mRNA_P-lacustris_contig1171.1313.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: D8LU97_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU97_ECTSI) HSP 1 Score: 729 bits (1882), Expect = 2.350e-256 Identity = 392/513 (76.41%), Postives = 437/513 (85.19%), Query Frame = 2
Query: 116 WITSWNMVVLLICCSP--MSTAFQSCGTLSGGYQRHDLQQVPPLAMDAAVEASGSGSVTVKIKRSTRNPVDTSQLSGCGSTFYASGYDENGNKDGLVLMQTISGVLDDGREVIGVVRPGKYPSGSSVLVEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAARALGADWTVDFRKESYSETLQDFSAVVDTLGREKEGAQTLLKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNAEAVGLVSQVSALVTTGQLQLGAVGTDYVGMQEYIEALAWPKDIETGLRYGFPGKTNRAWGWLGGDSLDDGLPWEEDEEXXXXXXXXXXVEASVGGKGDGGGSAATAGGVAVLKNREDLRALVGQGGTMVFVSSRSCRACKYLAPFYRKLARRQQRVMFGRVDASSYPELARVLGLNAVPSFVTFREGEVVTSTATSNKKKVEKLVEELLYE 1648
W TS ++LL+CCS MSTAF CGT+SGG HD QQ+ A A GS +++V+IK STRNPVD QLSGCGSTFYASGYD+NGNKDGLVLMQTISGVLDDGREVIGVV+PGKYP G SVLVE RH++DKP GL W KAAMLPFL ++CLWPLSEAGFG SMDAGQTF+VTGGHGSLAPF+VAVLKAWG RVALATT+SEG ARALGAD VDFRKESYS+ +QDFSAVVDTLGREKEG Q +LKEA+GA Y+S QP+ILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPN EAVGLVSQVSALV G+++LG VGTDYVGMQEY+EALAWPKD +TGLR+GFPGKTNR+WGWLGGDSLD+ L WE DE XXXXXXXXXX GG+ + + G V LK+REDL+ LV +GGTM+FVSSRSCRACKYL PFYRKLARRQ++V+FGRVDASS+PELAR LGL AVPSFVTFREGEVVTS ATS+KK +EKLVEELLYE
Sbjct: 4 WKTS---LLLLMCCSSFRMSTAFL-CGTISGG-SYHDRQQLVVAAAMEAAATRGSSTISVQIKHSTRNPVDAYQLSGCGSTFYASGYDQNGNKDGLVLMQTISGVLDDGREVIGVVKPGKYPGGGSVLVEERHLVDKPQGLGWDKAAMLPFLAISCLWPLSEAGFGDSMDAGQTFVVTGGHGSLAPFVVAVLKAWGGRVALATTKSEGGARALGADLAVDFRKESYSDVVQDFSAVVDTLGREKEGPQDMLKEARGAEYVSLQPSILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFPGKTNRSWGWLGGDSLDERLAWE-DEXXXXXXXXXXXXXXXXGGR-----AVSPTGEVVGLKSREDLKDLVREGGTMIFVSSRSCRACKYLTPFYRKLARRQEQVLFGRVDASSHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLYE 505
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A6H5JDM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM2_9PHAE) HSP 1 Score: 373 bits (957), Expect = 9.530e-121 Identity = 202/264 (76.52%), Postives = 230/264 (87.12%), Query Frame = 2
Query: 857 LLKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNAEAVGLVSQVSALVTTGQLQLGAVGTDYVGMQEYIEALAWPKDIETGLRYGFPGKTNRAWGWLGGDSLDDGLPWEEDEEXXXXXXXXXXVEASVGGKGDGGGSAATAGGVAVLKNREDLRALVGQGGTMVFVSSRSCRACKYLAPFYRKLARRQQRVMFGRVDASSYPELARVLGLNAVPSFVTFREGEVVTSTATSNKKKVEKLVEELLYE 1648
+LKEA+GA Y+S QPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPN EAVGLVSQVSALV G+++LG VGTDYVGMQEY+EALAWPKD +TGLR+GFPGKTNR+WGWLGGDSLD+ L WE+++EXXXXXXXXXX G + + G V LK+R+DL+ LV +GGT+VFVSSRSCRACKYL PFYRKLARRQ++V+FGRVDAS++PELAR LGL AVPSFVTFREGEVVTS ATS+KK +EKLVEELLYE
