mRNA_P-lacustris_contig1167.1277.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1167.1277.1
Unique NamemRNA_P-lacustris_contig1167.1277.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1167.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1167contigP-lacustris_contig1167:35780..40485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative LRR domain-encoding regions on the opposite strand of gene Ec-03_001790.1
Ec32 orthologEc-03_001790.5
Exons9
Model size631
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1167.1277.1prot_P-lacustris_contig1167.1277.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1167 35780..39298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.4488642-CDS-P-lacustris_contig1167:35779..358641622815478.4488642-CDS-P-lacustris_contig1167:35779..35864Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 35780..35864 +
1693493562.312757-CDS-P-lacustris_contig1167:35779..358641693493562.312757-CDS-P-lacustris_contig1167:35779..35864Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 35780..35864 +
1622815478.463681-CDS-P-lacustris_contig1167:37017..370891622815478.463681-CDS-P-lacustris_contig1167:37017..37089Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 37018..37089 +
1693493562.3252373-CDS-P-lacustris_contig1167:37017..370891693493562.3252373-CDS-P-lacustris_contig1167:37017..37089Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 37018..37089 +
1622815478.4750664-CDS-P-lacustris_contig1167:37300..373721622815478.4750664-CDS-P-lacustris_contig1167:37300..37372Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 37301..37372 +
1693493562.3363824-CDS-P-lacustris_contig1167:37300..373721693493562.3363824-CDS-P-lacustris_contig1167:37300..37372Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 37301..37372 +
1622815478.4896855-CDS-P-lacustris_contig1167:38033..380961622815478.4896855-CDS-P-lacustris_contig1167:38033..38096Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 38034..38096 +
1693493562.351308-CDS-P-lacustris_contig1167:38033..380961693493562.351308-CDS-P-lacustris_contig1167:38033..38096Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 38034..38096 +
1622815478.506016-CDS-P-lacustris_contig1167:38313..383851622815478.506016-CDS-P-lacustris_contig1167:38313..38385Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 38314..38385 +
1693493562.3659642-CDS-P-lacustris_contig1167:38313..383851693493562.3659642-CDS-P-lacustris_contig1167:38313..38385Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 38314..38385 +
1622815478.5173893-CDS-P-lacustris_contig1167:39248..392981622815478.5173893-CDS-P-lacustris_contig1167:39248..39298Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 39249..39298 +
