mRNA_P-lacustris_contig115.1156.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig115.1156.1
Unique NamemRNA_P-lacustris_contig115.1156.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: D8LPQ2_ECTSI (ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ2_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 1.800e-127
Identity = 187/192 (97.40%), Postives = 189/192 (98.44%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRARPRV 649
            MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKG FKKV GIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFV+DSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADI+VQFDMHKITKVAFRLQPCSGLTCDGV EGIHWIVDEAKKRARPRV
Sbjct:    1 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPRV 192          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A835YY21_9STRA (ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY21_9STRA)

HSP 1 Score: 261 bits (667), Expect = 3.420e-82
Identity = 125/189 (66.14%), Postives = 155/189 (82.01%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            MFSL+AGL RYL SKT++NVLILGLD AGKTTLLEQMKG FKKVPGIPP+KIPPT+GLNV KMD+GG  +TFWD+GGQVR+R+LWE+YYADAH LI V+DSAD  RFEEA++AF  V+EQ ELH +PL++LANKQD+  A S  DIA QFD HK+  V FR+   S L+ +GV EGI W++ +A+++ +
Sbjct:    1 MFSLLAGLWRYLTSKTQVNVLILGLDDAGKTTLLEQMKGIFKKVPGIPPAKIPPTIGLNVAKMDIGGVSVTFWDVGGQVRLRALWERYYADAHALICVMDSADAARFEEAQLAFHAVREQAELHALPLLLLANKQDVAGACSGGDIAAQFDAHKVMGVPFRVHAVSALSGEGVNEGISWLIAKAREKTQ 189          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A7S2BA16_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA16_9STRA)

HSP 1 Score: 263 bits (671), Expect = 5.610e-82
Identity = 118/192 (61.46%), Postives = 157/192 (81.77%), Query Frame = 2
Query:   65 TNSMFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            + +MFSLI+G  +  F+K E+ VLILGLD+AGKTTLLEQMKG F K  GIPP +IPPT+GLN+GKMDVG C++ FWDLGGQVR+RS+WEKYYA+AHG++FV+DSADVGR EEA++AFD V+E  EL G+P+++LANKQDLP A++  DIA+ F++H +     RLQP S LTC+G+E+G+ W+V+E++   R
Sbjct:   57 SGTMFSLISGFWKIFFAKVEVQVLILGLDHAGKTTLLEQMKGLFNKQQGIPPERIPPTIGLNIGKMDVGTCRVIFWDLGGQVRMRSIWEKYYAEAHGMVFVIDSADVGRMEEAKLAFDAVREHEELRGIPVLLLANKQDLPGAMAIEDIAMHFEIHNLPPRLVRLQPASCLTCEGIEDGVRWVVEESRTADR 248          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: W7TPL1_9STRA (1-family small gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL1_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.130e-77
Identity = 117/190 (61.58%), Postives = 154/190 (81.05%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKV-AFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            MFSL+AG I+YLFSKTE++VLILGLD+AGKTTLLEQ KG F+KV GIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA++AF ++ +  +L  VP+++ ANKQDLP A+S  D+A  F++ ++ +    ++  CS LTC+G+E G+ W+V EAK  AR
Sbjct:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A4D9CTS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTS6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.310e-60
Identity = 104/175 (59.43%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  119 TEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKV-AFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            ++++VLILGLD+AGKTTLLEQ KG F+KV GIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA++AF ++ +  +L  VP+++ ANKQDLP A+S  D+A  F + ++ +    ++ PCS LTC+G+E G+ W+V EAK  AR