Sbjct: 1 MLKEARGAEYVSLQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFPGKTNRSWGWLGGDSLDERLAWEDEDEXXXXXXXXXXXXXXXGR------AVSPTGEVVGLKSRQDLKDLVREGGTIVFVSSRSCRACKYLTPFYRKLARRQEQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLYE 258
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A6H5J9Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q2_9PHAE) HSP 1 Score: 311 bits (796), Expect = 2.980e-97 Identity = 167/235 (71.06%), Postives = 190/235 (80.85%), Query Frame = 2
Query: 35 MKCAVVPFPLSRRRRRWSWLMKSRLLRWITSW--NMVVLLICCS-PMSTAFQSCGTLSGGYQRHDLQQVPPLAMDAAVEASGSGSVTVKIKRSTRNPVDTSQLSGCGSTFYASGYDENGNKDGLVLMQTISGVLDDGREVIGVVRPGKYPSGSSVLVEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSE 730
M CA++PF S+RR R SWL RLL + W ++++L+ CCS MSTAF CGT+SGG D Q V AM+AA GS S++V+IK STRNPVD QLSGCGSTFYASGYD+NGNKDGLVLMQTISGVLDDGREVIGVV+PGKYP G SVLVE RH++DKPP L W KAAMLPFL ++CLWPLSEAGFG SMDAGQTF+VTGGHGSLAPF+VAVLKAWG RVALATT+SE
Sbjct: 1 MNCAIIPF--SQRRGRCSWLQVIRLLGCMICWKTSLLLLICCCSFRMSTAFL-CGTISGG--SCDKQLVVATAMEAAA-TRGSSSISVQIKHSTRNPVDVYQLSGCGSTFYASGYDQNGNKDGLVLMQTISGVLDDGREVIGVVKPGKYPGGGSVLVEERHLVDKPPCLGWDKAAMLPFLAISCLWPLSEAGFGDSMDAGQTFVVTGGHGSLAPFVVAVLKAWGGRVALATTKSE 229
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A835YMJ9_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ9_9STRA) HSP 1 Score: 272 bits (696), Expect = 4.470e-79 Identity = 181/477 (37.95%), Postives = 264/477 (55.35%), Query Frame = 2
Query: 284 TVKIKRSTRNPVDTSQLSGCGSTFYASGYDENGNKDGLVLMQTISGVLDDGREVIGVVRPGKYPSGSSVLVEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAARALGADWTVDFRKESYSETLQ-DFSAVVDTLGREKEGAQTLLKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPN--AEAVGLVSQVSAL-VTTGQLQLGAVG----TDYVGMQEYIEALAWPKDIETGLRYGFPGKTNRAWGWLGGDSLDDGLPWEEDEEXXXXXXXXXXVEASVGGKGDG---GGSAATA-------------GGVAVLKNREDLRALVGQGGTMVFVSSRSCRACKYLAPFYRKLARRQQRVMFGRVDASSYPELA-RVLGLNAVPSFVTFREGEVVTSTATSNKKKVEKLVEEL 1639
TV++K S R+ VDT L G G K LVL+Q+I G +DG+EVIGVV P G+ V V+ +++KP G +++MLP L + L AG G+ VTGG+ +A F++ +L WGA V T + A GA VDFR +S+++ + VVDTLGRE + + LK A GA Y+S P ILK+AV+DG++FG GKI+ Y+ + ++ ++LP+ ++G+V+ V+ L ++ LQ G TD V MQEY+EALAWPKD +TGLRYGFPG+T+ W + ++ EDE+ + G G G GG+A A GG+ + + DL A + ++FVSS SCR CKYL +YRKL + + + F +DA S P+L R LGLNAVPSFV F+ G+++ + +S+K K+E+LV++L
Sbjct: 25 TVEVKYSFRSVVDTKLLGEAGLRRI-------GAKPDLVLLQSIVGKTEDGKEVIGVVEPQTLRKGAKVEVQETMLVNKPQGWRVEESSMLPHLAITSGTALMAAGITQDTAPGKHCAVTGGNSPMAAFMMCLLAGWGASVIAVTNARKEACLKCGASTVVDFRADSFADEAKGSLDLVVDTLGRESKSSIAELKRALGAQYVSVMPEILKLAVDDGVIFGGGKIMAYRSALQGGNNHAFWLPDDGGASMGMVNAVAELSASSPHLQKWGAGAGGSTDMVSMQEYLEALAWPKDRDTGLRYGFPGRTSEYWMEPSAEEVE-----VEDEQVAVAYRQQPTLLQQFSGAGAGATAGGAAQAAKGGKKGASSKPIGGGIKEVASAADLAAATHEDKAILFVSSGSCRVCKYLGTWYRKLEPQFEDIEFLHMDAQSDPQLVGRQLGLNAVPSFVAFKGGKMLATVTSSDKTKIEELVQKL 489
