mRNA_P-lacustris_contig1166.1269.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1166.1269.1
Unique NamemRNA_P-lacustris_contig1166.1269.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1166.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1166contigP-lacustris_contig1166:17312..17940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size629
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.8328156-CDS-P-lacustris_contig1166:17311..177341622815477.8328156-CDS-P-lacustris_contig1166:17311..17734Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1166 17312..17734 +
1693493561.9739702-CDS-P-lacustris_contig1166:17311..177341693493561.9739702-CDS-P-lacustris_contig1166:17311..17734Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1166 17312..17734 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.8457222-UTR-P-lacustris_contig1166:17734..179401622815477.8457222-UTR-P-lacustris_contig1166:17734..17940Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 17735..17940 +
1693493561.986505-UTR-P-lacustris_contig1166:17734..179401693493561.986505-UTR-P-lacustris_contig1166:17734..17940Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 17735..17940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1166.1269.1prot_P-lacustris_contig1166.1269.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1166 17312..17734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1166.1269.1

>prot_P-lacustris_contig1166.1269.1 ID=prot_P-lacustris_contig1166.1269.1|Name=mRNA_P-lacustris_contig1166.1269.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=141bp
RHPADEQRKEQPPATRFVGLAAASWSLRAFGHPCSVGTHTSVAVLPRLLS
SWCVEWSCVHSSFQHVPLWGERRKKRERDKEKKRERFPAACSAGKQPTKK
GKEPRKKSVNGPPNGPNAQRPAKTNLQLYLKIFIETAEKA*
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mRNA from alignment at P-lacustris_contig1166:17312..17940+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1166.1269.1 ID=mRNA_P-lacustris_contig1166.1269.1|Name=mRNA_P-lacustris_contig1166.1269.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=629bp|location=Sequence derived from alignment at P-lacustris_contig1166:17312..17940+ (Pleurocladia lacustris SAG_25_93)
CGGCACCCAGCGGATGAACAAAGAAAGGAGCAGCCCCCAGCAACTCGCTT
CGTGGGTTTGGCAGCTGCCTCGTGGTCTCTCCGTGCTTTCGGCCACCCAT
GTTCTGTGGGTACACATACATCTGTGGCGGTGCTTCCCCGCTTGCTTTCT
TCGTGGTGTGTTGAGTGGTCTTGTGTGCACAGCAGTTTCCAGCACGTTCC
TTTGTGGGGAGAGAGAAGGAAAAAAAGGGAAAGAGACAAGGAAAAAAAGC
GTGAACGGTTCCCAGCCGCTTGCTCCGCGGGGAAACAGCCGACGAAAAAA
GGGAAAGAGCCGAGGAAAAAAAGCGTGAACGGCCCCCCGAACGGCCCGAA
TGCGCAACGACCGGCAAAGACAAATCTTCAACTGTATTTAAAGATATTCA
TCGAAACAGCCGAAAAGGCGTGAAAGGCGCTCGAACAGGCCGCCCCTGCT
AACGACCAGCAAAGACAAATTTATAGATGTATTTATATATATTCAAACAG
CAAACACAAAGTCGCCGTTAGTGCACAACACCGAGTCAGAAGTGAAACAC
ACCCTCCTCGTAAAGGCATACCCGCCTGGGAGAGAGTCAGCCCTCGCATA
GCTCCCACGGTGTTGGGGTATGCTGATGT
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Coding sequence (CDS) from alignment at P-lacustris_contig1166:17312..17940+

>mRNA_P-lacustris_contig1166.1269.1 ID=mRNA_P-lacustris_contig1166.1269.1|Name=mRNA_P-lacustris_contig1166.1269.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=846bp|location=Sequence derived from alignment at P-lacustris_contig1166:17312..17940+ (Pleurocladia lacustris SAG_25_93)
CGGCACCCAGCGGATGAACAAAGAAAGGAGCAGCCCCCAGCAACTCGCTT
CGTGGGTTTGGCAGCTGCCTCGTGGTCTCTCCGTGCTTTCGGCCACCCAT
GTTCTGTGGGTACACATACATCTGTGGCGGTGCTTCCCCGCTTGCTTTCT
TCGTGGTGTGTTGAGTGGTCTTGTGTGCACAGCAGTTTCCAGCACGTTCC
TTTGTGGGGAGAGAGAAGGAAAAAAAGGGAAAGAGACAAGGAAAAAAAGC
GTGAACGGTTCCCAGCCGCTTGCTCCGCGGGGAAACAGCCGACGAAAAAA
GGGAAAGAGCCGAGGAAAAAAAGCGTGAACGGCCCCCCGAACGGCCCGAA
TGCGCAACGACCGGCAAAGACAAATCTTCAACTGTATTTAAAGATATTCA
TCGAAACAGCCGAAAAGGCGTGACGGCACCCAGCGGATGAACAAAGAAAG
GAGCAGCCCCCAGCAACTCGCTTCGTGGGTTTGGCAGCTGCCTCGTGGTC
TCTCCGTGCTTTCGGCCACCCATGTTCTGTGGGTACACATACATCTGTGG
CGGTGCTTCCCCGCTTGCTTTCTTCGTGGTGTGTTGAGTGGTCTTGTGTG
CACAGCAGTTTCCAGCACGTTCCTTTGTGGGGAGAGAGAAGGAAAAAAAG
GGAAAGAGACAAGGAAAAAAAGCGTGAACGGTTCCCAGCCGCTTGCTCCG
CGGGGAAACAGCCGACGAAAAAAGGGAAAGAGCCGAGGAAAAAAAGCGTG
AACGGCCCCCCGAACGGCCCGAATGCGCAACGACCGGCAAAGACAAATCT
TCAACTGTATTTAAAGATATTCATCGAAACAGCCGAAAAGGCGTGA
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