mRNA_P-lacustris_contig1146.1130.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1146.1130.1
Unique NamemRNA_P-lacustris_contig1146.1130.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1146.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1146contigP-lacustris_contig1146:39026..43246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size980
Cds size978
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1146.1130.1prot_P-lacustris_contig1146.1130.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1146 39026..43244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.2969604-CDS-P-lacustris_contig1146:39025..390841622815452.2969604-CDS-P-lacustris_contig1146:39025..39084Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 39026..39084 +
1693493547.631758-CDS-P-lacustris_contig1146:39025..390841693493547.631758-CDS-P-lacustris_contig1146:39025..39084Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 39026..39084 +
1622815452.3079953-CDS-P-lacustris_contig1146:39484..395601622815452.3079953-CDS-P-lacustris_contig1146:39484..39560Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 39485..39560 +
1693493547.6398883-CDS-P-lacustris_contig1146:39484..395601693493547.6398883-CDS-P-lacustris_contig1146:39484..39560Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 39485..39560 +
1622815452.3203816-CDS-P-lacustris_contig1146:40768..408011622815452.3203816-CDS-P-lacustris_contig1146:40768..40801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 40769..40801 +
1693493547.652212-CDS-P-lacustris_contig1146:40768..408011693493547.652212-CDS-P-lacustris_contig1146:40768..40801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 40769..40801 +
1622815452.330877-CDS-P-lacustris_contig1146:41494..416051622815452.330877-CDS-P-lacustris_contig1146:41494..41605Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 41495..41605 +
1693493547.6618738-CDS-P-lacustris_contig1146:41494..416051693493547.6618738-CDS-P-lacustris_contig1146:41494..41605Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 41495..41605 +
1622815452.340835-CDS-P-lacustris_contig1146:42545..432441622815452.340835-CDS-P-lacustris_contig1146:42545..43244Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 42546..43244 +
1693493547.669224-CDS-P-lacustris_contig1146:42545..432441693493547.669224-CDS-P-lacustris_contig1146:42545..43244Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 42546..43244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1146.1130.1