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: R1FNI8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FNI8_EMIHU) HSP 1 Score: 97.4 bits (241), Expect = 1.510e-18 Identity = 102/308 (33.12%), Postives = 146/308 (47.40%), Query Frame = 2
Query: 287 VKIKRSTRNPVDTSQLSGCGSTFYASGYDENGNKDGLVLMQTISGVLDDGR-EVIGVVRPGKYPSGSSVLVEARHVI--DKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAARAL---GADWTVDFRKESYSETLQD--FSAVVDTLGREKEGAQTLLKEAKGAAYLSF-QPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNAEAVGLVSQVSALVTTGQLQ--LGAVGTDYVGMQEYIEALAWPKDIETGLRYGFPGK 1177
+ + S P+D G GS + DG L +SG DG +VI +V + PS S VEAR + KP L AA LP LV+ L + ++ G G L +V +L A GAR +A +EG A AL GA ++ ES++E L SAVVD +GRE+E ++EA G AY+S PA+L ++ EDG L + + Q + + R + + A +S+ AL+ +G+L A GMQ Y+E L WP+D ETG R+GFPG+
Sbjct: 3 ISVAASHVEPIDMRLHGGWGSVAAPPLASDAAQDDGETLCCAVSGAAADGSGDVIALVDSAE-PSPS---VEARRALCFSKPRSLSHVAAAQLPILVLTAAAAL------------HSVLIAGSTGRLPKLLVELLSARGARPCVAA--AEGGADALQRAGASAVFNYHAESFTEQLAGTGLSAVVDVVGREEEPGW--VREALGCAYVSAASPALLSLS-EDGAL-AAARGWQRRWGRRPHEGRRVWRADDRAAEALSEAMALLESGKLTPPAEASAASETGMQ-YLEFLRWPRDSETGRRFGFPGE 287
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A5J4Z2Z4_PORPP (Thioredoxin domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2Z4_PORPP) HSP 1 Score: 97.1 bits (240), Expect = 2.020e-17 Identity = 122/386 (31.61%), Postives = 177/386 (45.85%), Query Frame = 2
Query: 542 KAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSL-APFIVAVLKAWGARVALATTRSE-----GAARALGADWTVDFRKESYSETLQ--DFSAVVDTLGREKEGAQTLLKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNAEAVGLVSQVSALVTTGQLQ-LGAVGTDYVGMQEYIEALAWPKDIETGLRYGFPGKTNRAWGWLGGDSLDDGLP-------WEEDEEXXXXXXXXXXVEASVGGKGDGGGSAATAGGVAVLKNREDLRALVGQGGTMVFVSSRSCRACKYLAPFY----RKLARRQQRVMFGRVDASSYPELARVLGLNAVPSFVTFREG-----EVVTSTATSNKKKVEK 1624
+ A+L +L V+ L+ + G+ +V GG S A F V L GARV TT + A LGAD +D RK S+S+ L+ + AV+D L E+E A+ + +GA YLS P LK + EDGLL GS K + ++RT + + V V+A++ L L + T M +EA WP+D ++G RYGFP + WG DS D P + E EE XXXXXX E+ V D G + N E L ++FVS+ SC+ CK + P + R+L+ FG ++ E A+ L + VP F+ +R G +V T T S ++ +EK
Sbjct: 110 RLALLVYLAVDIFGRLAATVDELLAWRGRRVVVIGGANSPGACFAVHALSRLGARVVCVTTATRIGFDGSALLKLGADAVIDPRKVSWSDELKGSSYDAVLDALADEEENARIINALPRGARYLSIMPYALKGSTEDGLL-GS-------KARSSSEARTGKVNTEQQWSDV--VAAVLERVDLDALSRIPTKLSSMGAVLEAATWPRDTDSGERYGFPAPS--VWGDTS-DSEGDDAPGVVRSAVFYEPEEGEXXXXXXFS-ESIVSRVTDMTGLSTLLEDNEFADNDESL---------LLFVSATSCKRCKIIKPQFEIIARELSEAHPNAKFGLLEIGRDKEPAKFLNVRDVPQFLLYRRGARFDLQVSTQTFDSFQEGLEK 472
