mRNA_P-lacustris_contig115.1163.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig115.1163.1
Unique NamemRNA_P-lacustris_contig115.1163.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.820e-66
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 470
            GYKIIYRRYASLFFIVGV VDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS
Sbjct:   54 GYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.640e-50
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKS 467
            GYKIIYRRYASLFFIVGV   SD+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKPL LMD  S   D+ FGSKS
Sbjct:   54 GYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.710e-44
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVF 455
            GY++IYRRYASLFFIVGV   +D+ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+  MD  +++ DS+F
Sbjct:   54 GYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIF 150
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.790e-42
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDS 428
            GYK++YRRYASLFFIVGV  D D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++DS
Sbjct:   54 GYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDS 141
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A0N7L556_PLAHL (AP complex subunit sigma n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L556_PLAHL)

HSP 1 Score: 144 bits (362), Expect = 2.360e-41
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 434
            GYK+IYRRYASLFFIVGV  D + ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NGYI E N+ ++LKP+ LM+ +S
Sbjct:   47 GYKVIYRRYASLFFIVGVK-DDESENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGYIVETNKISILKPIHLMEKAS 137
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 5.870e-41
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 434
            GYK+IYRRYASLFFIVGV  D D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+ LM+ SS
Sbjct:   54 GYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEKSS 144
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.640e-41
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSK 464
            GYK+IYRRYASLFFIVG+    D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP++LM+ +S   DSVF SK
Sbjct:   73 GYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEKASD--DSVFSSK 169
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 142 bits (359), Expect = 1.060e-40
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 434
            GYK++YRRYASLFFIVG   + D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+ +S
Sbjct:   55 GYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
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BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.460e-40
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 434
            GYK++YRRYASLFFIVGV  D D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+ +S
Sbjct:   55 GYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
[Close]
BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Match: A0A7S4J4X0_9EUKA (AP complex subunit sigma n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J4X0_9EUKA)

HSP 1 Score: 140 bits (352), Expect = 5.060e-40
Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 3 
Query:  159 GYKIIYRRYASLFFIVGVAVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMD 425
            GYK++YRRYASLFFIVGV  + +DENEL +LEFIH LVETLD+YF++VCELDIMFNLEK HFILDEMV+NG I E N+ NVL P+LL+D
