mRNA_P-lacustris_contig1146.1129.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1146.1129.1
Unique NamemRNA_P-lacustris_contig1146.1129.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1146.1129.1 vs. uniprot
Match: A0A6H5L3Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.960e-16
Identity = 70/174 (40.23%), Postives = 86/174 (49.43%), Query Frame = 3 
Query:  417 MSDDERGNPGGLTLGDAAAARLGSPVVRALPVETIGDYRREALNTRVYEPTEAAVTMMERNLALHMEAVAASAQQLQQQQLSGNSSHGGVSAGSFSDDHPRARGQRSARERELYRTHRLYLLEQRXXXXXXXXXXXXXXXQRVLDRT-----------ALLRLLNGGLPRAASP 905
            M    RG+     + +AAAAR  SP V  LP ET   Y RE L+ RVYEP EAAV ++ER LAL+   +A SA+   QQQ   N   G  SAG F   H RA  ++SA+ RELY        + R                RVLD +           AL+RLLNGGL +  SP
Sbjct:    1 MMGGPRGDIDHAAVAEAAAARSSSPGVPGLPWETFAGYSRETLSMRVYEPKEAAVAILERQLALNRREIA-SARASTQQQPGSNDVLGSASAGGFPGGHTRATEEKSAQARELYSQEEQESQQPR---------------NRVLDGSXXXXXXXXXXAALVRLLNGGLSQLGSP 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1146.1129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Q1_9PHAE2.960e-1640.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1146contigP-lacustris_contig1146:35773..38908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size905
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1146.1129.1prot_P-lacustris_contig1146.1129.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1146 36189..38908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.220459-UTR-P-lacustris_contig1146:35772..361881622815452.220459-UTR-P-lacustris_contig1146:35772..36188Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1146 35773..36188 +
1693493547.5905678-UTR-P-lacustris_contig1146:35772..361881693493547.5905678-UTR-P-lacustris_contig1146:35772..36188Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1146 35773..36188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.2369602-CDS-P-lacustris_contig1146:36188..363071622815452.2369602-CDS-P-lacustris_contig1146:36188..36307Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 36189..36307 +
1693493547.6036808-CDS-P-lacustris_contig1146:36188..363071693493547.6036808-CDS-P-lacustris_contig1146:36188..36307Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 36189..36307 +
1622815452.2502964-CDS-P-lacustris_contig1146:38224..384491622815452.2502964-CDS-P-lacustris_contig1146:38224..38449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 38225..38449 +
1693493547.6143923-CDS-P-lacustris_contig1146:38224..384491693493547.6143923-CDS-P-lacustris_contig1146:38224..38449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 38225..38449 +
1622815452.2646642-CDS-P-lacustris_contig1146:38763..389081622815452.2646642-CDS-P-lacustris_contig1146:38763..38908Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 38764..38908 +