>prot_P-lacustris_contig1146.1130.1 ID=prot_P-lacustris_contig1146.1130.1|Name=mRNA_P-lacustris_contig1146.1130.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=326bp
ERVTREGEGEGEKWGDAKNRLEAAAAMWKTKAEMYLRSYRTLMQQALAAH
QKNLVQRVENISLRSEREQMELRIAAVAEELRDRNEELAEVSAELTTIKA
LCARNHRQQQQQYQHARQQQHQPRQEQRCSAPPSPSFASSPLTGPPVSPR
QRLQRQGRRLRPPRPAETATPSTATAPTTRGSRTATTPPAQVGPTPPPPP
PPPQLRNPPSAGGFSSLSLLAEQEAAAWAAAGRQRRQARPEKARIRPRAA
SATATIFEPMTPPDTASPGTGKQVAAGSAAAAFGLTPASASHVGGPEDST
WGAGAGGDDWKRRGVGWCRTGAVWRT
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mRNA from alignment at P-lacustris_contig1146:39026..43246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1146.1130.1 ID=mRNA_P-lacustris_contig1146.1130.1|Name=mRNA_P-lacustris_contig1146.1130.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4221bp|location=Sequence derived from alignment at P-lacustris_contig1146:39026..43246+ (Pleurocladia lacustris SAG_25_93)
GAGAGAGTTACGCGGGAGGGCGAGGGCGAGGGCGAAAAGTGGGGCGATGC
GAAGAACAGGTGATGAGGTGATGGGTTCTGGCCGAACATTGCTGACAGCC
CTACAGACTTCCCTCGTTCTGCGTGGCAAGGTGTACGAGCACCTTTGCCG
TCGGTATGGCAAGGTTGTCCGTGGACCTAGATTGTGCTGGGTTAGATTGG
ACCAGCTCTTGATCGCATCTTGTGCTGCTGGGTGCTGATGGTCTCACTTG
ATCTGCACAGACACCCGTGTCGCAAGCTTTCCAGAGGAAGACATTAACAC
TTATTTCACTCTCTCTCCCAGGTGAGTCTCCGTGGTAGCCTTCGTTTTTC
TGACCCTCCTCATCGCCGCGACCGTCTCCCGCTTGCCGGCGTGGCTCTTC
CCACGGGTGCGACGTGTTCTGATCGATTCACGTGTTTGATTGTCAATACA
ATGGGACAGGCTGGAGGCAGCGGCGGCCATGTGGAAAACGAAGGCAGAGA
TGTACCTCCGGAGCTACCGCACCCTGATGCAGCAGGCGGGTTGTTCGCGG
TTGGTTGGGTGGTGCCTCACTTCAACGAAATGCTTCTCCTCCTGGATCGA
ATCTGATATGTCTTTCTTGCGATCGTGACGCTCGTTCGATGACTTGAGCG
CTCTCAATTGGAGGCTCTTCCTCCCACCCTTGTTGCTGTTGCACTGCTAG
TCAACATTTTTTCGGGGGTGACAGCACCACTCCTTTCTATGATAGAAATA
AGTGTTCGCTTCGTCTGGCGCTCGTCTTCTCGTGCGTAGATACGTTCCCG
ACTCTTTTCCCTGTACGGTGCATTGCAGCCATGCGCACAGTAGTGGTGCA
AGAGTGGCGACGGTGCTATCATTCGGGTCGTCTACGCGAGAGTTCACGCC
CACGCTATACATCACATGATATGTTTTGCGCGACCGTCGCCATGCAATCA
GGGCCTATTACGTACGGTGCACTTTTTAGCGAGCAGCCGTGACGATGCCC
AAGCCCGTTATGACTACCTTCATTTTACATTACGGTGCTTGGCGGGTGAA
AAAAAACGGGTTGGTTTGTGTGCGTGAACTGACAGCGCTGTCATGAGCGT
GGCTCTGCCTGAGCCGTCCTCCAGCAAGCCGGTGCTATCGATTGCTGTGA
TAACGTGGGTCTTTCTATTTTATTGGCTAGCATTGTCTGCGCAAACCAGC
TGACCAATGAAAATACGTCAGCGGCAGCGGGCACAAATTCAAGTCCCGAG
CGAGGACCACAACTCAAAATCGACAGGCGATGCCTGCAATATGCAAAACC
TATCTCTCTACAACGTGTGTGTCTGCGTAAGTTTGTGTGCAATGTGTCCG
CTGATTTGTGTGTGGGACCCAGACCGGGCCAGTCGGCTTCCCAGTAAGAA
TGGCAACGGCCCTAGGCGAACGGCAACCAAAACCGAGCGACCTCGTCCAC
CATTTGTCCCAACAATTCGCAATTCGACGAGGTTTCGCTCGCTTATTTCT
CGACGATGTCATCGACGACGTCGTGTCCTGTGGATGAAAGCAACTGTCAA
CAGTCCAAATCACAGCGGCAGCCCCCCCCTCTCACCTCCGCCTGCCATGG
