mRNA_P-lacustris_contig115.1162.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE) HSP 1 Score: 316 bits (810), Expect = 1.970e-106 Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 1
Query: 1 AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPGQRVLAV 591
AGAPVSKS AIVTAVSTL VL NNSQDTAAL+G RVFGDDGQWWRLLTSMFPLGSVWEL+LCL++IRVFRILERHLGSAKFGSFLFLAA+LSKSIELALCV+FPFFRP LGP+ ILSAV VAYYGYIPSTAPA+ VGNVRVT K FAYAAV++LA D YNS SAGCG +VAL YWS+LSPLQ FRIPG+++ A+
Sbjct: 7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAI 203
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI) HSP 1 Score: 311 bits (796), Expect = 1.070e-105 Identity = 158/197 (80.20%), Postives = 174/197 (88.32%), Query Frame = 1
Query: 1 AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPGQRVLAV 591
AGAPVSKS AI+TAVSTL VL NNSQDTAAL+G RVFGDDGQWWRLLTSMFPLGSVWEL+LCL++IRVFRILERHLGSAKFGSFLFLAA+LSKSIELALCV+FP FRP LGP+ ILSAV VAYYGYIPSTAPA+ +GNVRVT K FAYAAV++LA D YNS SAGCG +VA YWSN SPLQ FRIPG+++ AV
Sbjct: 7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVAFLYWSNRSPLQSFRIPGRQLFAV 203
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: V9F720_PHYPR (UBA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F720_PHYPR) HSP 1 Score: 73.2 bits (178), Expect = 7.100e-12 Identity = 57/191 (29.84%), Postives = 96/191 (50.26%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
GAPV+ ++++ ++ A L + AL + Q+WRL++S + L L+ + FR+LER LGS KFGS L ++S +++LA P+ T+ GP ++ A AV + +IP P F+V + ++K Y +++L D + + G G + L + S SPL R R+P
Sbjct: 28 GAPVTYAFSLAVGAASSASLLLDRGRLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFHALIPFFG-GSFLGLLFSS--SPLGRLRLP 214
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN) HSP 1 Score: 70.5 bits (171), Expect = 5.630e-11 Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFF--RPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPG 573
GAPV+ + ++ ++ A L + + +L+G GQ+WRL +S L++I FR+LER +GS KFGS +F +S ++LA + P R GP A+L A+ V + ++P P +++ + ++K Y +M L + S G L+ + + S +PL + R+PG
Sbjct: 10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVGINFSDKSSTYV-LMAAILLHDPRKLLSYIPGMLLGVLFSS--TPLSKLRLPG 198
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN) HSP 1 Score: 70.1 bits (170), Expect = 7.720e-11 Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
GAPV+ ++++ ++ A L + AL + Q+WRL++S + L L+ + FR+LER LGS KFGS L ++S +++LA P+ T+ GP I+ A AV + +IP P F+V + ++K Y +++L D + G G + L + S +PL R ++P
Sbjct: 10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFRALIPFMG-GSFLGLLFRS--TPLGRLQLP 196
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: D0NK77_PHYIT (UBA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NK77_PHYIT) HSP 1 Score: 70.1 bits (170), Expect = 7.860e-11 Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
GAPV+ ++++ ++ A L + AL + Q+WRL++S + L L+ + FR+LER LGS KFGS L ++S +++LA P+ T+ GP I+ A AV + +IP P F+V + ++K Y +++L D + G G + L + S +PL R ++P
Sbjct: 10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFRALIPFMG-GSFLGLLFRS--TPLGRLQLP 196
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: G4ZVF7_PHYSP (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVF7_PHYSP) HSP 1 Score: 70.1 bits (170), Expect = 8.110e-11 Identity = 54/191 (28.27%), Postives = 95/191 (49.74%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
GAPV+ ++++ ++ A L + AL + Q+WRLL+S + L L+V+ FR+LER +GS KFGS L ++S +++LA P+ + G ++ A AV + +IP +P +VG + ++K Y ++++ D + + G G L + S +PL R R+P
Sbjct: 10 GAPVTYAFSLAVGAASSASLLLDRGRLLALDRDAILAR-AQYWRLLSSQLTFHHGLAVSLGLYVVFQFRVLERQMGSRKFGSILVFTLLISGALQLAALTSAPWLAKMIPGGAYPVIGAFAVFFNRFIPKMSPRSLSVGGLHFSDKSSTYLLMLVILARDYHALIPFLG-GSFFGLLFSS--TPLGRLRLP 196
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD) HSP 1 Score: 69.7 bits (169), Expect = 8.830e-11 Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 1
Query: 124 QWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKY-NSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
Q+WRLLT+ + L+V+ FR++ER +GS KFGS + L+ +ELA + P + GP A+L A+AV + YIP P F+ + ++K Y ++L+ L + N++ S G L L + S +PL R R+P
Sbjct: 34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYPRSFSFSGLNFSDKSSTY--LLLIVMLGRNPNTLLSFAPGALFGLLFSS--TPLARLRLP 181
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A3M6V8B5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8B5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.400e-9 Identity = 57/193 (29.53%), Postives = 95/193 (49.22%), Query Frame = 1
Query: 4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIEL----ALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
GAPV+ ++++ V++ A L + AL V Q+WRL +S + L L+V+ FR+LER LGS KFGS + ++S +++L ++ F P GP +L A+AV + YIP P +V + ++K Y + +L D + G G ++ + + S +PL R R+P
Sbjct: 574 GAPVTYAYSLAVGVASSATLLLDRGHVLALDRDAVL-IRSQYWRLFSSQMTFQHGLAVSLGLYVVFQFRVLERQLGSRKFGSVVVFVMLISGALQLTALSSVSSSLVEFIPG-GPYPVLGALAVYFNRYIPKLQPRTVSVWGMHFSDKSSTYLLIFVLLACDFRALIPFLG-GSVLGMLFHS--TPLGRLRLP 761
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A0W8DAG0_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAG0_PHYNI) HSP 1 Score: 64.7 bits (156), Expect = 8.750e-9 Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 124 QWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTS 498
Q+WRL++S + L L+ + FR+LER LGS KFGS L ++S +++LA P+ T+ GP ++ A AV + +IP P F+V + ++K Y +++ L+ V +
Sbjct: 285 QYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVRRALEAQRRVNA 411 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig115.1162.1 >prot_P-lacustris_contig115.1162.1 ID=prot_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=197bp AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMback to top mRNA from alignment at P-lacustris_contig115:137718..139760+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig115.1162.1 ID=mRNA_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2043bp|location=Sequence derived from alignment at P-lacustris_contig115:137718..139760+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig115:137718..139760+ >mRNA_P-lacustris_contig115.1162.1 ID=mRNA_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1182bp|location=Sequence derived from alignment at P-lacustris_contig115:137718..139760+ (Pleurocladia lacustris SAG_25_93)back to top |