Sbjct: 1022 SQLHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFKIDRVLRHRVIQVHPCSALTCEGLESGVRWLVQEAKGLAR 1196          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: T0QBI1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QBI1_SAPDV)

HSP 1 Score: 206 bits (523), Expect = 1.440e-60
Identity = 98/190 (51.58%), Postives = 134/190 (70.53%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKI-TKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            MFSL+ G   YLFSK E+++LI+GLDYAGKTTLLEQ+KG+F K PGIP  KIPPTVGLN+ K+D+    + FWDLGGQ R+R++W KYY+++HG++FV+D+AD  RF+EAR A DT+    EL G+P+++LANK DL +A     IA    +  + +    R Q  S L+ DGVE+ +HW++   K   R
Sbjct:    1 MFSLLLGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKGRFGKKPGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEARFDEARSALDTMLANAELDGIPILLLANKNDLADAQDMGVIAECLGVASLPSHHEARAQSISALSMDGVEDAVHWLIGAVKNSDR 190          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A7S2WHH1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WHH1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.400e-60
Identity = 107/211 (50.71%), Postives = 142/211 (67.30%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPG-IPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQF-----DMHKITKVAF---------------------RLQPCSGLTCDGVEEGIHWIVDEA 625
            MFSL++G  ++LFSKTEI +LI+GLD+AGKTTLLEQMKG F+K    IP  KIPPTVGLN+G+MD+  C++ FWDLGGQ+ +RS+W+KYY++AHGLIFV+DSAD+ RFEEA+ A +++    EL GVPL++ ANKQDL  +    +I   F      + KI   A                      +LQP S LTC G+E+GI W+V+ A
Sbjct:    1 MFSLLSGFFKWLFSKTEIQILIIGLDHAGKTTLLEQMKGIFQKAANQIPLDKIPPTVGLNIGRMDIDNCRVIFWDLGGQIALRSIWDKYYSEAHGLIFVLDSADIDRFEEAKAAMESIASHPELAGVPLLVCANKQDLATSRGYDEINEYFRVVSESLGKIGSNADSEQNSMNASEHILSLGKRRERKLQPVSALTCSGIEDGIRWLVNAA 211          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A8J6CF14_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CF14_DIALT)

HSP 1 Score: 204 bits (519), Expect = 5.480e-60
Identity = 99/191 (51.83%), Postives = 137/191 (71.73%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKVA--FRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            MFSLIAGL  YLF K E  VLILG+D+AGKTT LEQMKG F+K+  + P KIPPTVGLN+G+M+VG  KL FWDLGGQ  +R +WEKY+A+ HGL++V+D+AD  RF+E+R  F+ + +  +L GVP+++LANKQDL  A +  +I  +F    +   +  +R++P S +T  G+ +GI W+VD  K  +R
Sbjct:    1 MFSLIAGLFEYLFKKAEFQVLILGVDHAGKTTALEQMKGLFQKIEPLAPEKIPPTVGLNIGRMEVGRVKLIFWDLGGQSGLRGIWEKYFAEVHGLVYVIDAADDQRFDESRRIFEALVKHPDLAGVPVLILANKQDLHSAATIDEIDERFGFGSLCAPSQQYRIEPVSAITGSGIADGITWMVDMLKLSSR 191          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A2R5GXN1_9STRA (ADP-ribosylation factor-related protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXN1_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.010e-58
Identity = 108/231 (46.75%), Postives = 140/231 (60.61%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPG-IPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDM------HKITKVAF------------------------------------------RLQPCSGLTCDGVEEGIHWIVD 619
            MFSL++G  ++LFSKTE+ +LI+GLD+AGKTTLLEQMKG F K    IP  KIPPTVGLN+G+MD+  C++ FWDLGGQ+ +RS+W+KYY++AHGLIFV+DSAD  RFEEA+ A +++ +  EL GVPL++ ANKQDLP A    DI   F +      H  +  A                                           RLQP S LTC G+E GI W++D
