mRNA_P-lacustris_contig1155.1196.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1155.1196.1
Unique NamemRNA_P-lacustris_contig1155.1196.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1155.1196.1 vs. uniprot
Match: D8LRN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-18
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:  135 NGATSALREFIGTETSSGRLQVIVSGPGGFMFHVENLLADLHIPPEVVVTL 287
            N  T  LRE +G ETSSGRLQV+VSGP GF+FHVE LLADLHIPPE VVTL
Sbjct:   64 NRMTDTLRELVGIETSSGRLQVVVSGPAGFVFHVEGLLADLHIPPEAVVTL 114
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BLAST of mRNA_P-lacustris_contig1155.1196.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.440e-8
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 3 
Query:  153 LREFIGTETSSGRLQVIVSGPGGFMFHVENLLADLHIPPEVVVTL 287
            L +  GT+T  G+LQV+VSGP GF+F+VE++LA++ +P E +V L
Sbjct:   73 LDDLAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFL 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1155.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRN4_ECTSI3.400e-1876.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9F0_9PHAE6.440e-851.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1155contigP-lacustris_contig1155:65759..66342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000450.1
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.6381779-CDS-P-lacustris_contig1155:65760..658511622815462.6381779-CDS-P-lacustris_contig1155:65760..65851Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1155 65761..65851 -
1693493553.6315715-CDS-P-lacustris_contig1155:65760..658511693493553.6315715-CDS-P-lacustris_contig1155:65760..65851Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1155 65761..65851 -
1622815462.6524737-CDS-P-lacustris_contig1155:66145..663421622815462.6524737-CDS-P-lacustris_contig1155:66145..66342Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1155 66146..66342 -
1693493553.6443667-CDS-P-lacustris_contig1155:66145..663421693493553.6443667-CDS-P-lacustris_contig1155:66145..66342Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1155 66146..66342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1155.1196.1prot_P-lacustris_contig1155.1196.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1155 65761..66342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1155.1196.1

>prot_P-lacustris_contig1155.1196.1 ID=prot_P-lacustris_contig1155.1196.1|Name=mRNA_P-lacustris_contig1155.1196.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=96bp
SGLQYSKLTKEILENALGEPVMATVAAAGAPRVGRVRVSPVKTSTMARLL
PSESLSAPKLLVDGSRLSYPDQGDSCFTWRISWRICTSLQRWWLPS
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mRNA from alignment at P-lacustris_contig1155:65759..66342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1155.1196.1 ID=mRNA_P-lacustris_contig1155.1196.1|Name=mRNA_P-lacustris_contig1155.1196.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=584bp|location=Sequence derived from alignment at P-lacustris_contig1155:65759..66342- (Pleurocladia lacustris SAG_25_93)
AGCGGGCTGCAGTACTCCAAGCTCACGAAAGAAATCCTCGAGAATGCTCT
AGGCGAACCAGTCATGGCGACAGTAGCCGCTGCCGGGGCACCCCGGGTGG
GTAGAGTTCGAGTCTCACCGGTCAAAACGTCCACAATGGCGCGACTTCTG
CCCTCCGAGAGTTTATCGGCACCGAAACTTCTAGTGGACGGCTCCAGGTG
AGGACAACGCCGCAGGGGGTCGGGAGTGGGTTGGGGTGGGTATGTAAAGG
GGTTTGGGAGTGGTTGCCGTGGTGATGCATTCATGTCGTGCCTTTGCTTG
GCCTTCCTTCCATTGTCTCTTTTGCCTGCTGCTTGCATCATGTTTAGAGA
GCAACAACAACAAGAAGAGCTGCGTTTGCCAAGACAGCTATGGACGTGGG
GTCCCACGCGGGTCGCATGCAGACAATTTCTGCCAGGCATAAGGCGAATG
TTGCGTTGCTCTTTGTGTCCCGCTGCTGCTTGATAAACCAGGTTATCGTA
TCCGGACCAGGGGGATTCATGTTTCACGTGGAGAATCTCCTGGCGGATCT
GCACATCCCTCCAGAGGTGGTGGTTACCCTCGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1155:65759..66342-

>mRNA_P-lacustris_contig1155.1196.1 ID=mRNA_P-lacustris_contig1155.1196.1|Name=mRNA_P-lacustris_contig1155.1196.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=576bp|location=Sequence derived from alignment at P-lacustris_contig1155:65759..66342- (Pleurocladia lacustris SAG_25_93)
AGCGGGCTGCAGTACTCCAAGCTCACGAAAGAAATCCTCGAGAATGCTCT
AGGCGAACCAGTCATGGCGACAGTAGCCGCTGCCGGGGCACCCCGGGTGG
GTAGAGTTCGAGTCTCACCGGTCAAAACGTCCACAATGGCGCGACTTCTG
CCCTCCGAGAGTTTATCGGCACCGAAACTTCTAGTGGACGGCTCCAGAGC
GGGCTGCAGTACTCCAAGCTCACGAAAGAAATCCTCGAGAATGCTCTAGG
CGAACCAGTCATGGCGACAGTAGCCGCTGCCGGGGCACCCCGGGTGGGTA
GAGTTCGAGTCTCACCGGTCAAAACGTCCACAATGGCGCGACTTCTGCCC
TCCGAGAGTTTATCGGCACCGAAACTTCTAGTGGACGGCTCCAGGTTATC
GTATCCGGACCAGGGGGATTCATGTTTCACGTGGAGAATCTCCTGGCGGA
TCTGCACATCCCTCCAGAGGTGGTGGTTACCCTCGGTTATCGTATCCGGA
CCAGGGGGATTCATGTTTCACGTGGAGAATCTCCTGGCGGATCTGCACAT
CCCTCCAGAGGTGGTGGTTACCCTCG
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