mRNA_P-lacustris_contig115.1162.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig115.1162.1
Unique NamemRNA_P-lacustris_contig115.1162.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 1.970e-106
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 1
Query:    1 AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPGQRVLAV 591
            AGAPVSKS AIVTAVSTL VL NNSQDTAAL+G RVFGDDGQWWRLLTSMFPLGSVWEL+LCL++IRVFRILERHLGSAKFGSFLFLAA+LSKSIELALCV+FPFFRP LGP+ ILSAV VAYYGYIPSTAPA+  VGNVRVT K FAYAAV++LA  D YNS  SAGCG +VAL YWS+LSPLQ FRIPG+++ A+
Sbjct:    7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAI 203          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.070e-105
Identity = 158/197 (80.20%), Postives = 174/197 (88.32%), Query Frame = 1
Query:    1 AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPGQRVLAV 591
            AGAPVSKS AI+TAVSTL VL NNSQDTAAL+G RVFGDDGQWWRLLTSMFPLGSVWEL+LCL++IRVFRILERHLGSAKFGSFLFLAA+LSKSIELALCV+FP FRP LGP+ ILSAV VAYYGYIPSTAPA+  +GNVRVT K FAYAAV++LA  D YNS  SAGCG +VA  YWSN SPLQ FRIPG+++ AV
Sbjct:    7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVAFLYWSNRSPLQSFRIPGRQLFAV 203          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: V9F720_PHYPR (UBA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F720_PHYPR)

HSP 1 Score: 73.2 bits (178), Expect = 7.100e-12
Identity = 57/191 (29.84%), Postives = 96/191 (50.26%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            GAPV+ ++++    ++ A L  +     AL    +     Q+WRL++S         + L L+ +  FR+LER LGS KFGS L    ++S +++LA     P+   T+  GP  ++ A AV +  +IP   P  F+V  +  ++K   Y  +++L   D +  +   G G  + L + S  SPL R R+P
Sbjct:   28 GAPVTYAFSLAVGAASSASLLLDRGRLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFHALIPFFG-GSFLGLLFSS--SPLGRLRLP 214          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 5.630e-11
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFF--RPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPG 573
            GAPV+ + ++    ++ A L  + +   +L+G       GQ+WRL +S             L++I  FR+LER +GS KFGS +F    +S  ++LA  +  P    R   GP A+L A+ V +  ++P   P  +++  +  ++K   Y  +M    L     + S   G L+ + + S  +PL + R+PG
Sbjct:   10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVGINFSDKSSTYV-LMAAILLHDPRKLLSYIPGMLLGVLFSS--TPLSKLRLPG 198          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN)

HSP 1 Score: 70.1 bits (170), Expect = 7.720e-11
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            GAPV+ ++++    ++ A L  +     AL    +     Q+WRL++S         + L L+ +  FR+LER LGS KFGS L    ++S +++LA     P+   T+  GP  I+ A AV +  +IP   P  F+V  +  ++K   Y  +++L   D    +   G G  + L + S  +PL R ++P
Sbjct:   10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFRALIPFMG-GSFLGLLFRS--TPLGRLQLP 196          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: D0NK77_PHYIT (UBA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NK77_PHYIT)

HSP 1 Score: 70.1 bits (170), Expect = 7.860e-11
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            GAPV+ ++++    ++ A L  +     AL    +     Q+WRL++S         + L L+ +  FR+LER LGS KFGS L    ++S +++LA     P+   T+  GP  I+ A AV +  +IP   P  F+V  +  ++K   Y  +++L   D    +   G G  + L + S  +PL R ++P
Sbjct:   10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRS-QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRDFRALIPFMG-GSFLGLLFRS--TPLGRLQLP 196          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: G4ZVF7_PHYSP (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVF7_PHYSP)

