mRNA_P-lacustris_contig1163.1254.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1163.1254.1
Unique NamemRNA_P-lacustris_contig1163.1254.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1163.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1163contigP-lacustris_contig1163:13551..14008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size458
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1163.1254.1prot_P-lacustris_contig1163.1254.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1163 13630..13932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.4526017-UTR-P-lacustris_contig1163:13550..136291622815475.4526017-UTR-P-lacustris_contig1163:13550..13629Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1163 13551..13629 +
1693493560.5575612-UTR-P-lacustris_contig1163:13550..136291693493560.5575612-UTR-P-lacustris_contig1163:13550..13629Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1163 13551..13629 +
1622815475.4829051-UTR-P-lacustris_contig1163:13932..140081622815475.4829051-UTR-P-lacustris_contig1163:13932..14008Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1163 13933..14008 +
1693493560.5781515-UTR-P-lacustris_contig1163:13932..140081693493560.5781515-UTR-P-lacustris_contig1163:13932..14008Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1163 13933..14008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.467166-CDS-P-lacustris_contig1163:13629..139321622815475.467166-CDS-P-lacustris_contig1163:13629..13932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1163 13630..13932 +
1693493560.5698385-CDS-P-lacustris_contig1163:13629..139321693493560.5698385-CDS-P-lacustris_contig1163:13629..13932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1163 13630..13932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1163.1254.1

>prot_P-lacustris_contig1163.1254.1 ID=prot_P-lacustris_contig1163.1254.1|Name=mRNA_P-lacustris_contig1163.1254.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=101bp
MRGQAGYPISALVACCFVPAYDTPPCSASSLARGGVVPVLVFLCGFLGNV
LAFVSTGSPSVFLKALSLLSLKAPPMLSLTVFLMGSLFFIFVWWKVSFEM
*
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mRNA from alignment at P-lacustris_contig1163:13551..14008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1163.1254.1 ID=mRNA_P-lacustris_contig1163.1254.1|Name=mRNA_P-lacustris_contig1163.1254.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=458bp|location=Sequence derived from alignment at P-lacustris_contig1163:13551..14008+ (Pleurocladia lacustris SAG_25_93)
CTGTGACGGCACGTGCATCTTTTTCGCAACCCTCAGTCCAAAGCTTCACG
CGTGTGGTAGCCATCCTGGCTTTCTTCATATGAGAGGTCAAGCGGGTTAC
CCCATCTCCGCTTTGGTCGCGTGTTGCTTTGTGCCTGCGTACGACACTCC
GCCATGCTCGGCATCCTCCCTCGCTCGTGGTGGAGTGGTTCCCGTTCTCG
TGTTTCTCTGTGGTTTCCTAGGCAACGTGCTTGCTTTCGTCAGCACAGGC
TCCCCCTCTGTATTTCTCAAGGCTCTATCTCTGCTATCACTCAAGGCTCC
CCCCATGCTATCACTCACGGTGTTTTTGATGGGGTCGTTATTTTTTATTT
TTGTGTGGTGGAAAGTGAGTTTTGAGATGTGATCGGTCATACTTCGAGGT
GGTTGTCCTGGATATGTCGACCAAAGCATTCGAGACCCGTCGGACCAGCA
CAAGCCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1163:13551..14008+

>mRNA_P-lacustris_contig1163.1254.1 ID=mRNA_P-lacustris_contig1163.1254.1|Name=mRNA_P-lacustris_contig1163.1254.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=606bp|location=Sequence derived from alignment at P-lacustris_contig1163:13551..14008+ (Pleurocladia lacustris SAG_25_93)
ATGAGAGGTCAAGCGGGTTACCCCATCTCCGCTTTGGTCGCGTGTTGCTT
TGTGCCTGCGTACGACACTCCGCCATGCTCGGCATCCTCCCTCGCTCGTG
GTGGAGTGGTTCCCGTTCTCGTGTTTCTCTGTGGTTTCCTAGGCAACGTG
CTTGCTTTCGTCAGCACAGGCTCCCCCTCTGTATTTCTCAAGGCTCTATC
TCTGCTATCACTCAAGGCTCCCCCCATGCTATCACTCACGGTGTTTTTGA
TGGGGTCGTTATTTTTTATTTTTGTGTGGTGGAAAGTGAGTTTTGAGATG
TGAATGAGAGGTCAAGCGGGTTACCCCATCTCCGCTTTGGTCGCGTGTTG
CTTTGTGCCTGCGTACGACACTCCGCCATGCTCGGCATCCTCCCTCGCTC
GTGGTGGAGTGGTTCCCGTTCTCGTGTTTCTCTGTGGTTTCCTAGGCAAC
GTGCTTGCTTTCGTCAGCACAGGCTCCCCCTCTGTATTTCTCAAGGCTCT
ATCTCTGCTATCACTCAAGGCTCCCCCCATGCTATCACTCACGGTGTTTT
TGATGGGGTCGTTATTTTTTATTTTTGTGTGGTGGAAAGTGAGTTTTGAG
ATGTGA
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