1693493547.624012-CDS-P-lacustris_contig1146:38763..389081693493547.624012-CDS-P-lacustris_contig1146:38763..38908Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1146 38764..38908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1146.1129.1

>prot_P-lacustris_contig1146.1129.1 ID=prot_P-lacustris_contig1146.1129.1|Name=mRNA_P-lacustris_contig1146.1129.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=163bp
MSDDERGNPGGLTLGDAAAARLGSPVVRALPVETIGDYRREALNTRVYEP
TEAAVTMMERNLALHMEAVAASAQQLQQQQLSGNSSHGGVSAGSFSDDHP
RARGQRSARERELYRTHRLYLLEQRQRRQELSPQQPQQPQQRVLDRTALL
RLLNGGLPRAASP
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mRNA from alignment at P-lacustris_contig1146:35773..38908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1146.1129.1 ID=mRNA_P-lacustris_contig1146.1129.1|Name=mRNA_P-lacustris_contig1146.1129.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3136bp|location=Sequence derived from alignment at P-lacustris_contig1146:35773..38908+ (Pleurocladia lacustris SAG_25_93)
GTTGTGTTGACTCACGAATAAAATATAAAAAATCTCGTGTGGCACCCAGC
AGGTGGCACGTTTAATTCGACGAAGATTACCTGTATGTATGGCCATCGCC
TCACACCACACACAGGGCTAACTGTTCTGAATGCGGCGGGATTTCTCTCC
ACTGTTCAAACCAGGTCTCCTCCTTGCGGTCACCGCTACGTCTGGCGATC
GGGTCTTATTGCTAAGCAGCTTGCCTGGCACGTGGCGTGCTCTCATTTTG
AGGTCAGCGAACAATCTCATTCGCTTTCGAGGACACTCCGCACGCCGAAG
CTTACAGGAGCGCTTCTCTTCAGCCAGTCACACACCAAGGAATCACGGAG
ATTAGACTACTATATTTTTGGAAAATAGCGACCACACGACAGACTAAGGG
GAGCAGCTGCCTGATCATGAGCGACGACGAGCGTGGGAATCCTGGTGGTC
TTACTCTTGGGGATGCAGCCGCAGCGCGCTTGGGTTCTCCTGTGGTACGA
GCGCTGCCTGTGGAGACTATCGGGGATTACCGGAGGTGATGAAAATTGAG
CGCGTGTTTGCGTGTTTAGTCCAAAGCGAGTATAGCTGCTTGCGGTGCAT
GAGCTACGCGCCTCTCCAGTGTTTCCTTTGCCCTCTATGCAGAACTTCAT
GTTTCGGCCTGATGCGCCGGTCTGCAGCGTAGCAGCCGGTGTTGCGTTGT
TTATAGTCAGCAGGTTGACACAGCAACCAAGAACTACAGCCCCGAGGCAC
ATCTCGGGAAGACTCGGAATTCACCGGGATGTACGCCCTTCGAAGTCCTC
CCCTCCACATCTAAATTACTAGTCTACAGCATCTTCAGGTTGGAGTCGGA
GAGGGAGTTCTTAAGAGCAGATTCCGCTGCGGTGTCAGCTCTTGACATAC
AGCGCGCACCAGTCTGTAGGAACCGCCGCTAGGTGCATCGGCGCGTCGGC
AGAGCACAACCGTGACGAAGCTACGTTTCATGGAGCTCTGCAGCTGCTTA
GCTACGTTTCCTGGAGCTCTGCAGCAGCCAGTTCGTGAATACTGAATACT
CCGTATTCAATAGAGCTCCCACCGAGCAGCACACAACAACCCGACCCGAC
CCAACCCTAACCCTGAACCTCAAGATCGGCCAAAGTCGGGCTACGGCGGC
CATAAAGCGGGCTGAACGCGGGCATCCAGCCTTCGGCGTTACATGGTGCG
GAGGATAGCACGTTCGACGATTCTGAGGCGCAAATGACCTACAATGACAG
CAGTAGTGGATCTTTCATCTCCTTTTCATCCCATCTATTCTGGACGCTAT
TTCCTTTCTTCGATTGTAGGGTTAGTACCCAGCCAGGGTCACACCGAAGG
ATTCCTCTCCCTGAGGCCCCCGACCCGCCCTCCTGCGGTACTTACCTTGA
GTTTTGTCGCGAGAAAGGTTCAGCCGTCCCCTTTTCCTAGTCTCAAAAAG
TCGATTTTTTTACTCACGAATTAATCGCTCCACCGCAAAGTTGGGAAAAA
GAACGACCCCCACCCACATACCATAGATCTACTTATACCTTGCAACGCGT
ACGGTTCTCAGTAGTTGCTGATTTTCTTAGCGAGGAGAGATGAGCCAAGC
CGAAGCTCAATGAGTCGAACACCTAGCTCCCAAGCACGATGACAAGTCTG
GAGAACAAGCCAAAGCGTAGCACGCTCCCCAGCCCAGCGCGCTTATATTT
GGCGGCGTTGCCCATTCGAATTTGCCTCTCTTTCTCGTTATTGTGCAACA
TCCTATCTTTCTATGCAATTGTCTCACCGCCCCAAAAACACTCTCCCCCA