1693493562.3752086-CDS-P-lacustris_contig1167:39248..392981693493562.3752086-CDS-P-lacustris_contig1167:39248..39298Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1167 39249..39298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.5279753-UTR-P-lacustris_contig1167:39298..393201622815478.5279753-UTR-P-lacustris_contig1167:39298..39320Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 39299..39320 +
1693493562.3857603-UTR-P-lacustris_contig1167:39298..393201693493562.3857603-UTR-P-lacustris_contig1167:39298..39320Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 39299..39320 +
1622815478.5387897-UTR-P-lacustris_contig1167:39452..395241622815478.5387897-UTR-P-lacustris_contig1167:39452..39524Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 39453..39524 +
1693493562.402748-UTR-P-lacustris_contig1167:39452..395241693493562.402748-UTR-P-lacustris_contig1167:39452..39524Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 39453..39524 +
1622815478.5521014-UTR-P-lacustris_contig1167:40175..402471622815478.5521014-UTR-P-lacustris_contig1167:40175..40247Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 40176..40247 +
1693493562.413315-UTR-P-lacustris_contig1167:40175..402471693493562.413315-UTR-P-lacustris_contig1167:40175..40247Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 40176..40247 +
1622815478.5681858-UTR-P-lacustris_contig1167:40435..404851622815478.5681858-UTR-P-lacustris_contig1167:40435..40485Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 40436..40485 +
1693493562.4271421-UTR-P-lacustris_contig1167:40435..404851693493562.4271421-UTR-P-lacustris_contig1167:40435..40485Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1167 40436..40485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1167.1277.1

>prot_P-lacustris_contig1167.1277.1 ID=prot_P-lacustris_contig1167.1277.1|Name=mRNA_P-lacustris_contig1167.1277.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=138bp
KSNAGAIPAQLGALNQLTDLDLSNNQLSGPIPSELGKLGALQELILWGNK
LSGHIPPQLGDLGALEFLYLGYNKLDGPLPPELGDLRELWLHGNQLTGPI
PSELGKLGALTHLKLQWNKLSGPIPSELGHLSALKKL*
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mRNA from alignment at P-lacustris_contig1167:35780..40485+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1167.1277.1 ID=mRNA_P-lacustris_contig1167.1277.1|Name=mRNA_P-lacustris_contig1167.1277.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4706bp|location=Sequence derived from alignment at P-lacustris_contig1167:35780..40485+ (Pleurocladia lacustris SAG_25_93)
AAATCCAATGCAGGTGCGATCCCCGCGCAGCTTGGCGCTCTCAACCAGCT
AACGGACCTCGACCTGTCCAACAACCAGCTCAGCGGTGAGAGACGGTGTT
TAAAATTGAATATTTTTTATTAATTTCTGGAACATATGCATGTGTCCCAC
CCGCGCGTAGGCGAGTACGAAATTTCACAAGTCGAAACACGCGCAACATC
TTTCGCTACAAGTAGGTTTCTCGAAAACGGGGAATTTTTTTCTTCATCCC
GCTGATTTAGTTTTTGCTTCTTCGCTTGCAGGCCCCATCCCTGTGGCTCG
CCAGCAACCAGCTCATAGGTAACTTTCCATCTTGACATTTAGTTTCAAAT
TGTGTTTAGCCTTCATTTGGACAAAAGATGTCCCGCGAGTTCCGAATTGT