Sbjct:    1 MFSLLSGFFKWLFSKTEVQILIIGLDHAGKTTLLEQMKGIFHKSANQIPLDKIPPTVGLNIGRMDINNCRVIFWDLGGQIALRSIWDKYYSEAHGLIFVLDSADTDRFEEAKAAMESLVDHPELTGVPLLVCANKQDLPTAKEFEDIDAYFQITDDAAKHAASSAAKNSGSSHTSASNAEAGALLDVVDTHPLGIDSHHRSATGKRRERRLQPVSALTCSGIEVGIRWLID 231          
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Match: A0A484KDI7_9ASTE (Uncharacterized protein n=5 Tax=Convolvulaceae TaxID=4118 RepID=A0A484KDI7_9ASTE)

HSP 1 Score: 200 bits (508), Expect = 2.770e-58
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 2
Query:   74 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQFDMHKITKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRAR 640
            MFSL  GL +Y+FSKTE +VLILG+D AGKTTLLE++K +F  + G+PP +I PTVGLN+G+++V   KL FWDLGGQ  +RS+WEKYY +AH ++FVVD+A   RFE+A+ A + V    +LHG PL++LANKQDL EA S  ++    D+ K+ +  +++Q  S     G++E ++W+VD  ++  R
Sbjct:    1 MFSLFYGLWKYVFSKTEFHVLILGIDKAGKTTLLEKLKSQFLNIEGLPPDRIVPTVGLNIGRVEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVLFVVDAACPSRFEDAKSALEKVLRHEDLHGAPLLILANKQDLAEAASAEELDRYLDLKKLGERVYKIQAVSAYEGIGIKESVNWLVDAMERSKR 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig115.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPQ2_ECTSI1.800e-12797.40ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ec... [more]
A0A835YY21_9STRA3.420e-8266.14ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tr... [more]
A0A7S2BA16_9STRA5.610e-8261.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TPL1_9STRA1.130e-7761.581-family small gtpase n=1 Tax=Nannochloropsis gadi... [more]
A0A4D9CTS6_9STRA1.310e-6059.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
T0QBI1_SAPDV1.440e-6051.58Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2WHH1_9STRA3.400e-6050.71Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J6CF14_DIALT5.480e-6051.83Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2R5GXN1_9STRA1.010e-5846.75ADP-ribosylation factor-related protein 1 n=1 Tax=... [more]
A0A484KDI7_9ASTE2.770e-5849.74Uncharacterized protein n=5 Tax=Convolvulaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig115contigP-lacustris_contig115:111619..115457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue4.5e-103
Seed eggNOG ortholog2880.D8LPQ2
Preferred nameARFRP1
KEGG koko:K07952
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006892,GO:0006893,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0023052,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034613,GO:0034976,GO:0042147,GO:0042175,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048598,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098791,GO:0098876,GO:1990778
EggNOG free text desc.Golgi to plasma membrane protein transport
EggNOG OGsKOG0076@1,KOG0076@2759
Ec32 ortholog descriptionARFRP1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-18_002040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons7
Model size1420
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.916915-UTR-P-lacustris_contig115:111618..1123801622815456.916915-UTR-P-lacustris_contig115:111618..112380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 111619..112380 -
