mRNA_P-lacustris_contig1168.1281.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1168.1281.1
Unique NamemRNA_P-lacustris_contig1168.1281.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1168.1281.1 vs. uniprot
Match: D8LMX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.410e-9
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = -1 
Query:  147 GAQGALWAVLQKLTVFNSRRKDLFILSYKGKKVVAPH 257
            G QGAL AV++KLTVFNSRRKDLFILSYKGKKV APH
Sbjct:  802 GVQGALRAVVKKLTVFNSRRKDLFILSYKGKKVTAPH 838
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BLAST of mRNA_P-lacustris_contig1168.1281.1 vs. uniprot
Match: A0A6H5K332_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K332_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.310e-9
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = -1 
Query:  147 GAQGALWAVLQKLTVFNSRRKDLFILSYKGKKVVAPH 257
            G QGAL AV++KLTVFNSRRKDLFILSYKGK+V APH
Sbjct:  857 GVQGALRAVVKKLTVFNSRRKDLFILSYKGKQVTAPH 893
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1168.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMX6_ECTSI2.410e-986.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K332_9PHAE8.310e-983.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1168contigP-lacustris_contig1168:36809..37275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.1560035-UTR-P-lacustris_contig1168:36808..369541622815479.1560035-UTR-P-lacustris_contig1168:36808..36954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1168 36809..36954 +
1693493562.7342727-UTR-P-lacustris_contig1168:36808..369541693493562.7342727-UTR-P-lacustris_contig1168:36808..36954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1168 36809..36954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.1717818-CDS-P-lacustris_contig1168:36954..372751622815479.1717818-CDS-P-lacustris_contig1168:36954..37275Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1168 36955..37275 +
1693493562.745594-CDS-P-lacustris_contig1168:36954..372751693493562.745594-CDS-P-lacustris_contig1168:36954..37275Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1168 36955..37275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1168.1281.1prot_P-lacustris_contig1168.1281.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1168 36955..37275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1168.1281.1

>prot_P-lacustris_contig1168.1281.1 ID=prot_P-lacustris_contig1168.1281.1|Name=mRNA_P-lacustris_contig1168.1281.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=107bp
MRCDYLFPLVRENKQIFPPAIKHGQFLQHRPQGSLSSLTVLPLPPPPPSP
TISAMSAAWRESLEDLRDFLSTATSKISVGISSSLRPPPPTESAAPTAPL
ISAVKCT
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mRNA from alignment at P-lacustris_contig1168:36809..37275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1168.1281.1 ID=mRNA_P-lacustris_contig1168.1281.1|Name=mRNA_P-lacustris_contig1168.1281.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=467bp|location=Sequence derived from alignment at P-lacustris_contig1168:36809..37275+ (Pleurocladia lacustris SAG_25_93)
GATCAAACAAACATTGTATAAGAACATATCCTCCTCGTCACCCTCTCGAC
ATGCAATTTGGAAAGTGATATGCTCAAAAGGCTATTTATGGCAAAGAAAA
CGTGGCAATTTGCTCTCTTTTCTGCCGCCGCCTTCACGACTAATCAATGC
GGTGCGACTACCTTTTTCCCCTTGTACGAGAGAATAAACAAATCTTTCCG
CCTGCTATTAAACACGGTCAATTTTTGCAACACCGCCCACAGGGCTCCTT
GAGCTCCTTGACCGTCTTGCCGCTGCCGCCGCCGCCGCCGTCACCAACAA
TTTCTGCTATGTCCGCAGCGTGGAGGGAAAGCTTGGAAGATCTGCGAGAT
TTTTTGTCAACGGCCACGAGTAAGATCTCCGTGGGCATCTCGTCTTCACT
CCGCCCCCCACCTCCGACGGAGTCGGCAGCACCTACCGCCCCCTTGATAT
CAGCGGTCAAATGCACC
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Coding sequence (CDS) from alignment at P-lacustris_contig1168:36809..37275+

>mRNA_P-lacustris_contig1168.1281.1 ID=mRNA_P-lacustris_contig1168.1281.1|Name=mRNA_P-lacustris_contig1168.1281.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=642bp|location=Sequence derived from alignment at P-lacustris_contig1168:36809..37275+ (Pleurocladia lacustris SAG_25_93)
ATGCGGTGCGACTACCTTTTTCCCCTTGTACGAGAGAATAAACAAATCTT
TCCGCCTGCTATTAAACACGGTCAATTTTTGCAACACCGCCCACAGGGCT
CCTTGAGCTCCTTGACCGTCTTGCCGCTGCCGCCGCCGCCGCCGTCACCA
ACAATTTCTGCTATGTCCGCAGCGTGGAGGGAAAGCTTGGAAGATCTGCG
AGATTTTTTGTCAACGGCCACGAGTAAGATCTCCGTGGGCATCTCGTCTT
CACTCCGCCCCCCACCTCCGACGGAGTCGGCAGCACCTACCGCCCCCTTG
ATATCAGCGGTCAAATGCACCATGCGGTGCGACTACCTTTTTCCCCTTGT
ACGAGAGAATAAACAAATCTTTCCGCCTGCTATTAAACACGGTCAATTTT
TGCAACACCGCCCACAGGGCTCCTTGAGCTCCTTGACCGTCTTGCCGCTG
CCGCCGCCGCCGCCGTCACCAACAATTTCTGCTATGTCCGCAGCGTGGAG
GGAAAGCTTGGAAGATCTGCGAGATTTTTTGTCAACGGCCACGAGTAAGA
TCTCCGTGGGCATCTCGTCTTCACTCCGCCCCCCACCTCCGACGGAGTCG
GCAGCACCTACCGCCCCCTTGATATCAGCGGTCAAATGCACC
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