mRNA_P-lacustris_contig117.1299.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig117.1299.1
Unique NamemRNA_P-lacustris_contig117.1299.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig117.1299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig117contigP-lacustris_contig117:108061..108445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815480.7543633-CDS-P-lacustris_contig117:108061..1081461622815480.7543633-CDS-P-lacustris_contig117:108061..108146Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 108062..108146 -
1693493563.5714796-CDS-P-lacustris_contig117:108061..1081461693493563.5714796-CDS-P-lacustris_contig117:108061..108146Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 108062..108146 -
1622815480.7675986-CDS-P-lacustris_contig117:108359..1084451622815480.7675986-CDS-P-lacustris_contig117:108359..108445Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 108360..108445 -
1693493563.583003-CDS-P-lacustris_contig117:108359..1084451693493563.583003-CDS-P-lacustris_contig117:108359..108445Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 108360..108445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig117.1299.1prot_P-lacustris_contig117.1299.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig117 108062..108445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig117.1299.1

>prot_P-lacustris_contig117.1299.1 ID=prot_P-lacustris_contig117.1299.1|Name=mRNA_P-lacustris_contig117.1299.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=57bp
TLVSPIGLKTLADHVKENHLRHYMTLQLRYYARMDRRRRHGQPSPLSEHN
ELMRNPP
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mRNA from alignment at P-lacustris_contig117:108061..108445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig117.1299.1 ID=mRNA_P-lacustris_contig117.1299.1|Name=mRNA_P-lacustris_contig117.1299.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=385bp|location=Sequence derived from alignment at P-lacustris_contig117:108061..108445- (Pleurocladia lacustris SAG_25_93)
ACGCTGGTGAGCCCCATCGGGTTGAAGACCCTAGCAGACCACGTGAAGGA
GAACCACCTGAGGCATTACATGACCTTACAGCTGAGGTGGGGAACGCTGA
AGAAGTATCTTAACCCCGTACCGTACGCTGCGAACTGATGATATTTCTTT
CAGTTGTTCATGACTTGGTGTTGCCCTCACGTGTCTATATGGTGTGTCAA
CGGCCCTTGGAAAATGTGCCACACATAGTAGCGCCATCTGATGTGTGTCT
CTGCGTGTGTTTTGCTTTTTTGTTGACGGCGCCTACGAAATCGATGCAGA
TATTACGCGCGCATGGATAGGCGGAGAAGGCATGGTCAGCCATCACCTTT
GTCGGAACACAACGAGCTGATGCGCAATCCTCCTC
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Coding sequence (CDS) from alignment at P-lacustris_contig117:108061..108445-

>mRNA_P-lacustris_contig117.1299.1 ID=mRNA_P-lacustris_contig117.1299.1|Name=mRNA_P-lacustris_contig117.1299.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=342bp|location=Sequence derived from alignment at P-lacustris_contig117:108061..108445- (Pleurocladia lacustris SAG_25_93)
ACGCTGGTGAGCCCCATCGGGTTGAAGACCCTAGCAGACCACGTGAAGGA
GAACCACCTGAGGCATTACATGACCTTACAGCTGAGACGCTGGTGAGCCC
CATCGGGTTGAAGACCCTAGCAGACCACGTGAAGGAGAACCACCTGAGGC
ATTACATGACCTTACAGCTGAGATATTACGCGCGCATGGATAGGCGGAGA
AGGCATGGTCAGCCATCACCTTTGTCGGAACACAACGAGCTGATGCGCAA
TCCTCCTATATTACGCGCGCATGGATAGGCGGAGAAGGCATGGTCAGCCA
TCACCTTTGTCGGAACACAACGAGCTGATGCGCAATCCTCCT
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