mRNA_P-lacustris_contig115.1157.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig115.1157.1
Unique NamemRNA_P-lacustris_contig115.1157.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig115.1157.1 vs. uniprot
Match: D8LPQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.580e-44
Identity = 98/148 (66.22%), Postives = 108/148 (72.97%), Query Frame = 3 
Query:   69 MTRRELPQALTLERFAAGKDGRANAFKKKKQANKRKLFEKAQLKRQYAKLLRKETAATGAGHEAEAWRPDGAADVAKEDLEGPLTLADNRRGKGEARGARTKRGRE-HPDGENGEREEEVTKESQQLRKPGKWRRPEHRPDPFKAAKA 509
            M R+ELPQALTLE+FAAGKDGRANAFKKKKQA KRKLFEKAQLKRQYAKLL+KE       H  +A R DGAA V KE   G L L  NR+ K EA G   KR RE   D ++GER++      Q+ RKPGKWRRPEHRPDPFKAAKA
Sbjct:    1 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTARGEHGPDAPRSDGAAGVGKEKRAGRLVLTPNRKWKEEASGGELKRRRELSDDRQSGERQQVAEGRKQEQRKPGKWRRPEHRPDPFKAAKA 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig115.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPQ1_ECTSI1.580e-4466.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig115contigP-lacustris_contig115:115542..119704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size992
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig115.1157.1prot_P-lacustris_contig115.1157.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig115 115610..119410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.0410755-UTR-P-lacustris_contig115:115541..1156091622815457.0410755-UTR-P-lacustris_contig115:115541..115609Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 115542..115609 +
1693493550.54806-UTR-P-lacustris_contig115:115541..1156091693493550.54806-UTR-P-lacustris_contig115:115541..115609Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 115542..115609 +
1622815457.0869343-UTR-P-lacustris_contig115:119410..1197041622815457.0869343-UTR-P-lacustris_contig115:119410..119704Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 119411..119704 +
1693493550.5860007-UTR-P-lacustris_contig115:119410..1197041693493550.5860007-UTR-P-lacustris_contig115:119410..119704Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 119411..119704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.0508077-CDS-P-lacustris_contig115:115609..1157031622815457.0508077-CDS-P-lacustris_contig115:115609..115703Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115610..115703 +
1693493550.5590577-CDS-P-lacustris_contig115:115609..1157031693493550.5590577-CDS-P-lacustris_contig115:115609..115703Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115610..115703 +