HSP 1 Score: 70.1 bits (170), Expect = 8.110e-11
Identity = 54/191 (28.27%), Postives = 95/191 (49.74%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            GAPV+ ++++    ++ A L  +     AL    +     Q+WRLL+S         + L L+V+  FR+LER +GS KFGS L    ++S +++LA     P+    +  G   ++ A AV +  +IP  +P   +VG +  ++K   Y  ++++   D +  +   G G    L + S  +PL R R+P
Sbjct:   10 GAPVTYAFSLAVGAASSASLLLDRGRLLALDRDAILAR-AQYWRLLSSQLTFHHGLAVSLGLYVVFQFRVLERQMGSRKFGSILVFTLLISGALQLAALTSAPWLAKMIPGGAYPVIGAFAVFFNRFIPKMSPRSLSVGGLHFSDKSSTYLLMLVILARDYHALIPFLG-GSFFGLLFSS--TPLGRLRLP 196          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-11
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  124 QWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKY-NSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            Q+WRLLT+         +   L+V+  FR++ER +GS KFGS +     L+  +ELA  +  P     +  GP A+L A+AV +  YIP   P  F+   +  ++K   Y  ++L+  L +  N++ S   G L  L + S  +PL R R+P
Sbjct:   34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYPRSFSFSGLNFSDKSSTY--LLLIVMLGRNPNTLLSFAPGALFGLLFSS--TPLARLRLP 181          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A3M6V8B5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8B5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.400e-9
Identity = 57/193 (29.53%), Postives = 95/193 (49.22%), Query Frame = 1
Query:    4 GAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIEL----ALCVQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIP 570
            GAPV+ ++++   V++ A L  +     AL    V     Q+WRL +S         + L L+V+  FR+LER LGS KFGS +    ++S +++L    ++      F P  GP  +L A+AV +  YIP   P   +V  +  ++K   Y  + +L   D    +   G G ++ + + S  +PL R R+P
Sbjct:  574 GAPVTYAYSLAVGVASSATLLLDRGHVLALDRDAVL-IRSQYWRLFSSQMTFQHGLAVSLGLYVVFQFRVLERQLGSRKFGSVVVFVMLISGALQLTALSSVSSSLVEFIPG-GPYPVLGALAVYFNRYIPKLQPRTVSVWGMHFSDKSSTYLLIFVLLACDFRALIPFLG-GSVLGMLFHS--TPLGRLRLP 761          
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Match: A0A0W8DAG0_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAG0_PHYNI)

HSP 1 Score: 64.7 bits (156), Expect = 8.750e-9
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  124 QWWRLLTSMFPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALCVQFPFFRPTL--GPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYAAVMLLACLDKYNSVTS 498
            Q+WRL++S         + L L+ +  FR+LER LGS KFGS L    ++S +++LA     P+   T+  GP  ++ A AV +  +IP   P  F+V  +  ++K   Y  +++   L+    V +
Sbjct:  285 QYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVRRALEAQRRVNA 411          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig115.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L6R3_9PHAE1.970e-10681.73UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LPP7_ECTSI1.070e-10580.20Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
V9F720_PHYPR7.100e-1229.84UBA domain-containing protein n=8 Tax=Phytophthora... [more]
A0A2D4C2S4_PYTIN5.630e-1128.13UBA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A833T6G0_PHYIN7.720e-1129.32Putative DSC E3 ubiquitin ligase complex subunit 2... [more]
D0NK77_PHYIT7.860e-1129.32UBA domain-containing protein n=3 Tax=Phytophthora... [more]
G4ZVF7_PHYSP8.110e-1128.27UBA domain-containing protein n=4 Tax=Phytophthora... [more]
K3W5T0_GLOUD8.830e-1132.89UBA domain-containing protein n=1 Tax=Globisporang... [more]
A0A3M6V8B5_9STRA7.400e-929.53Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0W8DAG0_PHYNI8.750e-930.71Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig115contigP-lacustris_contig115:137718..139760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue3e-14
Seed eggNOG ortholog157072.XP_008867160.1
Preferred nameUBAC2
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Ubiquitin-associated domain-containing protein
EggNOG OGsKOG4463@1,KOG4463@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-18_001990.1
EC3.4.22.15
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Exons5
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig115.1162.1prot_P-lacustris_contig115.1162.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig115 137718..139760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.4487476-CDS-P-lacustris_contig115:137717..1378211622815457.4487476-CDS-P-lacustris_contig115:137717..137821Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 137718..137821 +
1693493550.8177466-CDS-P-lacustris_contig115:137717..1378211693493550.8177466-CDS-P-lacustris_contig115:137717..137821Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 137718..137821 +
1622815457.4607642-CDS-P-lacustris_contig115:138592..1387091622815457.4607642-CDS-P-lacustris_contig115:138592..138709Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 138593..138709 +
1693493550.8385234-CDS-P-lacustris_contig115:138592..1387091693493550.8385234-CDS-P-lacustris_contig115:138592..138709Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 138593..138709 +
1622815457.4719248-CDS-P-lacustris_contig115:139074..1392261622815457.4719248-CDS-P-lacustris_contig115:139074..139226Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139075..139226 +
1693493550.8518686-CDS-P-lacustris_contig115:139074..1392261693493550.8518686-CDS-P-lacustris_contig115:139074..139226Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139075..139226 +
1622815457.4837291-CDS-P-lacustris_contig115:139394..1394831622815457.4837291-CDS-P-lacustris_contig115:139394..139483Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139395..139483 +
1693493550.8620489-CDS-P-lacustris_contig115:139394..1394831693493550.8620489-CDS-P-lacustris_contig115:139394..139483Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139395..139483 +
1622815457.493825-CDS-P-lacustris_contig115:139631..1397601622815457.493825-CDS-P-lacustris_contig115:139631..139760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139632..139760 +
1693493550.879076-CDS-P-lacustris_contig115:139631..1397601693493550.879076-CDS-P-lacustris_contig115:139631..139760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 139632..139760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig115.1162.1