GAAATTTCGTACTCGCCTACGTATTTTTTTCTGTCGAACGTGTTCCGCCA
ACGCATACGATGTCCCGCGAGTTcCGAATTGTGAAATTTTGTACTCGCCT
ACGCGTGGGCGAGTACGAAATTTCACAATTTCGGAACTCGCGGAACATCT
TTTGCGTTGGCGGGACACGTTCGACAGAAATAAAAAAATAAAATAAAGAA
GCAGACGGGGTTGAGAATGGTACCTCACCGCTCAGTTTGTTGCCCTTAAG
AATTAAGTACTGAAGGGCCCCAAGCTTCCCTAGCTCCGAGGGGATAGGAC
CTGAAAACAGGAGAGTAAAAACGAAGTACGTGGTCATGACAAAAAGAAAC
AAAATGTTTCTCCGGCTTCTCGAACATCGGTCCTGCCAACGCGTGGGTGA
CTAAGTATACAAAAGATGTCCCGCGAGTTCCGAATTGTGAAATTTTGTAC
TCGCCTACGCGTGGGCGAGTACGAAATTTCACAATTTCGGAACTCGCGGA
ACATCTTTTGCGTTGGCGGGACACGTTCGACAGAAATAAAAAAATAAAAT
AAAGAAGCAGACGGTGTTGAGAATGGTACCTCACCGCTCAGTTTGTTGCC
CTTAAGAATTAAGTACTGAAGGGCCCCAAGCTTCCCTAGCTCCGAGGGGA
TAGGACCTGAAAACAGGAGAGTAAAAACGAAGTACGTGGTCATGACAAAA
AGAAACAAAATGTTTCTCCGGCTTCTCGAACATTGGTCCTGCCAACGCGT
GGGTGACTAAGTATTCTAGAACAACGATTTCGATCTTTTTTTCTCGAAGG
CTGACTCAAAATTTAAATTTTTACTCTCCTGTTTTCAGGTCCTATCCCCT
CGGAGCTAGGGAAGCTTGGGGCCCTTCAGGAATTGATTCTTTGGGGCAAC
AAACTGAGCGGTGAGGTACCATTCTCAACACCGTCTGCTTCTTTATTTTA
TTTTTTTATTTCTGTCGAACGTGTCCCGCCAACGCAAAAGATGTTCCGCG
AGTTCCGAAATTGTGAAATTTCGTATTCACCCACGCGTACGCGGGACCGA
TGTTCTAGAACCCgGGGGATTTTTTTGCTTTGCCCCGCTAAATTGCCTTG
CTTCGGCTCGCACATCTACAGGACACATCCCGCCGCAGCTAGGAGACCTT
GGTGCCCTGGAGTTCCTCTACCTCGGCTACAACAAGTTAGATGGTGAGTT
GAACAGATCAAATAGCTTTTTTTATTTTGGAGTTCTGAACATGCGTGAAT
CCCGCGTACGCATTGGCGGGGTTCATCCATAACAGTTTGAAAATCATCTA
AAACTGCCAAAGATAAAAAGAAGTCACCTGTGAGCAGGTTTTGGGAGAGC
TCCAGGGCCTGCAGCTCGCCGAGAGCTCCCAGCTCCGGCGGGATGGGGCC
TGCCAGCGGAGGAGTGAACACAGAGTTAGCGGGGAATTAAAAAAAACAAT
TCCCCGCTTTTTCTAGAACACCTGCCTACTCACGCACTGCGTTGGCAGGA
CACATCTTCAAATACGGCAACTTGGCAAAAAAAAAGAAGCATTACGTGTT
ATGGGCCCTAGTGACTCACCGCTCAGCTGGTTCTTGTAGAGGCCTAGCAC
TTGCAGCGCCACGAGCTTTCCCAGCTTCGGCGGGATAGTGCCTGCAAGAG
GAAGGGGATAAGAAGATAGCGGGGGAAAACAAAAATTAATCCCCGGCATC
TAGTCTAGAAAAACGGTCCCGCCAGCGCGTAGGCGAGTACGAAATTTCAC
AATTCGGAACTCGCGGAACATCTTTTGCTACGAGAAGGTGTTCTCGAAAA
CGAAGATTTTTTTTTTTCTTCCCGCTGATTTAGTCTTTGCTTCTTGGCTT
GCAGGCCCCCTCCCGCCGGAGCTGGGAGATCTCCGAGAGCTGTGGCTCCA
CGGCAACCAGCTCACAGGTAACTTTGCATCTTGACATTAGTTTCAAATTA
TGTTCAGCCTTGATTTGGATGAACCTCGCCGATAGCACACAATTCAACAT
TTTTTTGCCAAGTTGTCGAATTTGAAGATGTGTCCTGCCAACGCGTTGGC
AGGACCGATGTTCGAGAAGCCGGAGAAGCATTTTGTTCATTTCTGTCATG
ACCACGTACTTCGTTTTTACTCTCCTGTTTTCAGGTCCTATTCCCTCGGA
GCTAGGGAAGCTTGGGGCCCTAACACATCTGAAGCTTCAGTGGAACAAGT
TGAGCGGTGAGTCAAAAGCATGTTCAGAACTCGAAAGAAAATCGCTTTTC
GATCTGTTCAACTCACCATCTAACTCGTTGTTGCCGAGGTTGAGGAACTC
GAGGGCGCCAAGCTGTCCGAGCTGCGGCGGAATGTTGCCTGCAGATGAAC
GAGTCAAAGCAGGGCAGTTTAGCAGGGTAGAGCAAAAGATATCCCGCGAG
TTCTGAAATTTCGTACTCACCTACGTAGTTGGCGGGACAGGATCTATGGA
GATCGATATACTAAACCAAACCTACCCACTCACGCCGAATCGGTCGGGAA
AGAGCTATCAAATCATGCGTTGACTCACCGCTTAGCTGGTTGCGGTCAAG
GCGGAGCCACTGTAGTGCTGACAGGTGCCCCAGCTCCGATGGGATGCGCC
CTGCAAGAGGAGGTGGAACGGAGTACATGAGCGGACAAAAAAATGTAACC
CCCACTTTCTAGAACATCGGTCCCGCCTACTATTTTCAGAGGACGCCAAC
TAAGTTGGCGTCCTCTTGAAAATAGTAGGCGGGACCGATGTTCTTTCTCG
