mRNA_P-lacustris_contig114.1108.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig114.1108.1
Unique NamemRNA_P-lacustris_contig114.1108.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig114.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig114contigP-lacustris_contig114:176190..177269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size532
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig114.1108.1prot_P-lacustris_contig114.1108.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig114 176269..177269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.6278303-UTR-P-lacustris_contig114:176189..1762681622815445.6278303-UTR-P-lacustris_contig114:176189..176268Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig114 176190..176268 -
1693493544.3927677-UTR-P-lacustris_contig114:176189..1762681693493544.3927677-UTR-P-lacustris_contig114:176189..176268Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig114 176190..176268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.6379738-CDS-P-lacustris_contig114:176268..1762721622815445.6379738-CDS-P-lacustris_contig114:176268..176272Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176269..176272 -
1693493544.4018135-CDS-P-lacustris_contig114:176268..1762721693493544.4018135-CDS-P-lacustris_contig114:176268..176272Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176269..176272 -
1622815445.6491208-CDS-P-lacustris_contig114:176780..1769371622815445.6491208-CDS-P-lacustris_contig114:176780..176937Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176781..176937 -
1693493544.4097369-CDS-P-lacustris_contig114:176780..1769371693493544.4097369-CDS-P-lacustris_contig114:176780..176937Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176781..176937 -
1622815445.6598516-CDS-P-lacustris_contig114:176977..1772691622815445.6598516-CDS-P-lacustris_contig114:176977..177269Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176978..177269 -
1693493544.4176898-CDS-P-lacustris_contig114:176977..1772691693493544.4176898-CDS-P-lacustris_contig114:176977..177269Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 176978..177269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig114.1108.1

>prot_P-lacustris_contig114.1108.1 ID=prot_P-lacustris_contig114.1108.1|Name=mRNA_P-lacustris_contig114.1108.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=151bp
PGRSDSGAQSSPRSGDTSDGRGRGRGGGRTANPRAGKSRRRRASDKEERT
PSQGSRPKEEERKSTRTRRREDSPQRNTGSNPDRSTRRREDSPRRSETRC
RVGADFGVGTGRGGGPALGLGGGGCEIFGFGWRECLRVGRRRGFSYISTR
*
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mRNA from alignment at P-lacustris_contig114:176190..177269-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig114.1108.1 ID=mRNA_P-lacustris_contig114.1108.1|Name=mRNA_P-lacustris_contig114.1108.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1080bp|location=Sequence derived from alignment at P-lacustris_contig114:176190..177269- (Pleurocladia lacustris SAG_25_93)
CCGGGCCGCTCCGACTCCGGCGCCCAGTCCTCGCCGCGCAGCGGGGACAC
CAGTGACGGCCGCGGAAGAGGGCGAGGGGGAGGGCGAACGGCCAATCCGC
GCGCGGGGAAGAGCAGGAGGAGGCGTGCGTCCGACAAGGAGGAGCGGACG
CCCAGCCAGGGTTCGCGCCCGAAGGAGGAGGAGCGGAAGTCCACCCGCAC
CCGACGCCGCGAGGACTCGCCGCAGCGCAACACCGGCAGCAATCCGGACC
GCAGCACCAGACGGAGGGAGGACTCGCCGCGGCGTTCGGAGAGCCGAACT
AGGAGCCCTGTTCGGAAGGAGGCGTCTCCCAGCCCGCTGTCGCGTCGGAG
CAGACTTCGGCGTAGGGACCGGCCGAGGAGGAGGGCCAGCCCTCGGACTC
GGAGGTGGAGGATGCGAAATCTTCGGCTTCGGATGGCGGGAGTGCCTCCG
CGTCGGGAGAAGGAGAGGCTTCTCCTACATCAGTACACGGTGAGACGATG
TCCAGACTGATGAGCTCTCTTCGTTCCCCCGCCCCAAGCCTCGTAGGGTT
CCCCCTTTGTCTTCCGTGGCAGACTCCAACCGTGGTTGGATGTCGCGCAA
CAGTGTGTCGGTAGTACACAATGGTCTCCCCCTTTCGTCCCAGTTGGCTC
GCACGCGTCAGGCCGAGTTGGAAGAGGCAGCGAAGTTGGTCGAGATAGCT
CGCGTTCGAGAAATCGCCACCAACTACACGAAAACCAAGTTGCGTGAGAT
TAAAATCCACCCCCGCATGCCATGGCAGCCAAGCCTTAAAAACGCGGTGC
CACAGCTCCTAGACTCCATCTCTGCCGCGGTCCTCGACATTTTGCAACAA
GCGGATCCGTTTATCGTGTTCGAAGACTCGGATAGTTGGTGTCGAGGATG
GGAAAATCCTTTACGGAAGGCGATGATTTCAGCGGTTGTCACAGAGAAAG
ACACGACCGGCGAACTGATTTCCTCAATCAACGACATGTTCGCGCAGGTG
AAGCAGAGGCTTGATGAGGGCTTGAGCGGTGGAGAAGCTTTCCAGTTCCT
CCTGCGGCTGGTAGCGACCCATTTCGACTA
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Coding sequence (CDS) from alignment at P-lacustris_contig114:176190..177269-

>mRNA_P-lacustris_contig114.1108.1 ID=mRNA_P-lacustris_contig114.1108.1|Name=mRNA_P-lacustris_contig114.1108.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=906bp|location=Sequence derived from alignment at P-lacustris_contig114:176190..177269- (Pleurocladia lacustris SAG_25_93)
CCGGGCCGCTCCGACTCCGGCGCCCAGTCCTCGCCGCGCAGCGGGGACAC
CAGTGACGGCCGCGGAAGAGGGCGAGGGGGAGGGCGAACGGCCAATCCGC
GCGCGGGGAAGAGCAGGAGGAGGCGTGCGTCCGACAAGGAGGAGCGGACG
CCCAGCCAGGGTTCGCGCCCGAAGGAGGAGGAGCGGAAGTCCACCCGCAC
CCGACGCCGCGAGGACTCGCCGCAGCGCAACACCGGCAGCAATCCGGACC
GCAGCACCAGACGGAGGGAGGACTCGCCGCGGCGTTCGGAGACCGGGCCG
CTCCGACTCCGGCGCCCAGTCCTCGCCGCGCAGCGGGGACACCAGTGACG
GCCGCGGAAGAGGGCGAGGGGGAGGGCGAACGGCCAATCCGCGCGCGGGG
AAGAGCAGGAGGAGGCGTGCGTCCGACAAGGAGGAGCGGACGCCCAGCCA
GGGTTCGCGCCCGAAGGAGGAGGAGCGGAAGTCCACCCGCACCCGACGCC
GCGAGGACTCGCCGCAGCGCAACACCGGCAGCAATCCGGACCGCAGCACC
AGACGGAGGGAGGACTCGCCGCGGCGTTCGGAGACCCGCTGTCGCGTCGG
AGCAGACTTCGGCGTAGGGACCGGCCGAGGAGGAGGGCCAGCCCTCGGAC
TCGGAGGTGGAGGATGCGAAATCTTCGGCTTCGGATGGCGGGAGTGCCTC
CGCGTCGGGAGAAGGAGAGGCTTCTCCTACATCAGTACACGCCCGCTGTC
GCGTCGGAGCAGACTTCGGCGTAGGGACCGGCCGAGGAGGAGGGCCAGCC
CTCGGACTCGGAGGTGGAGGATGCGAAATCTTCGGCTTCGGATGGCGGGA
GTGCCTCCGCGTCGGGAGAAGGAGAGGCTTCTCCTACATCAGTACACGGT
GAGTGA
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