GTTTCCCCTGCTCTCCTTTGTCGTGGTGGCGCGTCGTCTGCTTCGCTGCG
TGCACTCGCGACGACGACGGCGGGACCCCCTTTGTTGCTACTCCTGTGGT
TGCTTCTGTGGTGGTGTTGCGCTCTCTACCACCTCTCGGCCAGGCTCTAG
CTGCGCACCAGAAAAACCTGGTGCAGGTGAGCGAACCAGTTGTAGGTGTG
TGCCAACAAACACAGCTAGCTTCCCGCAGCCACGATGCTGTTGGCGCCCG
GTAGCACGAAGGGGTTTCGGAGGAGTATGTTTAGACCGAAGAGAAGTTAC
ACGTGCGTTTATGGGTGGGGCGGGAATGAGCAGGAGTCGAACCCGTGTAC
TGCCGAATCTGAACCGTTTGGTGGCGAGAAGCATTTTGCAGCTGCTGTAC
ACGATGCGGACGTGGGGAGGGCGAAAAGGTAGCACGAGCATCAGCTGGCT
GCCTTTCCGACTCCACTTTCTCAGTCTCGTCGAAACATTGACACGTTGAT
GGTTGCTTGGAGCATGCGAGCGATGGAGCAGCGTTCGAACCGCACCTTTC
AACAGCGGCAGTTGCTGGCACGCAGCAGCTGCTTATTGTCAAAACCAGCC
TCCTTTGCCGCAGAGCTTCAGATGATCGGCCCGGCTGCGGGTAGTCAACG
CGTCAGCGTGGTCGATTCAAAAGTTTTGCAAGACTTCGACCAAGTATTTT
TTCGGCTCGGGTTGTTTCGATGGCCATCCCAACCCACGGAATAGTGGCCG
ACGTGCCGTAGGTGAAGCGTGGTCAACCGACAGAAGGGAAATCTGTCACC
AAAATTCTGACCCGCGATGGCCAACTTGTCGAATCGTCCCTCTGTCTGCT
CCCCGACGGACAATAAAAGAGAGTGGAGAACATCTCGCTGCGGAGCGAGC
GCGAGCAGATGGAGTTGCGAATCGCCGCCGTCGCCGAGGAGTTGCGCGAC
AGGAACGAAGAGTTAGCCGAGGTCAGCGCGGTGAGATCTCGTCGGCAGAA
CGTCGTTTGCCCGCTTTTTTTCTTCTTTTTTTTCCGGTCAGTTTTTTTCC
TTGTGCTTGTTTTTTGTTTTTTGCTCATTCGGTTTCTGGGATTCTCTTCC
CTCTTTTTTCTCTTTTGTTCTTGGAGTTTTGCACGAGTCCGGAAGGTTTC
CCGAGACAGCAACAGGAGCTCCATGTCAGAGTCAGCCGGAGCCGGTGTAT
CGTACTCTCTCGCAGCTTCGAGCTCAGGTTACAGCATGGCTTTTTTCTTC
ATGCCCTTTCCTGCACTAAATATCCGCCACCAGCCTCCGAGCTTTTGTAC
ACCGTGTTGTTGATTGTCGCCCGCGATGTTGGTGAGGCTATGCATAACCT
ACTGGCCCGCGAATTTCGGTAACGGCTTGGCGCAACTTCCGGCAGTGGTC
GTTTCTTGTTTTTTGTTTCATTGCCTCTGCCTTTCGGACCATGTACACTA
GAGACCAGCAACAACATCAATGACTCAGGGCGTCATTCTGTGTCTTGGCC
ACCGCCACAACGCTCCTTCGCAGAAACGACATTGTGGGTTGCGCTTTGCC
ACCACCGCGTAGCCCCCTAAAGCGTGCAGCCTCGCCGTTGTGAAGAGCGA
CTCCCCGTTCCATTTCGCGGGAAAAGTTAGCAACGCGCTTTTTGTCCAAC
TCCGTCGACATGTCGATCTCGATCCTCGTTCAGTTGCGCACGTGTTCAGC
TGATCCCAACGTTGTAGATCTTATATGCCTTTGTGCAAGGGCTTGCACAC
AGAACCAGGTGTCCTTGTCCCGTCACAGAACCAGGTGTCCTGGTCCCGTA
GGAACCAGGTGTCCTGGTCCCGTAGCTTTGGAGGCACGTATTCTCCCTCC
ATTGCACCAAATTATCCTCTCACTCTCCCGTCATGCCCGGCCGCTCTCCT
GGACACAACATCCTCCATAGGAGCTCACAACGATTAAGGCTTTATGTGCT
CGAAATCATCGGCAGCAGCAGCAGCAGTATCAACACGCGAGACAGCAGCA
GCACCAGCCGCGGCAGGAGCAGCGGTGTTCGGCTCCTCCGAGTCCCTCTT
TCGCGTCTTCTCCTCTGACGGGCCCGCCGGTGTCCCCCCGTCAACGACTA
CAACGCCAAGGGCGGCGGCTAAGACCACCGCGACCCGCGGAGACAGCGAC
GCCGTCAACGGCGACAGCACCAACGACGCGAGGCAGCAGAACAGCAACAA
CGCCGCCTGCACAAGTCGGGCCGACTCCGCCGCCGCCGCCGCCGCCGCCA
CAGCTACGCAACCCCCCGTCCGCCGGGGGGTTTTCGTCTCTATCATTGTT
GGCGGAGCAAGAGGCAGCAGCGTGGGCGGCGGCGGGACGACAGAGACGGC
AAGCACGACCGGAGAAAGCAAGAATCCGGCCAAGGGCAGCATCAGCAACG
GCAACGATATTTGAACCGATGACGCCACCGGACACCGCTTCGCCGGGGAC
GGGGAAACAAGTGGCGGCGGGGTCGGCGGCGGCGGCTTTTGGGTTGACCC