1693493550.4628344-UTR-P-lacustris_contig115:111618..1123801693493550.4628344-UTR-P-lacustris_contig115:111618..112380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 111619..112380 -
1622815457.0079153-UTR-P-lacustris_contig115:115384..1154571622815457.0079153-UTR-P-lacustris_contig115:115384..115457Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 115385..115457 -
1693493550.537594-UTR-P-lacustris_contig115:115384..1154571693493550.537594-UTR-P-lacustris_contig115:115384..115457Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig115 115385..115457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.930555-CDS-P-lacustris_contig115:112380..1124561622815456.930555-CDS-P-lacustris_contig115:112380..112456Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 112381..112456 -
1693493550.4740844-CDS-P-lacustris_contig115:112380..1124561693493550.4740844-CDS-P-lacustris_contig115:112380..112456Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 112381..112456 -
1622815456.941121-CDS-P-lacustris_contig115:112746..1129121622815456.941121-CDS-P-lacustris_contig115:112746..112912Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 112747..112912 -
1693493550.4832232-CDS-P-lacustris_contig115:112746..1129121693493550.4832232-CDS-P-lacustris_contig115:112746..112912Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 112747..112912 -
1622815456.9504874-CDS-P-lacustris_contig115:113197..1133061622815456.9504874-CDS-P-lacustris_contig115:113197..113306Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 113198..113306 -
1693493550.49256-CDS-P-lacustris_contig115:113197..1133061693493550.49256-CDS-P-lacustris_contig115:113197..113306Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 113198..113306 -
1622815456.9615445-CDS-P-lacustris_contig115:114404..1144601622815456.9615445-CDS-P-lacustris_contig115:114404..114460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 114405..114460 -
1693493550.5011263-CDS-P-lacustris_contig115:114404..1144601693493550.5011263-CDS-P-lacustris_contig115:114404..114460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 114405..114460 -
1622815456.9711363-CDS-P-lacustris_contig115:114686..1147711622815456.9711363-CDS-P-lacustris_contig115:114686..114771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 114687..114771 -
1693493550.5099008-CDS-P-lacustris_contig115:114686..1147711693493550.5099008-CDS-P-lacustris_contig115:114686..114771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 114687..114771 -
1622815456.9825017-CDS-P-lacustris_contig115:115134..1152241622815456.9825017-CDS-P-lacustris_contig115:115134..115224Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115135..115224 -
1693493550.5189557-CDS-P-lacustris_contig115:115134..1152241693493550.5189557-CDS-P-lacustris_contig115:115134..115224Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115135..115224 -
1622815456.9958866-CDS-P-lacustris_contig115:115381..1153841622815456.9958866-CDS-P-lacustris_contig115:115381..115384Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115382..115384 -
1693493550.5281756-CDS-P-lacustris_contig115:115381..1153841693493550.5281756-CDS-P-lacustris_contig115:115381..115384Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig115 115382..115384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig115.1156.1prot_P-lacustris_contig115.1156.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig115 112381..115384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig115.1156.1