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A7S0ESB2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ESB2_9CRYP) HSP 1 Score: 84.3 bits (207), Expect = 3.210e-13 Identity = 97/400 (24.25%), Postives = 182/400 (45.50%), Query Frame = 2
Query: 488 VLVEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGF-GVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAARALGADWTVDFRKESYSETLQDFSAVVDTLGREKEGAQTLLKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNAEAVGLVSQVSALVTTGQLQLGAVGTDYVGMQEYIEALAWPKDIETGLRYGFPGKTNRAWGWLGGDSLDDGLPWEEDEEXXXXXXXXXXVEASVG---------GKGDGGGSA---ATAGGVAVLKNREDLRALVGQGGT----MVFVSSRSCRACKYLAPFYRKLARRQQRVMFGRVDASSYPELARVLGLNAVPSFVTFREG-EVVTSTATSNKKKVEKLVE 1633
+ +++ I KP +A++ P L L L + G S+ G+ +VTGG + + KA G+ V A+ ++ G + +GAD +D+++ S+ + L D VVD LG E + L G Y S ++ + +G L G ++ ++ + + + + + E + + + L+ ++ Y E++EA++WPKD++TGLR+GFPG++ W D+ G E E XXXXXXX S+ G + A + G V +++ E + L+ +V + C C+ + ++KL++++ +F V+ +A + + VPSFV FR G +V ++K++ + +E
Sbjct: 151 IEIDSTFAILKPSSFTNTQASLFPSLACLILQALWKCGIVNSSVLKGKRVVVTGGSSPVGSLAIQYFKALGSHVIAASDKA-GEEKRIGADEVIDYKRNSFYDELPDLFLVVDALGSSTE--EELALRRAGILYASIMNPLVAMVTREGALKGGLEVYKFSRG---EQTPCEWRLSEEGARSLREFAELMQGAGVKPKFDREGYTAA-EWLEAMSWPKDMDTGLRFGFPGQSL----WKDEDTAS-GASQETSEYEREXXXXXXXXXXSLRELYERVRQTGSEEISFEAFKRSQVGAVRQVESAEHMDELLVSSPADVPVLVEFHAPFCMTCRKMMTRFKKLSKKKNDAIFLSVNVKEQKTVAGMYQVTDVPSFVLFRAGTKVAQCKGAISEKELSRFLE 538
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A7C6ZW41_9CHLR (NAD(P)-dependent alcohol dehydrogenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6ZW41_9CHLR) HSP 1 Score: 71.6 bits (174), Expect = 1.140e-9 Identity = 62/216 (28.70%), Postives = 103/216 (47.69%), Query Frame = 2
Query: 206 YQRHDLQQVPPLAMDAAVEASGSGSVTVKIKRSTRNPVDTSQLSG--CGSTFYASGYDENGNKDGLVLMQTISGV------LDDGREVIGVVRPGKYPSGSSV---LVEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARV-ALATTRSEGAARALGADWTVDFRKESYSETLQDFSAV 817
Y ++ L V L D A G V +KI ++ N +D L+ + F + N+ G L + V G V G + P Y SG+ ++ A+ + KPP L + +AA LP + L L + G + AGQ ++ G G + F V + KA+GARV A+ +TR+ A+ALGAD +D+ KE+++++ + + +
Sbjct: 6 YTQYGLPDVLTL-QDVPKPAPKDGEVLIKIHAASVNALDWHLLTADIFLARFSEGLFKPKRNRLGADLAGRVEAVGSGVTQFQSGDAVYGDIEP--YGSGAFAEYAVLPAKALAPKPPSLTFAEAAALPIAGLTALQGLRDVG---KLHAGQRVLINGASGGVGTFAVQIAKAFGARVTAVCSTRNVAQAQALGADHVIDYTKENFTQSGEQYDLI 215
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A382BU39_9ZZZZ (PKS_ER domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382BU39_9ZZZZ) HSP 1 Score: 69.7 bits (169), Expect = 5.070e-9 Identity = 62/257 (24.12%), Postives = 123/257 (47.86%), Query Frame = 2
Query: 272 SGSVTVKIKRSTRNPVDTSQLSGCGSTFYASGYDENGNKDGLVLMQTISGVLD----------DGREVIGVVRPGKYPSGSSVLVEARHVI-DKPPGLDWGKAAMLPFLVVNCLWP--LSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAAR--ALGADWTVDFRKESYSETLQDFSAVVDTLGR---EKEGAQTL--LKEAKGAAYLSFQPAILKVAVEDGLLFGSGKILQYQKTVAK 982