>prot_P-lacustris_contig115.1162.1 ID=prot_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=197bp
AGAPVSKSWAIVTAVSTLAVLHNNSQDTAALVGFRVFGDDGQWWRLLTSM
FPLGSVWELMLCLHVIRVFRILERHLGSAKFGSFLFLAAVLSKSIELALC
VQFPFFRPTLGPVAILSAVAVAYYGYIPSTAPAFFAVGNVRVTEKIFAYA
AVMLLACLDKYNSVTSAGCGGLVALFYWSNLSPLQRFRIPGQRVLAV
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mRNA from alignment at P-lacustris_contig115:137718..139760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig115.1162.1 ID=mRNA_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2043bp|location=Sequence derived from alignment at P-lacustris_contig115:137718..139760+ (Pleurocladia lacustris SAG_25_93)
GCTGGAGCTCCTGTGAGCAAGTCGTGGGCTATCGTTACGGCCGTTTCTAC CTTGGCTGTTCTCCACAACAACAGCCAAGATACCGCTGCACTAGTAGGTT TTAGGTGAGGATTTGTGTAAAGTGTTTACAACGGTTGTGCCGTATTGAGT AATGAAAACCACAGTATTGAAGATCCTCGCCGGTCCTGCGGGCAGGAAGT TGCCTTTGACAAGACGATACCTACCGCAGGGCCCCAAGGGGCTCACTATA AGGTTGACCCAAGCGCGCTGACGCCACCACAACAATCTCTGGGGTTACGG CCATTTCGGGGGCGGGCGGGTACGTGATGGGAGGGGTGAATGACCCAGTT GCCGCTGGACCTTATTCCATGGGCCTCTTGGAGTTTCTCCGCTGCTCGTG TGTCACTCTTGGCCACCGGGCAGACTAGAGTCTTCCGTCTTGGCTTCGGT TGGGTAGCACACCACATTCTATTTTGTGTGTGGGCGTGTGGGCGGGTGAA ACAGAACACATGCGCACACCGTGCACCAGAGGCACGCAACCATCAACTTG AAACTTTTCCTCCGGCACCACCCGTGTTCAGGTTGATTAGCAAAGAGCCT TGTGTGCGCACGCTCTTTCGGTCAATAGCGCGGTTAGGGCTGTTGCCCAT GGCCAAGTTAAGATGAAATGCATGGGAGAAGAGCGATATTTTCAACTGGG CGGCAAGAGGGTTACAATGTCAAAATTATAGTTACGTGTTTGCTGCAGTA CATGCACAGGAGTAATAAGTTACGTGCTTGCTCGGATTGTTTTTGGCGAT AGCACAAACCTTTTGTACTGCACTTGCCGTGTTCACCCTATTTTAGCACA TTATCTCGTTTGCTCTCTTCGACAGAGTTTTTGGGGACGATGGCCAATGG TGGCGACTTCTCACCAGCATGTTTCCGCTGGGAAGCGTATGGGAGCTGAT GTTGTGTCTCCATGTTATCCGAGTGTTTCGGATCTTAGAAAGGTAAGGTT TGCTGTCGTTTTATTGTTGCCTTCGCTTGCATTTTTGCCTGCCCTGCGGA CTTGCCTACATATCTGAGGAGCTCCGATCGGGGTCACTCAGAAGGATTCC TCTGTGACGCTTCCTCAGATGTACTCATGACCCCAGCGGTCAAGGTTTTC AAGCTTACCACGATGATGTGCGCATTCGAGGGTAGGAGCTTGTTGCGTAT TTGGCTCTATCCGTTAACACCACTTGCTGGGCTTTTACCTATTCTGATTG TCCCGCCCTGAATTTGTTCGCCTCACGCATGTCGTGAGCTCGTCGACTTC GCGGCTCAACACTAATTGAGCGCGTGTCTCGCCACTTTCCTGTCGTCATC CGCGCAGACATCTTGGATCTGCCAAGTTTGGTTCCTTCCTGTTCCTCGCT GCGGTGTTGTCCAAAAGCATAGAACTGGCGCTCTGTGTGCAGTTCCCTTT TTTCCGGCCAACACTTGGCCCGGTTGCCATCCTCAGCGCTGTCGCGGTAG CCTACTACGGTGAGAAGCTCTCGGTTTTGATTTAGGATAAAGTCAGGGAC GCCCGTGGAGGGATCGAAGTGCACCCTGCATAGAAGGACGGAAGAGGCGA GGTTACAGCGGCTAGCTCCTCTGACCAAAGGCAAGCTTCCTCTGACCAAA TCACCTTCATTGCGTCGCTCGCCCCAGGTTACATCCCTTCGACTGCGCCA GCATTTTTCGCCGTCGGGAACGTGCGCGTGACAGAAAAAATCTTCGCCTA CGCCGCGGTGATGTTGGTGAGAGTCACATTTACAATTTCGACTCTTTGGT TGCTCAGGAACAGGGTCAACCATGCAGCTATGCACCATTTGTCAGCGCGC TGTTGAAGCAAATTGTTCTCGCCGCTGTCTTGCGATCATGCTGAATTCTG CCTTCCCAATGCAGCTCGCATGTCTCGACAAATACAACTCGGTGACGTCT GCTGGGTGCGGTGGTTTGGTGGCGCTCTTTTACTGGTCGAATCTGTCGCC ACTCCAGCGCTTTCGGATTCCGGGTCAGCGAGTACTTGCGGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig115:137718..139760+