Sbjct:   32 GYKVVYRRYASLFFIVGV--EGEDENELAILEFIHALVETLDRYFENVCELDIMFNLEKAHFILDEMVMNGCIIETNKNNVLAPVLLLD 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig115.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPP6_ECTSI1.820e-6699.04AP complex subunit sigma n=1 Tax=Ectocarpus silicu... [more]
A0A835Z9B6_9STRA1.640e-5081.55AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2UUI5_9STRA1.710e-4473.74AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A2R5GZ26_9STRA1.790e-4275.56AP complex subunit sigma n=1 Tax=Hondaea fermental... [more]
A0A0N7L556_PLAHL2.360e-4175.00AP complex subunit sigma n=1 Tax=Plasmopara halste... [more]
F0W0A7_9STRA5.870e-4176.09AP complex subunit sigma n=21 Tax=Oomycota TaxID=4... [more]
A0A7S2FA09_9STRA9.640e-4172.55AP complex subunit sigma n=1 Tax=Florenciella parv... [more]
F0Y567_AURAN1.060e-4075.00AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A7S3ZZG7_9STRA1.460e-4073.91AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A7S4J4X0_9EUKA5.060e-4074.16AP complex subunit sigma n=1 Tax=Prymnesium polyle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig115contigP-lacustris_contig115:140970..142872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2880.D8LPP6
KEGG rclassRC00004,RC00041
KEGG koko:K00649,ko:K12403
KEGG ReactionR01013
KEGG Pathwayko00564,ko04142,ko04146,map00564,map04142,map04146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
EC2.3.1.42
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons3
Model size470
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig115.1163.1prot_P-lacustris_contig115.1163.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig115 141035..142872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.14665-UTR-P-lacustris_contig115:140969..1410341622815455.14665-UTR-P-lacustris_contig115:140969..141034Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 140970..141034 -
1693493549.547946-UTR-P-lacustris_contig115:140969..1410341693493549.547946-UTR-P-lacustris_contig115:140969..141034Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 140970..141034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.1567693-CDS-P-lacustris_contig115:141034..1411521622815455.1567693-CDS-P-lacustris_contig115:141034..141152Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 141035..141152 -
1693493549.5610454-CDS-P-lacustris_contig115:141034..1411521693493549.5610454-CDS-P-lacustris_contig115:141034..141152Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 141035..141152 -
1622815455.1667767-CDS-P-lacustris_contig115:141935..1420401622815455.1667767-CDS-P-lacustris_contig115:141935..142040Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 141936..142040 -
1693493549.5808601-CDS-P-lacustris_contig115:141935..1420401693493549.5808601-CDS-P-lacustris_contig115:141935..142040Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 141936..142040 -
1622815455.180578-CDS-P-lacustris_contig115:142690..1428721622815455.180578-CDS-P-lacustris_contig115:142690..142872Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 142691..142872 -
1693493549.5961099-CDS-P-lacustris_contig115:142690..1428721693493549.5961099-CDS-P-lacustris_contig115:142690..142872Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 142691..142872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig115.1163.1

>prot_P-lacustris_contig115.1163.1 ID=prot_P-lacustris_contig115.1163.1|Name=mRNA_P-lacustris_contig115.1163.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=135bp
MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFF
EFRGTKSSIDGTLLCSSSLVWLLTATTRTNLVCWSLSIVSWRPLTSISKA
CASLISCSTWRRRTSSSTKWSSTDTFVRGIGKTF*