>prot_P-lacustris_contig115.1156.1 ID=prot_P-lacustris_contig115.1156.1|Name=mRNA_P-lacustris_contig115.1156.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=195bp
MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGKFKKVPGIPPS
KIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVVD
SADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADIAVQF
DMHKITKVAFRLQPCSGLTCDGVEEGIHWIVDEAKKRARPRVGT*
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mRNA from alignment at P-lacustris_contig115:111619..115457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig115.1156.1 ID=mRNA_P-lacustris_contig115.1156.1|Name=mRNA_P-lacustris_contig115.1156.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3839bp|location=Sequence derived from alignment at P-lacustris_contig115:111619..115457- (Pleurocladia lacustris SAG_25_93)
AAACCAAACTGGGAGAGCGAGCGAGAGCGCGCGAGAGAGAGAGCTGCTGT TCTCAGCGAGACACACCAACTCAATGGTAAGATATGGAGAGCTATTGCTT TTGAGACTCAAACTGCTGGTGTTTAAAGCAGTCAAGAGCTCAAGAGCTCG AGATGTGTTCCACATATTCCACCGCATTTTATGAACCCCTTCCACTCTCT CGCGCCGCTCTCTCCTGCCACCACGCGTCCTAGTTCTCTCTCATTGCCGG CCTGATTCGGTATCTATTTTCCAAGACCGAGATCAACGTGCTCATCCTTG GACTGGACTACGCGGGTAAAACTGTGAGCTCCGTCTTTAGCATGCATGCA ATCTCCCTTCGCCGGCGGAACGAAGTCACTTGCCACTCTCGTGCGTGCTG GCACTGAAACAAGATCACTCAAGGGTTGGCGAAAAATATGTACTGAGAGC TGTGAAAACATCCTAGTTCTATCACCGCCAAGCCATGTTGAATGGGATGT TCGTCGGCGCCATCACGCTTGGATCCCTTCAGAAACGTAGTGTTCCATTG CTCGGTAAATGTACGAGATGCGAGGGTTCCTGTCCATGTCTCCATTGGTG CGTGCTTTGGCTTAAAGCTGCTGAAATAGTCTGCCGTTCATTTCCTAAGG GGACTTCTTGACTTCTTCCTGTCCCCAAACCGGCAGACACTGTTGGAACA AATGAAGGGGAAATTCAAGAAAGTGCCTGGGATACCACCTTCCAAGATTC CGCCAACGGTAGGATTGAACGGTGAGCTGTCCCAAATGTAGTTACCTCGG GAATGTTCCTACTTGCAACTCGACACTTGTGGATAGTTTGGATAGCTCGC TACACGGTCACTCACGCCTCGTTGAAAGCAATAAGTATCCTTCTTATAAG GGGGGTATTTGACCTCATACAACCATACCCTGCCTTCGTATCCATCCAGT CTATGTCATCCATGTCTTCCGTGTACACGTCGCGTGTGATTTGACAGTTG GCAAGATGGACGTTGGGGGCTGCAAGCTTACTTTCTGGGACTTGGGAGGG CAGGTAAGACTGACTTGGGGTAGCTAACATGACATAGTCGACACTCCATA TCCCGTAAAACTCCTTCGTCTACTCTTTGAATCAGTCAGCAGCAAGGGAA GGGATTTGCTGCTAGAAACCTACAGCGGTGTACACTTGAACTGTCCCACG TTCCGAACTACAAAATTGGAGAAGTCATGGTTGGATTATTGAAGTTGCAG ATACTTTGCTGCTTAGGTCGGTCAGGTACACACGTGTGCAAAGTCGAGAC CGGAAAACCAGTGACACACATAAGAGTTTACACATTAAGCAGCATACCAA AAAACAAATCGAGATTGGCGCCATCGTCTGATATATAATATAGGTGAGCA TTCGAGTGACCCTAATTTCTTGGAGACCGAGAGAAGCGATTTTCTCAATA TCAGCTGGATAGATTCGCGCCAAAGTATAGGGCAGGGCAGAGGTCCGCAC GAGGTACATGGCATCCAAATTTCGATCAAATTTGTAATAGGAATTTTGAG AAAACCTGGGCATCGTGAAACTAATAGGCTTCAAGAGTAGGGCTTCAGAG GCTTTCAGAGGTGGTTCCCTCCCGGACGGAGCGTAGCGAGTGGAGAGGCC GTGCTCATCGCCCATGGACTGTAAGTGTCGTCGAGGCACCGCCGCGACGG CGTGACAGTACGTCGCATGTGGCGAGAGGAAGTCGGAGGGGTCAAATGGT GGAACAGGTTCACTTGTTTTAAGGGTCTAGGCTCATCACAATGGTGGCCC CGAGGACGGAGCTCGGCGATAGAAGAGGCCGGGTCATGGTGGCGGATGAT CCTTGTGTGTGTGCGAAGGCCGCCGCGACTTGGTCGTTTGTAGGTTGCGT GTGTCGTGAGAGAAAATCGGTGGGGTCAACATCCTCATAGGGGGACGTTT CTAGCCGCAACAGACAGTGAAAACCCCTCTGATGAGGGGCTTCAGTGCAG GGTAATCAAGCAAGTAGGACGAAGACACCATGAGGGTGCTACTCAACTTT CCCCTAGAAAATGCGGCTCAATCGCAGTCCCTGAAGCCAACCATTTGCGT CAATGGGTCCCGAACTCCTCGCGCTTCCGCCGCGCCTCGCGTTCTCTACA GGTGCGCGTAAGATCACTGTGGGAAAAATATTACGCTGATGCGCACGGGT TGATCTTCGTCGTGGATTCTGCGGATGTCGGGAGGTTCGAGGAAGCCAGA