1622815457.0608516-CDS-P-lacustris_contig115:115926..1162701622815457.0608516-CDS-P-lacustris_contig115:115926..116270Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115927..116270 +
1693493550.5704181-CDS-P-lacustris_contig115:115926..1162701693493550.5704181-CDS-P-lacustris_contig115:115926..116270Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115927..116270 +
1622815457.0742164-CDS-P-lacustris_contig115:119218..1194101622815457.0742164-CDS-P-lacustris_contig115:119218..119410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 119219..119410 +
1693493550.5783272-CDS-P-lacustris_contig115:119218..1194101693493550.5783272-CDS-P-lacustris_contig115:119218..119410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 119219..119410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig115.1157.1

>prot_P-lacustris_contig115.1157.1 ID=prot_P-lacustris_contig115.1157.1|Name=mRNA_P-lacustris_contig115.1157.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=210bp
MTRRELPQALTLERFAAGKDGRANAFKKKKQANKRKLFEKAQLKRQYAKL
LRKETAATGAGHEAEAWRPDGAADVAKEDLEGPLTLADNRRGKGEARGAR
TKRGREHPDGENGEREEEVTKESQQLRKPGKWRRPEHRPDPFKAAKATAD
ERRQEAEKKQRKRDMQIAEKEARAKKRRKQHALLSKRTRGATSDEKYHEV
SLEKIHSQT*
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mRNA from alignment at P-lacustris_contig115:115542..119704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig115.1157.1 ID=mRNA_P-lacustris_contig115.1157.1|Name=mRNA_P-lacustris_contig115.1157.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4163bp|location=Sequence derived from alignment at P-lacustris_contig115:115542..119704+ (Pleurocladia lacustris SAG_25_93)
CGGAAGTGCACAGCCTACTGCTGTGTCTTCTGATCTGCATCGCCCTTTCT
CTCTCGCTTCCGGCTGCGATGACCCGGAGAGAGCTACCCCAAGCCCTTAC
GCTCGAGAGATTCGCTGCTGGTAAAGACGGTCGAGCCAATGCCTTCAAGA
AAAAGAAGCAAGGTACACTCGACAGCGGCATAATTGCAATCATGGCGAGC
ATGGTATTTCAAAGAGACCAATACTTGTGACGTTCCTTAAAAGTGTGATT
GCTGTCTTTCATGCGTCGTTTTGTGGGCTTGGCTCGCCTACGAACCTCAC
TGCGTACGATGAGCGCATACTTCGTATGGTAGTTGAACGTGTTGCGACCG
ACAGGATTGCTTTGCCTCGTTCCCTGTGTTTCCAGCAAACAAGCGCAAGC
TGTTCGAGAAGGCCCAGCTCAAGCGGCAATACGCCAAGCTCTTGAGGAAA
GAAACGGCCGCCACAGGAGCAGGACACGAGGCTGAGGCTTGGCGACCCGA
CGGTGCGGCCGATGTAGCGAAGGAGGATCTTGAAGGCCCATTGACCCTTG
CAGACAACAGGAGGGGGAAAGGGGAGGCGAGGGGTGCCCGAACCAAGCGA
GGGCGCGAACACCCGGATGGCGAAAACGGAGAGCGAGAGGAAGAAGTGAC
GAAGGAAAGTCAGCAGCTGCGCAAGCCAGGGAAGTGGAGGAGGCCAGAAC
ACAGGCCAGATCCCTTCAAGGCCGCCAAGGTGAAGACTTGTCATGAGAAC
TGCCTCCAACGACCTACTGCATGCCATCACTTAAAATACACACCCGCTGC
TTCATGAACCGTATTCCACAAAGGGCAGCATAACCCGTTTGCAATGACTC
TTTGGCTTGAAACACAGGCCACGGCCAGAAGAGGGTACATACTCTGTCAT