AATGCGGGATGTTATATTTTTTGTCCGCTCAGGTACTCCGTTCCACCCCT
CCTCTTGCAGGGCGCATCCCATCGGAGCTGGGGCACCTGTCAGCGCGACA
GTGGCTCCGCCTTGACCGCAACCAGCTAAGCGGTGAGTCAACGCATGATT
TGATAGCTCTTTCCCGACCGATTCGGCGTGAGTGGGTAGGTTTGGTTTAG
TATATCGATCTCCATAGATCCTGTCCCGCCAACTAATTGGCGGGACCAAT
ATTCTAGAAAGCGAGGGGTTGTTTTCTTTTGTCCCGCTGAGCTTCTTCGT
TCCGTCCGTCCGCTGGCAGGCCCCATCCCATCGGAGCTTGGGCACCTTTC
AGCACTGAAGAAACTCTAACTTCACGACAACCAGCTGAGCGGTGAGTCAA
CATGTGATTTGATGACTGTTCCACGACCGATTAGTTGGCGTCCACTCACG
AGTACAATAGGTGTGCTCAAAAGCCGGGGCATTTACATTTGCTTTGTCCC
GCTACTCCCTTTTCCGATGGCAGGTTCCATTCCGCCGGAGCTTGGAAAGC
TCGGCGCACTGCAGCGCCTCATCCTCTGGAGCAACAAGCTAACCGGTGAG
AGTTCTAGGGGAATATCGGGAAAAAAACAAGAAAAAAACTAACCCGCCTC
TCTATTTTCAAGAGGACGCCAACTAGTTGGTGTTCATGCACGTTTCTACA
GAAGGCGAAAAAAGAAATAATATTTTGCACTTTCTCACCAGAAAGCTGGT
TGCTGTCAAGCCCAAGCTCTCGCAATGCGCTCAGGGCTCCGAGTTCCTTG
GGTATGGGCCCTGCACATGAGAGCCGCACAGAAAAAAACAAAACATCGAC
ATGTGTTTTTGTTATCCAGCATCTAGAACATTGGTCCCGCCAACTAGTTG
GCGTCCACGAAACTTCTGTACAGAACGCGCGGGGATTTTTGTTTTATCTC
CCCTCCGAATCTTGCAATTATCATGTTGCGCTCCAAACTCACCGCTTAGC
TTGTTGCTTCTAAGGTTGAGGACTTGCAGCGCTGAGAGGTTCCCCAGCTC
CGGCGGCATGGGGCCTGTCAAGTGGGAAATAAAAAACATTAACCCGCCTG
TCTAATTTCAAGACAACTGATCTCCGTAGATCTTGTCCCGCCTACTAGTG
GGTGGGACACGATCTAGGGAGATCGAATATCTCGAATAGAGAGAGCCGGG
TGATTAAATTATTTTTCCCCCGCAAACGTATATTTCTTGTTTGCAGGTGC
GATCCCGGCGCAGCTCGGCGCTCTCAACAAGCTCGAGTGGCTCGACCTGT
CCAACAACCAGCTGAGCGGTGAGAGACTGATGGAATTTGGATACTTTATT
AAAATTTCTCATAACGTATTCATGTGCCCCGCCGGCGCCGGGGAAATGGA
CGCCGACTAGTGGGTGGGACACGATCTACGGAGATCGAATATCTCGAATA
GAGAGAGGGGTGATTAAATTCTTTTTCCCCCGCAAACGTATATTTCTTGT
TTGCAGGTGCGATCCCGGCGCAGCTCGGCGCTCTCAACAAGCTCGAGGGG
CTCGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1167:35780..40485+

>mRNA_P-lacustris_contig1167.1277.1 ID=mRNA_P-lacustris_contig1167.1277.1|Name=mRNA_P-lacustris_contig1167.1277.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=828bp|location=Sequence derived from alignment at P-lacustris_contig1167:35780..40485+ (Pleurocladia lacustris SAG_25_93)
AAATCCAATGCAGGTGCGATCCCCGCGCAGCTTGGCGCTCTCAACCAGCT
AACGGACCTCGACCTGTCCAACAACCAGCTCAGCGAAATCCAATGCAGGT
GCGATCCCCGCGCAGCTTGGCGCTCTCAACCAGCTAACGGACCTCGACCT
GTCCAACAACCAGCTCAGCGGTCCTATCCCCTCGGAGCTAGGGAAGCTTG
GGGCCCTTCAGGAATTGATTCTTTGGGGCAACAAACTGAGCGGTCCTATC
CCCTCGGAGCTAGGGAAGCTTGGGGCCCTTCAGGAATTGATTCTTTGGGG
CAACAAACTGAGCGGACACATCCCGCCGCAGCTAGGAGACCTTGGTGCCC
TGGAGTTCCTCTACCTCGGCTACAACAAGTTAGATGGACACATCCCGCCG
CAGCTAGGAGACCTTGGTGCCCTGGAGTTCCTCTACCTCGGCTACAACAA
GTTAGATGGCCCCCTCCCGCCGGAGCTGGGAGATCTCCGAGAGCTGTGGC
TCCACGGCAACCAGCTCACAGGCCCCCTCCCGCCGGAGCTGGGAGATCTC
CGAGAGCTGTGGCTCCACGGCAACCAGCTCACAGGTCCTATTCCCTCGGA
GCTAGGGAAGCTTGGGGCCCTAACACATCTGAAGCTTCAGTGGAACAAGT
TGAGCGGTCCTATTCCCTCGGAGCTAGGGAAGCTTGGGGCCCTAACACAT
CTGAAGCTTCAGTGGAACAAGTTGAGCGGCCCCATCCCATCGGAGCTTGG
GCACCTTTCAGCACTGAAGAAACTCTAAGCCCCATCCCATCGGAGCTTGG
GCACCTTTCAGCACTGAAGAAACTCTAA
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