG
AGGATCTCCTGGGGCGATGGAGCGTTATCCCGGTGTTGGCCGTCGCTGCG
TGCTTGTGGAATAAATGGAGAGCGAGACAGCTTGAAGGGAAGCTGGAGCA
GTGCAAGCTAGAGGAGGTACGCCGGAGCACACGGCGACAGCTGCAGCTGC
TCCGCAGGAAATCGGCGGCGGGGGCACTAACTCCCCGCTCCTCAGCACCG
GGAGGCTTCACAACCAACGGCACGTTGCAACAGCGGCGACCGGGTGACCG
ACTCGGTGGCATCCCCAGCTCCTCAACCTCAACGACGCCGAAACAGCAGC
AAGCACAACGACACCACATGTCCCCGACCGCGGCCGCCGCCGCTGTCGCG
GCCGCTAACGGCAACAGCAGTGTCGCATCAGTGGCAGCGGCGCCTAAAGA
AGCTCTGGCGTCGGAGCTGTGGGCGTGGCTAGGAGGAGTCGGGTCTGGGC
GATCGTGCAGCGGTGACCGGTCTAGGCGTTTGCCGTCGCAACGTTCCTCG
GGGGCGAGTGGCGGGGCGCGTTTCAAAACCGTACGCCGGAGCACACGGCG
ACAGCTGCAGCTGCTCCGCAGGAAATCGGCGGCGGGGGCACTAACTCCCC
GCTCCTCAGCACCGGGAGGCTTCACAACCAACGGCACGTTGCAACAGCGG
CGACCGGGTGACCGACTCGGTGGCATCCCCAGCTCCTCAACCTCAACGAC
GCCGAAACAGCAGCAAGCACAACGACACCACATGTCCCCGACCGCGGCCG
CCGCCGCTGTCGCGGCCGCTAACGGCAACAGCAGTGTCGCATCAGTGGCA
GCGGCGCCTAAAGAAGCTCTGGCGTCGGAGCTGTGGGCGTGGCTAGGAGG
AGTCGGGTCTGGGCGATCGTGCAGCGGTGACCGGTCTAGGCGTTTGCCGT
CGCAACGTTCCTCGGGGGCGAGTGGCGGGGCGCGTTTCAAAACCGCATGG
GCAATGTGCCTCGACGAAACGCTTTCAAGACTGCCCGGGGAAAGGTTTAC
TTGAGCATGGGCAATGTGCCTCGACGAAACGCTTTCAAGACTGCCCGGGG
AAAGGTTTACTTGA
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