S V VK+K ++ NP+D + G G T + + + +L +SGV++ +G+E+ G + S V + + +KP L +AA +P++ ++ +W + AG + V G G + F + +L WGA++ T RS + +LGAD T+D+ +E +S ++DF+ +D LG E+ ++T+ L+++ + Y++ L++ G+L G +L ++ + +
Sbjct: 14 STQVLVKVKATSVNPIDVMKREGYGRTIFEK---QRSFRFPWILGSDVSGVVERVGSKVTKFYEGQEIWGCTSSASQGTYSEYAVFFENELTNKPKNLSHLEAASMPYVALS-VWSALIRWAGLRPKDIQHKKIFVQAGSGGVGTFAIQLLHYWGAKI-YTTCRSNNSELLISLGADKTIDYTREDFSNIVKDFNIALDLLGDLGGEESVSKTVNALEKSSSSIYITLNHPTLRLMDTKGVLLGVPSVLLEREKIRR 265
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Match: A0A5J5BZN5_9ASTE (PKS_ER domain-containing protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5BZN5_9ASTE) HSP 1 Score: 69.3 bits (168), Expect = 6.190e-9 Identity = 68/254 (26.77%), Postives = 113/254 (44.49%), Query Frame = 2
Query: 227 QVPPLAMDAAVEASGSGSVTVKIKRSTRNPVDTSQLSGCGSTFYAS-----GYDENGNKDGLVLMQTISGV--LDDGREVIGVV--RPGKYPSGSSVL-----VEARHVIDKPPGLDWGKAAMLPFLVVNCLWPLSEAGFGVSMDAGQTFIVTGGHGSLAPFIVAVLKAWGARVALATTRSEGAA---RALGADWTVDFRKESYSETLQDFSAVVDTLGREKEGAQTLLKEAKGAAYLSF--QPAILKVAVEDG 931
Q L +A+V V + + + NPVD+ ++ G +S GYD G V+++ S V +G EV G + +P +YP L VE + + KP L + +AA LP + L +GF AG++ +V GG G + I+ + + +A T S G ++LGAD+ +D+ KES+ + + F V D +G+ + + + + A + PA L V DG
Sbjct: 26 QALKLVSNASVPQLKDDQVLIMVVAAALNPVDSKRMLGIFKATDSSLPTVPGYDVAG-----VVVKIGSQVKKFKEGDEVYGHINEKPLEYPKQFGSLAEYTAVEEKLLAPKPKNLSFAEAASLPLAIETAYEGLERSGF----SAGKSILVLGGAGGVGTLIIQLARHVFGASRVAATSSSGKLELLKSLGADFAIDYTKESFEDLPEKFDVVFDAVGQGDKAVKAVKEGGSVVAIIGAVTPPAFLFVVTSDG 270 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1171.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1171.1313.1 >prot_P-lacustris_contig1171.1313.1 ID=prot_P-lacustris_contig1171.1313.1|Name=mRNA_P-lacustris_contig1171.1313.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=539bp MKCAVVPFPLSRRRRRWSWLMKSRLLRWITSWNMVVLLICCSPMSTAFQSback to top mRNA from alignment at P-lacustris_contig1171:8934..15031- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1171.1313.1 ID=mRNA_P-lacustris_contig1171.1313.1|Name=mRNA_P-lacustris_contig1171.1313.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6098bp|location=Sequence derived from alignment at P-lacustris_contig1171:8934..15031- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1171:8934..15031- >mRNA_P-lacustris_contig1171.1313.1 ID=mRNA_P-lacustris_contig1171.1313.1|Name=mRNA_P-lacustris_contig1171.1313.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3234bp|location=Sequence derived from alignment at P-lacustris_contig1171:8934..15031- (Pleurocladia lacustris SAG_25_93)back to top |