CGGCTTCAGCTTCACACGTGGGAGGTCCAGAAGACAGCACCTGGGGTGCC
GGGGCAGGCGGGGACGATTGGAAAAGGCGGGGCGTGGGGTGGTGTCGAAC
GGGGGCGGTATGGAGGACGGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1146:39026..43246+

>mRNA_P-lacustris_contig1146.1130.1 ID=mRNA_P-lacustris_contig1146.1130.1|Name=mRNA_P-lacustris_contig1146.1130.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1956bp|location=Sequence derived from alignment at P-lacustris_contig1146:39026..43246+ (Pleurocladia lacustris SAG_25_93)
GAGAGAGTTACGCGGGAGGGCGAGGGCGAGGGCGAAAAGTGGGGCGATGC
GAAGAACAGGAGAGAGTTACGCGGGAGGGCGAGGGCGAGGGCGAAAAGTG
GGGCGATGCGAAGAACAGGCTGGAGGCAGCGGCGGCCATGTGGAAAACGA
AGGCAGAGATGTACCTCCGGAGCTACCGCACCCTGATGCAGCAGGCTGGA
GGCAGCGGCGGCCATGTGGAAAACGAAGGCAGAGATGTACCTCCGGAGCT
ACCGCACCCTGATGCAGCAGGCTCTAGCTGCGCACCAGAAAAACCTGGTG
CAGGCTCTAGCTGCGCACCAGAAAAACCTGGTGCAGAGAGTGGAGAACAT
CTCGCTGCGGAGCGAGCGCGAGCAGATGGAGTTGCGAATCGCCGCCGTCG
CCGAGGAGTTGCGCGACAGGAACGAAGAGTTAGCCGAGGTCAGCGCGAGA
GTGGAGAACATCTCGCTGCGGAGCGAGCGCGAGCAGATGGAGTTGCGAAT
CGCCGCCGTCGCCGAGGAGTTGCGCGACAGGAACGAAGAGTTAGCCGAGG
TCAGCGCGGAGCTCACAACGATTAAGGCTTTATGTGCTCGAAATCATCGG
CAGCAGCAGCAGCAGTATCAACACGCGAGACAGCAGCAGCACCAGCCGCG
GCAGGAGCAGCGGTGTTCGGCTCCTCCGAGTCCCTCTTTCGCGTCTTCTC
CTCTGACGGGCCCGCCGGTGTCCCCCCGTCAACGACTACAACGCCAAGGG
CGGCGGCTAAGACCACCGCGACCCGCGGAGACAGCGACGCCGTCAACGGC
GACAGCACCAACGACGCGAGGCAGCAGAACAGCAACAACGCCGCCTGCAC
AAGTCGGGCCGACTCCGCCGCCGCCGCCGCCGCCGCCACAGCTACGCAAC
CCCCCGTCCGCCGGGGGGTTTTCGTCTCTATCATTGTTGGCGGAGCAAGA
GGCAGCAGCGTGGGCGGCGGCGGGACGACAGAGACGGCAAGCACGACCGG
AGAAAGCAAGAATCCGGCCAAGGGCAGCATCAGCAACGGCAACGATATTT
GAACCGATGACGCCACCGGACACCGCTTCGCCGGGGACGGGGAAACAAGT
GGCGGCGGGGTCGGCGGCGGCGGCTTTTGGGTTGACCCCGGCTTCAGCTT
CACACGTGGGAGGTCCAGAAGACAGCACCTGGGGTGCCGGGGCAGGCGGG
GACGATTGGAAAAGGCGGGGCGTGGGGTGGTGTCGAACGGGGGCGGTATG
GAGGACGGAGCTCACAACGATTAAGGCTTTATGTGCTCGAAATCATCGGC
AGCAGCAGCAGCAGTATCAACACGCGAGACAGCAGCAGCACCAGCCGCGG
CAGGAGCAGCGGTGTTCGGCTCCTCCGAGTCCCTCTTTCGCGTCTTCTCC
TCTGACGGGCCCGCCGGTGTCCCCCCGTCAACGACTACAACGCCAAGGGC
GGCGGCTAAGACCACCGCGACCCGCGGAGACAGCGACGCCGTCAACGGCG
ACAGCACCAACGACGCGAGGCAGCAGAACAGCAACAACGCCGCCTGCACA
AGTCGGGCCGACTCCGCCGCCGCCGCCGCCGCCGCCACAGCTACGCAACC
CCCCGTCCGCCGGGGGGTTTTCGTCTCTATCATTGTTGGCGGAGCAAGAG
GCAGCAGCGTGGGCGGCGGCGGGACGACAGAGACGGCAAGCACGACCGGA
GAAAGCAAGAATCCGGCCAAGGGCAGCATCAGCAACGGCAACGATATTTG
AACCGATGACGCCACCGGACACCGCTTCGCCGGGGACGGGGAAACAAGTG
GCGGCGGGGTCGGCGGCGGCGGCTTTTGGGTTGACCCCGGCTTCAGCTTC
ACACGTGGGAGGTCCAGAAGACAGCACCTGGGGTGCCGGGGCAGGCGGGG
ACGATTGGAAAAGGCGGGGCGTGGGGTGGTGTCGAACGGGGGCGGTATGG
AGGACG
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