>mRNA_P-lacustris_contig115.1162.1 ID=mRNA_P-lacustris_contig115.1162.1|Name=mRNA_P-lacustris_contig115.1162.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1182bp|location=Sequence derived from alignment at P-lacustris_contig115:137718..139760+ (Pleurocladia lacustris SAG_25_93)
GCTGGAGCTCCTGTGAGCAAGTCGTGGGCTATCGTTACGGCCGTTTCTAC
CTTGGCTGTTCTCCACAACAACAGCCAAGATACCGCTGCACTAGTAGGTT
TTAGGCTGGAGCTCCTGTGAGCAAGTCGTGGGCTATCGTTACGGCCGTTT
CTACCTTGGCTGTTCTCCACAACAACAGCCAAGATACCGCTGCACTAGTA
GGTTTTAGAGTTTTTGGGGACGATGGCCAATGGTGGCGACTTCTCACCAG
CATGTTTCCGCTGGGAAGCGTATGGGAGCTGATGTTGTGTCTCCATGTTA
TCCGAGTGTTTCGGATCTTAGAAAGAGTTTTTGGGGACGATGGCCAATGG
TGGCGACTTCTCACCAGCATGTTTCCGCTGGGAAGCGTATGGGAGCTGAT
GTTGTGTCTCCATGTTATCCGAGTGTTTCGGATCTTAGAAAGACATCTTG
GATCTGCCAAGTTTGGTTCCTTCCTGTTCCTCGCTGCGGTGTTGTCCAAA
AGCATAGAACTGGCGCTCTGTGTGCAGTTCCCTTTTTTCCGGCCAACACT
TGGCCCGGTTGCCATCCTCAGCGCTGTCGCGGTAGCCTACTACGACATCT
TGGATCTGCCAAGTTTGGTTCCTTCCTGTTCCTCGCTGCGGTGTTGTCCA
AAAGCATAGAACTGGCGCTCTGTGTGCAGTTCCCTTTTTTCCGGCCAACA
CTTGGCCCGGTTGCCATCCTCAGCGCTGTCGCGGTAGCCTACTACGGTTA
CATCCCTTCGACTGCGCCAGCATTTTTCGCCGTCGGGAACGTGCGCGTGA
CAGAAAAAATCTTCGCCTACGCCGCGGTGATGTTGGTTACATCCCTTCGA
CTGCGCCAGCATTTTTCGCCGTCGGGAACGTGCGCGTGACAGAAAAAATC
TTCGCCTACGCCGCGGTGATGTTGCTCGCATGTCTCGACAAATACAACTC
GGTGACGTCTGCTGGGTGCGGTGGTTTGGTGGCGCTCTTTTACTGGTCGA
ATCTGTCGCCACTCCAGCGCTTTCGGATTCCGGGTCAGCGAGTACTTGCG
GTGCTCGCATGTCTCGACAAATACAACTCGGTGACGTCTGCTGGGTGCGG
TGGTTTGGTGGCGCTCTTTTACTGGTCGAATCTGTCGCCACTCCAGCGCT
TTCGGATTCCGGGTCAGCGAGTACTTGCGGTG
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