CACGTGTTTTGCTGACGTGTTCTGCAACCACGCACCCACTCATCAGAGTC
GGCACTGTCTCACACTCCTTACCTTGACTCTTCCACATTTCCCAATCGAT
GTGGCTGAGAATTGTACCGCCTCGTCAACCGTGAACGAGGTTGCCGTGAT
TGGAGCCAAACGTTTCAACCTTGTCCTGACCTATTTCGCGTGAGGTTGTT
GGTAAGGGTAAGCCTTGCGAAAAATCGCGAGGCTTTCGATTGTTCGCAAG
GCTTACCCTCATCGACAGCCTTACGCGGACCATGTCATGACAGGGTTGGT
GCTTTTGGCTCCAATGACGCAATCACGGGATCCTCGTTCACGGTAAACGA
GACGGTACAGTTCTCAACAACACCGAATGAGAAAGTGGAAGACGAGGGAA
GGAGTGGGAAGGAGTGGGAGATAATTCCGACTCTGATGAGCGGGTGCAAC
ATACATGGAACTACGGAGGGCTCTATTTGCGCCGCGACCGCAAAGACATT
CTCGGGATGTTTCAATCAACCCTCCGCAACTGTCAGCCCCCATCGCCTCT
CTCACCCCGCCTCAAGGTAGTCTTGGGGGCATTTCTCACTCGCGTATCGC
GCGTTCTTTTGCTGCACGCCCGTCGCCCCCAAAACAAAACAAAACAAAAA
AGGGAGGCCTTGAACACGAGGGTGTACGAACCTACGGAGGCGGCCGTGAC
GATGATGGAACGCAACCTAGCGCTGCACATGGAGGCTGTAGCCGCGTCGG
CGCAGCAGCTGCAACAGCAGCAGCTTAGCGGCAACAGCAGTCACGGAGGC
GTATCGGCGGGAAGTTTTTCTGACGACCACCCAAGAGCACGGGGGCAGCG
ATCGGCAAGGGAGCGGGAGTTGTATAGGTATTTTGATGTTCATATCGTAG
CTCCTTAGCAAGCAGAAGGGGCAAAGAAGGTCGCACCGTGACGAGCGACG
TATGATAAAGGTCAACCAACTGCAAGCCGTGTTGAGTGCCCCCCTTCCCC
GTGCCTTCTGGACTATCACCCTTTGTTTCCACGAGTTTCCACGGGTTTCC
ATGGAATTTTTCCACAATGTTTCCACGAGCTTCCATGGAAACCCGTGGAA
GCTCGTGGAAACAAAGGGCGATAGTGGAGCAGAcccCCCTCCCCCCTCCG
CTCGCTTccCCTCCCTCTCTTTGTCTCTCGTTTTTGGATAGGACCCACCG
GCTGTACCTGCTTGAACAACGGCAACGACGACAAGAGCTTTCGCCGCAGC
AGCCGCAACAGCCGCAACAACGAGTTCTCGACCGAACGGCTCTGCTCCGG
CTACTCAATGGCGGCCTTCCGCGAGCAGCATCGCCG
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Coding sequence (CDS) from alignment at P-lacustris_contig1146:35773..38908+

>mRNA_P-lacustris_contig1146.1129.1 ID=mRNA_P-lacustris_contig1146.1129.1|Name=mRNA_P-lacustris_contig1146.1129.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=978bp|location=Sequence derived from alignment at P-lacustris_contig1146:35773..38908+ (Pleurocladia lacustris SAG_25_93)
ATGAGCGACGACGAGCGTGGGAATCCTGGTGGTCTTACTCTTGGGGATGC
AGCCGCAGCGCGCTTGGGTTCTCCTGTGGTACGAGCGCTGCCTGTGGAGA
CTATCGGGGATTACCGGAGATGAGCGACGACGAGCGTGGGAATCCTGGTG
GTCTTACTCTTGGGGATGCAGCCGCAGCGCGCTTGGGTTCTCCTGTGGTA
CGAGCGCTGCCTGTGGAGACTATCGGGGATTACCGGAGGGAGGCCTTGAA
CACGAGGGTGTACGAACCTACGGAGGCGGCCGTGACGATGATGGAACGCA
ACCTAGCGCTGCACATGGAGGCTGTAGCCGCGTCGGCGCAGCAGCTGCAA
CAGCAGCAGCTTAGCGGCAACAGCAGTCACGGAGGCGTATCGGCGGGAAG
TTTTTCTGACGACCACCCAAGAGCACGGGGGCAGCGATCGGCAAGGGAGC
GGGAGTTGTATAGGGAGGCCTTGAACACGAGGGTGTACGAACCTACGGAG
GCGGCCGTGACGATGATGGAACGCAACCTAGCGCTGCACATGGAGGCTGT
AGCCGCGTCGGCGCAGCAGCTGCAACAGCAGCAGCTTAGCGGCAACAGCA
GTCACGGAGGCGTATCGGCGGGAAGTTTTTCTGACGACCACCCAAGAGCA
CGGGGGCAGCGATCGGCAAGGGAGCGGGAGTTGTATAGGACCCACCGGCT
GTACCTGCTTGAACAACGGCAACGACGACAAGAGCTTTCGCCGCAGCAGC
CGCAACAGCCGCAACAACGAGTTCTCGACCGAACGGCTCTGCTCCGGCTA
CTCAATGGCGGCCTTCCGCGAGCAGCATCGCCGGACCCACCGGCTGTACC
TGCTTGAACAACGGCAACGACGACAAGAGCTTTCGCCGCAGCAGCCGCAA
CAGCCGCAACAACGAGTTCTCGACCGAACGGCTCTGCTCCGGCTACTCAA
TGGCGGCCTTCCGCGAGCAGCATCGCCG
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