ATGGCGTTCGGTGCGTGCCCCACGGCATCCAAAGTCTTCGGCTGCTTCTT GATGCAGTCGAGCGCAGTACTAGAATGCTGCTCTCTCAAGCTAGATTAAC CTGCAACAGCACGTGGCAGTAACGCATGTAGGCTGCCCGAGAAACTTTCA CGGCCGACTCTGCCAGTTTGTCGGTAGTTCTTTCAGATGATGATGTGGCA TCTCTGATACAAAGCCGTATTCCGTGTTGTTTGGTACCCTTCTACAAGCT GCCGTTGCTAACGATGCTGCATTGCTGGTATTGTTCCTATGGCAGATACC GTGAAGGAGCAAGGGGAGCTCCACGGGGTACCGCTAATGATGCTTGCAAA CAAGCAAGACTTGCCCGAGGCTATATCCACGGCGGATATTGCTGTACAGT TCGACATGCACAAAATCACGAAAGTGGCGTTTCGATTACAACCATGCAGC GGGCTTACATGGTGAGTGCGTCTCCTGTTACGTTGTTTCCCCCGTTCCTA TGCCTTATTTGCAAACATGCGACGGTACCTGAGATTGTCCATAGCCACAT GAAAAGTGTAGCACGAGGCTCGTGTTGTTGAGAGACACGACAAATGAAAG CATGGGCGTCCAAGGTTCAACTGCCAGATGATATTATATGTTAAATGTAG TGAACAAAGGACTGCTGGTGGCACATCCACGAGATCGACCCATCCCACTG ACCACATTTCCCTCGTGTATATGCCCGATGCCACCTGCCAACCGTTGCCA GTGACGGCGTAGAAGAGGGGATTCATTGGATAGTGGACGAGGCAAAAAAG CGAGCGCGACCACGAGTAGGTACATAGTACGTGGCCGGTCTGCTCTGGTT GGCTTGTTCGTGTGGGGATGAGCTGGAGGAGGCGCTTGGAGCGTAGCAGC TTCGTAGTATTAGTAACTTTTAAGACTTCTAGGGTTTTTGTTAATTTTTT TGGTCGGTGATCATGGAGGAGCACCGATCCTCCTTAACCGAAGTCGACCA CCTCTTTGCTTGGAAGAACACCTTGCGGTTTCGCAGGACCTGCTGAGACC TTGTTCCTCTTATGGCGAACTGGGGAGCATCTGGTGAAATTTGACTTCGT GCAAAGAGAGGCGCTCGGAACACAAAGCCGTGTCGGTCTGATGGCGACCT TCATCACATCACATACTTGTACAGCTGTCCTGTTTCATCTTAGAAACGTC TATTCCGCCCTACTTTGAACATTCGGCGGCGGTTTTTGTACATGCTTTCC CCTGGCGTCATCGGCCAACACCTCGGCATCCAGCGACCACGCAGCTTGTT TCGTTCAACCATGGCCAGACTTTGCAAAATTCAGCAATGGTATTGCTGTA GTTGGAGGAGGAACGCTAGATTCGTTGACCTTCCCTTGTTCCTCGAGAAG CGATGTCGTGCACGACGTTGGATGTATGTTCGTAAGACTTCCGGCGCATA CTCAAAACACGTTGCCGTCGGCACGGCGAGGAAATAATATTTGGTCTAGT TGTCGCCGTGAAGTGGTTAATCGTTCTTGGTTGCTCGACGTGCACAAGCA CTGCGTGTACCTTGAACTCCGTTGTAAAGTCTATGTAGC
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Coding sequence (CDS) from alignment at P-lacustris_contig115:111619..115457-

>mRNA_P-lacustris_contig115.1156.1 ID=mRNA_P-lacustris_contig115.1156.1|Name=mRNA_P-lacustris_contig115.1156.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1170bp|location=Sequence derived from alignment at P-lacustris_contig115:111619..115457- (Pleurocladia lacustris SAG_25_93)
ATGATGTTCTCTCTCATTGCCGGCCTGATTCGGTATCTATTTTCCAAGAC
CGAGATCAACGTGCTCATCCTTGGACTGGACTACGCGGGTAAAACTTTCT
CTCTCATTGCCGGCCTGATTCGGTATCTATTTTCCAAGACCGAGATCAAC
GTGCTCATCCTTGGACTGGACTACGCGGGTAAAACTACACTGTTGGAACA
AATGAAGGGGAAATTCAAGAAAGTGCCTGGGATACCACCTTCCAAGATTC
CGCCAACGGTAGGATTGAACGACACTGTTGGAACAAATGAAGGGGAAATT
CAAGAAAGTGCCTGGGATACCACCTTCCAAGATTCCGCCAACGGTAGGAT
TGAACGTTGGCAAGATGGACGTTGGGGGCTGCAAGCTTACTTTCTGGGAC
TTGGGAGGGCAGTTGGCAAGATGGACGTTGGGGGCTGCAAGCTTACTTTC
TGGGACTTGGGAGGGCAGGTGCGCGTAAGATCACTGTGGGAAAAATATTA
CGCTGATGCGCACGGGTTGATCTTCGTCGTGGATTCTGCGGATGTCGGGA
GGTTCGAGGAAGCCAGAATGGCGTTCGGTGCGCGTAAGATCACTGTGGGA
AAAATATTACGCTGATGCGCACGGGTTGATCTTCGTCGTGGATTCTGCGG
ATGTCGGGAGGTTCGAGGAAGCCAGAATGGCGTTCGATACCGTGAAGGAG
CAAGGGGAGCTCCACGGGGTACCGCTAATGATGCTTGCAAACAAGCAAGA
CTTGCCCGAGGCTATATCCACGGCGGATATTGCTGTACAGTTCGACATGC
ACAAAATCACGAAAGTGGCGTTTCGATTACAACCATGCAGCGGGCTTACA
TGATACCGTGAAGGAGCAAGGGGAGCTCCACGGGGTACCGCTAATGATGC
TTGCAAACAAGCAAGACTTGCCCGAGGCTATATCCACGGCGGATATTGCT
GTACAGTTCGACATGCACAAAATCACGAAAGTGGCGTTTCGATTACAACC
ATGCAGCGGGCTTACATGTGACGGCGTAGAAGAGGGGATTCATTGGATAG
TGGACGAGGCAAAAAAGCGAGCGCGACCACGAGTAGGTACATAGTGACGG
CGTAGAAGAGGGGATTCATTGGATAGTGGACGAGGCAAAAAAGCGAGCGC
GACCACGAGTAGGTACATAG
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