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mRNA from alignment at P-lacustris_contig115:140970..142872-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig115.1163.1 ID=mRNA_P-lacustris_contig115.1163.1|Name=mRNA_P-lacustris_contig115.1163.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1903bp|location=Sequence derived from alignment at P-lacustris_contig115:140970..142872- (Pleurocladia lacustris SAG_25_93)
ATGATCAAGTTTGTGTTGATGGTCAACAAAATGGGCCAGACGCGTGTGTC
GTCTTACTACGACTGGATGCCTATTCCAGAGAGAGTGGCCCTCGAAGCGG
AGGTTGTTCGACGGTGTTTCTCTCGATCAGAACTGCAGTGTTCGTTCTTT
GAGTTTCGGGGTACAAAATCATCTATCGACGGGTGAGCGGCATGCCTGGT
GTCCAGAGAGCTCTAATGGCGAAGCCGCAGCCTGCGTTGCATCAAATCGT
TGCTCACCATGTATCGTGTCGTGAGTAGTTGTCGTCATGCAGGCAACCCT
TAAGTGAATCAAGTGCCCTCTCTGTTCCCTTTTTTGTTTTGGCCACGTGA
TGGGCTCGATATCTCACGTGTCGTGGTCGAGTTGCTGGCATGATTCTGAG
AAGTGCCTTTTGTTTCTGACTCGATCAAGTCTTGGGGGGACTGCTGCACT
GAGTTTGACATGTACGCGGAGATTTGCGCTTGTTTGGTGCGCCATCCTTT
CTTTCTGCTTCAAACGCGGAGGCTGGTATCTCCCTATTATTGTAGCGTGC
AGTCACTCGGAGGCAGGGTTGACGTGTCTCGATGCGGTAGTTGTGGCTCG
AACATTCGTAAACAAAGCCGCCTGTCACCGCACGTCCTCTGTGGGTCAAG
CTGGAGATGTGGCGAGCACCCAATCCTGTTACAAATCAGCAGTCGAGAGT
GTGCTTGAGGAGGATCGTTGAGTAGCAAAATGATCTCTGCCCGCTGTTTG
CACAAGCAAGTATGTCCCGTTTTGTCCCCAGACACCCACAAGCCTGTCGG
TTTGCTTCGCCTTTTACGCCGCCGTCCTCCAGTACGCTTCTCTGTTCTTC
ATCGTTGGTGTGGCTGTTGACAGCGACGACGAGAACGAACTTGGTGTGCT
GGAGTTTATCCATTGTCTCGTGGAGACCCTTGACAAGGTGAGGTTACCAC
TCCCACACTCACGGGTAGGTCATCTTTCGTGAACGTGTCACATGGGAAAA
CGCCGAGGGGAAATGACGTATGCCTAGTCATACAACATTACAAAGCAGTG
GTGACAGCTTTTCGCCTTTGGGCGAACTTCGGTGGGTAGTACCGAATAAT
GCTCGATGAGTAACGTTGGAGATCGGCATATCAGATCGAAGTACGGACAT
CTCTGATTTGTTCAATTAAGGCTTGTCATGTGTAGCGGCCATCGAGCTTA
TTTTCCGGAGGGAGGAAAACTGCCGTGCGCGCCCTTCATGCTAGTGGATG
AGCTTTCGTGAGTTTTGTCACCTCTCGAGTGGGTTGACGGTCTGCATGAG
GTCAGGGCACGATGACATATGGCGAGCGCAAAAATCGGCTCGTGTAGATC
ATTTCCCCGACGGCTTGGAATCCCAAAACCAACGGTTGCACGGAGGGAAA
CGGCGCGAACTTTGAGCACGGCTGACTCCAAGAGGGCCTCGATGCCCTCG
ATGCGATGTGCGTGAGGGGTATTCTTGCCTTGAGCTCCAACTGGAATGAA
ACATCACGTCATTCCATCTCAGCCTTCTTCGACAGTTGACTTGTCACCCA
TTCTGTTCGTGCTATTCGACCTCATGGAGGCTTCCCCAGGCCAAACGAGT
ATTAATTCGTTCAATCGCGACCAGCTTTGTATACTCTGTTTGATACAATG
TTGTAGGACTTCGTGGTGCCATAATCTACCCTAAACCTACCAATGCCTCG
ATATCTCTTGTCAATCACAGTATTTCCAAAGCGTGTGCGAGCTTGATATC
ATGTTCAACCTGGAGAAGACGCACTTCATCCTCGACGAAATGGTCCTCAA
CGGATACATTTGTGAGGGGAATCGGGAAAACGTTCTGAAACCACTTCTGC
TGATGGACTCATCGTCACACGCCGGCGATTCAGTTTTTGGGAGCAAATCG
TCA
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Coding sequence (CDS) from alignment at P-lacustris_contig115:140970..142872-

>mRNA_P-lacustris_contig115.1163.1 ID=mRNA_P-lacustris_contig115.1163.1|Name=mRNA_P-lacustris_contig115.1163.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=810bp|location=Sequence derived from alignment at P-lacustris_contig115:140970..142872- (Pleurocladia lacustris SAG_25_93)
ATGATCAAGTTTGTGTTGATGGTCAACAAAATGGGCCAGACGCGTGTGTC
GTCTTACTACGACTGGATGCCTATTCCAGAGAGAGTGGCCCTCGAAGCGG
AGGTTGTTCGACGGTGTTTCTCTCGATCAGAACTGCAGTGTTCGTTCTTT
GAGTTTCGGGGTACAAAATCATCTATCGACGGATGATCAAGTTTGTGTTG
ATGGTCAACAAAATGGGCCAGACGCGTGTGTCGTCTTACTACGACTGGAT
GCCTATTCCAGAGAGAGTGGCCCTCGAAGCGGAGGTTGTTCGACGGTGTT
TCTCTCGATCAGAACTGCAGTGTTCGTTCTTTGAGTTTCGGGGTACAAAA
TCATCTATCGACGGTACGCTTCTCTGTTCTTCATCGTTGGTGTGGCTGTT
GACAGCGACGACGAGAACGAACTTGGTGTGCTGGAGTTTATCCATTGTCT
CGTGGAGACCCTTGACAAGTACGCTTCTCTGTTCTTCATCGTTGGTGTGG
CTGTTGACAGCGACGACGAGAACGAACTTGGTGTGCTGGAGTTTATCCAT
TGTCTCGTGGAGACCCTTGACAAGTATTTCCAAAGCGTGTGCGAGCTTGA
TATCATGTTCAACCTGGAGAAGACGCACTTCATCCTCGACGAAATGGTCC
TCAACGGATACATTTGTGAGGGGAATCGGGAAAACGTTCTGATATTTCCA
AAGCGTGTGCGAGCTTGATATCATGTTCAACCTGGAGAAGACGCACTTCA
TCCTCGACGAAATGGTCCTCAACGGATACATTTGTGAGGGGAATCGGGAA
AACGTTCTGA
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