mRNA_P-lacustris_contig1172.1315.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1172.1315.1
Unique NamemRNA_P-lacustris_contig1172.1315.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1172.1315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1172contigP-lacustris_contig1172:468..2443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1172.1315.1prot_P-lacustris_contig1172.1315.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1172 537..2443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.5289862-UTR-P-lacustris_contig1172:467..5361622815484.5289862-UTR-P-lacustris_contig1172:467..536Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1172 468..536 -
1693493566.1591043-UTR-P-lacustris_contig1172:467..5361693493566.1591043-UTR-P-lacustris_contig1172:467..536Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1172 468..536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.538885-CDS-P-lacustris_contig1172:536..5401622815484.538885-CDS-P-lacustris_contig1172:536..540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 537..540 -
1693493566.1728904-CDS-P-lacustris_contig1172:536..5401693493566.1728904-CDS-P-lacustris_contig1172:536..540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 537..540 -
1622815484.54934-CDS-P-lacustris_contig1172:2324..24431622815484.54934-CDS-P-lacustris_contig1172:2324..2443Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 2325..2443 -
1693493566.1826682-CDS-P-lacustris_contig1172:2324..24431693493566.1826682-CDS-P-lacustris_contig1172:2324..2443Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1172 2325..2443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1172.1315.1

>prot_P-lacustris_contig1172.1315.1 ID=prot_P-lacustris_contig1172.1315.1|Name=mRNA_P-lacustris_contig1172.1315.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=41bp
RTNYGTDKRKSLRTTCVLGWSPSVSLEPALFHITPAASSW*
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mRNA from alignment at P-lacustris_contig1172:468..2443-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1172.1315.1 ID=mRNA_P-lacustris_contig1172.1315.1|Name=mRNA_P-lacustris_contig1172.1315.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1976bp|location=Sequence derived from alignment at P-lacustris_contig1172:468..2443- (Pleurocladia lacustris SAG_25_93)
AGAACTAACTACGGAACTGACAAGAGAAAGAGTCTTAGAACCACGTGTGT
GTTGGGCTGGAGCCCATCTGTGTCACTGGAACCCGCATTATTTCACATAA
CACCGGCGGCGTCGTCCTGGTGAGAGCTCATTTCTTTTTTTGTTCAGTGG
TTTTTGTCCCTTTGGCTGGCTGCTCAGGGTCTTATGTCTGATTCTGTATC
ACCAGCTGGCAGCAATGACTCGGCTTCATCGAGTCCGGTTTCGCCTTCCT
CGCCTACGAGCATGCATGGTAGACCCGAGTGCCCTCGAGAGTTCAATCGA
CACGCGGACCACGACATCTGGTGACCTACTGCTGTATCACACCGTTCGCA
CATCAGCATCTAGCCAGTTTGATCGCATGACGACCGACACTAGCGTCAGT
GATAACAGCCACCAGATCGATTCGAGTCACGCACATGCATTCAGTCGATT
GAAGAGAGAAGCGCACATGTTGTTAGCGATGTAGCCATCTCTGCTGCCCC
ATATCGTTCCACCATCTCTCACGGAGCAAGTGAGTTGCTGCTGACTGCTC
CCAGAGCCAGCGCGCCTGGGTGCGCGCTGCGTGCTTCTGGGTTGGACCAA
CCGCTGGCTAGCGAGGAATCTCCAACCACCCGAGATCCGATTGGAATTCT
GCAGGCCACCCAGGATGGGGTGCTTCAGGCCACTCGCGATTTCAGAGCCG
GCGCGCTCACATCGTCTTCATCCTTTGAGGTTACGCACACCCCCGACGCT
CCGCGAGCCGGTGCGCTCCCCGACGTCCTACGAGCCCGCGCGCTCCCTGC
GGTGATTGCTGGTGCGCGCTCTGCGATAGCCGCCCTCGGGTTTGAGCTCA
CCACCCAAGAGGTTCGAGATGACGCAGTTCATGGACACGTTGGCCCCGAG
ACCCAACAGGAGCGGGATTCTGGGCACCTCGGCTCCGCGCCTCAGGACGG
TACTGCTGTACCCAGGCACCTGGACACCGCGTCACAAGACGCACGAGCGG
GCGCGCTCGCAGCAGCACCCCCTCGTTGTTGGCCGGGCTCCGGACGTTGG
GCTCGTCGTGCCTGCTGCTCGGGATGCAGGCTTCGAATCTTTTCTTTTGC
AGAAAAAGCACGCCCTTGCAACCCACCCTTCTGACCTCATGTCCCTGCGC
GGACAACGGACGTTGGCCCCTCTTGCAGCGCCACCACCGCGACAGGCTGC
GCCGCGTACGGATACCCCTAGGCCAGCACGTGTCATGCACCATTTTGCTC
GTGCCGAGGCGGCGTCCTCCTATACAGCAGTGCCCCGTGAAATTGCTTTT
GTCGATCCCCAACCTGTGCAAGAACCACTTGAAATTAAAGTGCATCCTCT
TTTGGTATCTGGCTCGAATCCAACTTCAATGCCGATTTTGCGATTTTCGC
GCTTTCACACTTCAAGGCTAGGCCACCGAGTACCCCTCTCTGGCAGTACA
GCAGTTGTTGTCGAACCGTTCAAGCATTCCTTTGGCTCCACCTTTGACGC
TTCCCCCTGCTGCGCCCCACTTCAGCGCGTCTGTTGACCCACGCCGCTTT
GAAACAGCACCGAGGACGAATTTTTCAATTTCGCTGCAACCGCCCGCCAC
TCGCGAAAAATCGAGTCGAGTTTGACTGCACCGGTTTGTTCTGCTGCTCC
ACCTCCACAGATGACTTCTGAAAATCGAGTCGAATTGTTGACCCAACTCT
TCCCCCGACGACGCTTCGACGCTCAAAACGTTTAGCCAGCCGGGCGAACC
AGTCGGCAACACCGGATGCTCCTGCAGTTTCTTCACCGCGGGTTGAGAAT
GTCACCGGCGATGTTGCACCCCGCCTTGAAATTTTCGCTGAAATCAGCTC
CCGCCGCACTTTCCTGCCCCCCTGCCGATTTTCTCGACCTCCACCGAGGA
CAGGTAGTGCGGATCGGACATCACCAGCCAGCATGTCCGACACAGAACGA
GCTGCGATCATCGGCTGAGACCGGCG
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Coding sequence (CDS) from alignment at P-lacustris_contig1172:468..2443-

>mRNA_P-lacustris_contig1172.1315.1 ID=mRNA_P-lacustris_contig1172.1315.1|Name=mRNA_P-lacustris_contig1172.1315.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=246bp|location=Sequence derived from alignment at P-lacustris_contig1172:468..2443- (Pleurocladia lacustris SAG_25_93)
AGAACTAACTACGGAACTGACAAGAGAAAGAGTCTTAGAACCACGTGTGT
GTTGGGCTGGAGCCCATCTGTGTCACTGGAACCCGCATTATTTCACATAA
CACCGGCGGCGTCGTCCTGAGAACTAACTACGGAACTGACAAGAGAAAGA
GTCTTAGAACCACGTGTGTGTTGGGCTGGAGCCCATCTGTGTCACTGGAA
CCCGCATTATTTCACATAACACCGGCGGCGTCGTCCTGGTAGGTAG
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