TTCTAGGCTAAAGCAGGTACAGCAGTCTGAGTCAAAGCTTGCCAGGCACT
AATAGAGCCAGGTGATTGGCCACTGCACACCTTCTCACCTGCTGCTGGCC
GCCAAAATCGGGGGTATTTCCTCCAAAGGCTACTCAGGTCACGGCCACAC
ACCCTGCTTGGCTGCCCCGTTCACCTTCTTTTGGCCTGTTGAAAACGCGT
GTTCACCCGGTTGCATGGTAGTACAGAAGGAGGTTGTTCAAAATAGAGAA
GACAAGGGAGCCAGCGTAAAGAGTGCAGAGGGACAGCTTTTTATGTCTTT
CGTCATATTTGGCAATCAGCCAGAGGCGGGACACGTGCTGGGCATGTGCG
CCTGCATGCCTGTCTGTATTTACCGCGTCTTCGCCGATGCCCACCCTAGG
GCGTAGGGGGGAATGCTGGCTGGCCCTTAAAAGCGTGTACATGCCTCGTG
GTGAGGGTAGATGGCGGTAATCGAACAAGGCGATAAGCGGATGTACAACC
GCGCTTGTCAGAAGCTTATCTTTCGGCTCCGTTTTCCCTCACTCCTCCTG
TGACAGCTAAGCTTCGACAACTAATTCTGAATATGCCGTATTTTACGCAA
GATAGCACACCCCGAAGAACTCGTTTTGGTGCCCGAAAACATTATCGCCG
GGGGTGGCATTCTGTGGGGTGTGTGGTATATTTTATGACCTGGGTGATAC
GGTCAAGATCGTGGGAACCATGAAAGGGGTATCTTAACCACGGGTTGTGA
GGGGTGTGAAGGATCCTGCAGCATGCCGTGGAGTTTCCTGCAGGGACATG
GTTCTGTTCTCCCTGCACGTACGTGTCGTTGATGGTCGCCACGCGGTATG
GTTCCCGCACACAGAAGATGCGTCGCGTGCGTTCTCTGTGCGTGACCGGC
CAGGTCATCGCCATGTCACTTATGTTTTGAGCTTCGGAGGCGGGTGCGCC
CTTGGTCGCCAAAATAGGTAGATATAGATGTATGGCCTTGAGGCCGGGTC
TCGGACCCTTGGATGTGTGGCCTTGAGGCCGGGCCTTGGACCCTTGGAAA
TAGATAGTCTTGAGACTGTTGTCTCTTGGAGACGAATGGTGTGGCCTTGA
GGCCGGGCCCTTGATGACCCTATGTGGCTTATAGATGCCGGGCCTTGGAC
CCTTGGAAGTTGGATGGTGGTCCGTCTCTTGGACTTGAAAAGATTGATCC
CATAAAACACACGAGCAAAGAGGGATAAGAAGGAAGTGGGCTCATAAAGG
CACACGACACACTTTTCCACTCTCCTAAACCCCTGCCCTCATTTGCCAAC
AAAAGGGTCCAAGCCAGAGCCTCCATTCATTGGTGGAGATAACCCCTGTA
CTTCAACTCATCATTCCTGCTCTCATCATACGTCATCCATCCTATACCGC
CGCATATTTCATACATACGTACTCAACCGTTACCTCAAGATCCACTGCTA
CAAGTACCTCAAACAACTTATCACCCGGGGTGATATGCGGAGGCCACTTG
GTTTAATTGGGCATAGCCTCAGGGGGTGGTATCTAATGTGGTATCTATTG
TGACCCGGGGGATAGTTCGGCCCTTCGTTTGGATCTATAATATTCATGAC
CGGGCGTGATATTCTGCGGGGGTTGGTTTCTTTCGGGGGTTGTTATCTGA
TGTAGAATACGGTATGTTGCGGCCAGTCCTATCCACGTTGGTTCTGGGGC
AATCCGTACGTCCCCACCCCTCAACGAAAAGAGCAAGAAGGCAAGGATAG
AGTGGTTTTCTCTCAGCGCTGTGCAGAACGGCACCCGCACGTAAGAGTAC
TGAGTGGCGGTGTTGTCATATGTACACCCCCTCATACGCCTTGAATTTTG
CGTGCGAGGCGCTGCGATCTGGGACATGCATCAAAGACATGAGCATGGAG
CGCAAACGCGTAGCGCCAGCTCCATATAGATCTAAAGAGTGATAGAGGAT
GTGTGTGTCATTCTGAAGCCCCTTTAGTTTTTTCAGTTTCTGTCGCGGCT
ACAAATTTCCCTACCCAGAATCTTGACCCCAACTTCTTTCATGCCATGTG
TTTTCTCTTGACACGTGCAACCTACAGCCACGCCGTCGCGGCCGTGTCTC
CGCACACAGCCCATGCGCGCAGAGCGCTGTACAAATAAGATTCGTGTGAG
AGTCCTCCACCTGCGCGGCAGATATGGCGGTTCTGAAGACACTTCAGAGT
AGGGTGGGCGCCAGGGGGAGCTTGGCGTTCGGGGAGGCCGTGCTCCGCGC
GCACGGTCTGTGTGTTTGCCGAGGCACACCCGTGACAGCGTGGCCGTACG
TTGCGTGTGGCGATCGAAAATCAATGCCGTCAAACCCTCTCTATTGTGCG
ATTTTTTTGCCGCAACAGAACCGTAGTTTGATACAGATTAATTGTCGAAC
GCAAACCCGCACGCGGGACGGCAACTTTTAGTCACTCGTGACCCGTTCCG
GACAAGGCACTTTCGGAGAAGGCGTTACGAGCTGTGTCAAGTGAATTGAA
