mRNA_P-lacustris_contig1166.1267.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1166.1267.1
Unique NamemRNA_P-lacustris_contig1166.1267.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1166.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1166contigP-lacustris_contig1166:10624..11172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1166.1267.1prot_P-lacustris_contig1166.1267.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1166 10823..11140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.685246-UTR-P-lacustris_contig1166:10623..108221622815477.685246-UTR-P-lacustris_contig1166:10623..10822Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 10624..10822 +
1693493561.899042-UTR-P-lacustris_contig1166:10623..108221693493561.899042-UTR-P-lacustris_contig1166:10623..10822Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 10624..10822 +
1622815477.7212343-UTR-P-lacustris_contig1166:11140..111721622815477.7212343-UTR-P-lacustris_contig1166:11140..11172Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 11141..11172 +
1693493561.9227576-UTR-P-lacustris_contig1166:11140..111721693493561.9227576-UTR-P-lacustris_contig1166:11140..11172Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1166 11141..11172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.70402-CDS-P-lacustris_contig1166:10822..111401622815477.70402-CDS-P-lacustris_contig1166:10822..11140Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1166 10823..11140 +
1693493561.9098287-CDS-P-lacustris_contig1166:10822..111401693493561.9098287-CDS-P-lacustris_contig1166:10822..11140Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1166 10823..11140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1166.1267.1

>prot_P-lacustris_contig1166.1267.1 ID=prot_P-lacustris_contig1166.1267.1|Name=mRNA_P-lacustris_contig1166.1267.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=106bp
MSFQLKSSSRRKRRLMQKKSRPFSTGLSGLLYVFRRPAEEQNTAVFFLER
SAPSNLLRGFGSCLVVSSCFPPPYMFYGYTSPVLITSVAVLPRLLSFFFV
VWCVV*
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mRNA from alignment at P-lacustris_contig1166:10624..11172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1166.1267.1 ID=mRNA_P-lacustris_contig1166.1267.1|Name=mRNA_P-lacustris_contig1166.1267.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=549bp|location=Sequence derived from alignment at P-lacustris_contig1166:10624..11172+ (Pleurocladia lacustris SAG_25_93)
GTAGTAGAGTAGAGGAGACAGCTTATATTGTGCAAAAAATGAGAGCGGTC
CACTCTCGGGTGGACTGCTGTCTGGTTTGTTCTATTTTTTTTGGCAGCCA
GCGGAAGAACAAAAAACCCGGCAGTTTTTTCTCTTTTTTAGCATAAGCCG
TCCTACTACTACTTACTGCTGTTAAGCTTCGATTTACTTCACGACATACA
TGTCTTTCCAGCTGAAAAGCAGTAGTAGGAGGAAGAGGCGGCTTATGCAA
AAAAAGAGCCGTCCATTCTCGACTGGTCTGTCTGGTTTGTTGTATGTTTT
TCGGCGGCCAGCGGAAGAACAAAACACGGCAGTTTTTTTCCTGGAAAGAA
GCGCTCCCAGCAACTTGCTTCGTGGTTTTGGCAGCTGCCTCGTGGTCTCC
TCGTGCTTTCCGCCACCCTATATGTTCTATGGGTACACATCACCTGTTTT
GATCACATCTGTGGCGGTGCTCCCCCGCTTGCTTTCTTTTTTCTTTGTGG
TGTGGTGTGTTGTGTAGTGTTGTTGTGTTTCCAGCAGCTTGCCTTGTGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1166:10624..11172+

>mRNA_P-lacustris_contig1166.1267.1 ID=mRNA_P-lacustris_contig1166.1267.1|Name=mRNA_P-lacustris_contig1166.1267.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=636bp|location=Sequence derived from alignment at P-lacustris_contig1166:10624..11172+ (Pleurocladia lacustris SAG_25_93)
ATGTCTTTCCAGCTGAAAAGCAGTAGTAGGAGGAAGAGGCGGCTTATGCA
AAAAAAGAGCCGTCCATTCTCGACTGGTCTGTCTGGTTTGTTGTATGTTT
TTCGGCGGCCAGCGGAAGAACAAAACACGGCAGTTTTTTTCCTGGAAAGA
AGCGCTCCCAGCAACTTGCTTCGTGGTTTTGGCAGCTGCCTCGTGGTCTC
CTCGTGCTTTCCGCCACCCTATATGTTCTATGGGTACACATCACCTGTTT
TGATCACATCTGTGGCGGTGCTCCCCCGCTTGCTTTCTTTTTTCTTTGTG
GTGTGGTGTGTTGTGTAGATGTCTTTCCAGCTGAAAAGCAGTAGTAGGAG
GAAGAGGCGGCTTATGCAAAAAAAGAGCCGTCCATTCTCGACTGGTCTGT
CTGGTTTGTTGTATGTTTTTCGGCGGCCAGCGGAAGAACAAAACACGGCA
GTTTTTTTCCTGGAAAGAAGCGCTCCCAGCAACTTGCTTCGTGGTTTTGG
CAGCTGCCTCGTGGTCTCCTCGTGCTTTCCGCCACCCTATATGTTCTATG
GGTACACATCACCTGTTTTGATCACATCTGTGGCGGTGCTCCCCCGCTTG
CTTTCTTTTTTCTTTGTGGTGTGGTGTGTTGTGTAG
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