CCCCACTCCATCGGGTGCAGCGTGCGATTCATACCGCTTTAAAGACCGGA
ATCGGGTTTCTAGACGGCAGGGTCTAGTTGACGTGACCAACCTGCTGTCG
AGTTTCGTACTGGGGGCTCTTAGTAGGTTAGTCTGTGGCGTTTCGAAGAG
TGTCAGCGATGAAACAATGCCCGTACCTCAAGCGAAACAAATAACTTTGC
ACTCGTAAGAGGGGGTCCTGAGAATAAGCATGGGAAACGTTTGTTTGCCC
TCCTCTACTTGTCTTCGTTCCAACCAGGCAACGGCCGACGAACGGAGGCA
GGAGGCGGAGAAAAAGCAGCGGAAGCGAGACATGCAAATAGCCGAGAAGG
AAGCACGCGCCAAGAAAAGGAGAAAGCAGCACGCCTTATTGTCCAAGCGT
ACAAGGGGGGCAACCAGTGATGAAAAATACCATGAAGTATCTCTTGAGAA
AATTCATTCGCAGACGTGACGAAAAGCAGGCTGACGTCATTTTGAGATCA
GAAATCACATGCAGCGTCAAGAGTCGTAGGAGAAGCGCCTCGAGTAGCTT
GGTCGTCATCGTGCACGGGGGTTTGGGTGGAACACGTCTTGGTCCCGACG
AAGGAAAGAGAAGAGCGGGTGGGCGTCATGACTATCGCTCCCAGGCAGGC
TCGGCAGTGTTGGCTCAATGGGGCGATAGTCATGACGATTTGACGGACAC
GTGCCCGCGGAGAGATGTGCTCGAGGTTTGCGCGCAGATTGCTGTGGATG
TTTTCCAAAATTT
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Coding sequence (CDS) from alignment at P-lacustris_contig115:115542..119704+

>mRNA_P-lacustris_contig115.1157.1 ID=mRNA_P-lacustris_contig115.1157.1|Name=mRNA_P-lacustris_contig115.1157.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1260bp|location=Sequence derived from alignment at P-lacustris_contig115:115542..119704+ (Pleurocladia lacustris SAG_25_93)
ATGACCCGGAGAGAGCTACCCCAAGCCCTTACGCTCGAGAGATTCGCTGC
TGGTAAAGACGGTCGAGCCAATGCCTTCAAGAAAAAGAAGCAAGATGACC
CGGAGAGAGCTACCCCAAGCCCTTACGCTCGAGAGATTCGCTGCTGGTAA
AGACGGTCGAGCCAATGCCTTCAAGAAAAAGAAGCAAGCAAACAAGCGCA
AGCTGTTCGAGAAGGCCCAGCTCAAGCGGCAATACGCCAAGCTCTTGAGG
AAAGAAACGGCCGCCACAGGAGCAGGACACGAGGCTGAGGCTTGGCGACC
CGACGGTGCGGCCGATGTAGCGAAGGAGGATCTTGAAGGCCCATTGACCC
TTGCAGACAACAGGAGGGGGAAAGGGGAGGCGAGGGGTGCCCGAACCAAG
CGAGGGCGCGAACACCCGGATGGCGAAAACGGAGAGCGAGAGGAAGAAGT
GACGAAGGAAAGTCAGCAGCTGCGCAAGCCAGGGAAGTGGAGGAGGCCAG
AACACAGGCCAGATCCCTTCAAGGCCGCCAAGCAAACAAGCGCAAGCTGT
TCGAGAAGGCCCAGCTCAAGCGGCAATACGCCAAGCTCTTGAGGAAAGAA
ACGGCCGCCACAGGAGCAGGACACGAGGCTGAGGCTTGGCGACCCGACGG
TGCGGCCGATGTAGCGAAGGAGGATCTTGAAGGCCCATTGACCCTTGCAG
ACAACAGGAGGGGGAAAGGGGAGGCGAGGGGTGCCCGAACCAAGCGAGGG
CGCGAACACCCGGATGGCGAAAACGGAGAGCGAGAGGAAGAAGTGACGAA
GGAAAGTCAGCAGCTGCGCAAGCCAGGGAAGTGGAGGAGGCCAGAACACA
GGCCAGATCCCTTCAAGGCCGCCAAGGCAACGGCCGACGAACGGAGGCAG
GAGGCGGAGAAAAAGCAGCGGAAGCGAGACATGCAAATAGCCGAGAAGGA
AGCACGCGCCAAGAAAAGGAGAAAGCAGCACGCCTTATTGTCCAAGCGTA
CAAGGGGGGCAACCAGTGATGAAAAATACCATGAAGTATCTCTTGAGAAA
ATTCATTCGCAGACGTGAGCAACGGCCGACGAACGGAGGCAGGAGGCGGA
GAAAAAGCAGCGGAAGCGAGACATGCAAATAGCCGAGAAGGAAGCACGCG
CCAAGAAAAGGAGAAAGCAGCACGCCTTATTGTCCAAGCGTACAAGGGGG
GCAACCAGTGATGAAAAATACCATGAAGTATCTCTTGAGAAAATTCATTC
GCAGACGTGA
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