mRNA_P-lacustris_contig114.1102.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig114.1102.1
Unique NamemRNA_P-lacustris_contig114.1102.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig114.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig114contigP-lacustris_contig114:80385..82135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size896
Cds size720
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig114.1102.1prot_P-lacustris_contig114.1102.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig114 80385..81961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.461828-CDS-P-lacustris_contig114:80384..807961622815445.461828-CDS-P-lacustris_contig114:80384..80796Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 80385..80796 +
1693493544.33275-CDS-P-lacustris_contig114:80384..807961693493544.33275-CDS-P-lacustris_contig114:80384..80796Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 80385..80796 +
1622815445.477087-CDS-P-lacustris_contig114:81653..819611622815445.477087-CDS-P-lacustris_contig114:81653..81961Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 81654..81961 +
1693493544.3491385-CDS-P-lacustris_contig114:81653..819611693493544.3491385-CDS-P-lacustris_contig114:81653..81961Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig114 81654..81961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.4889185-UTR-P-lacustris_contig114:81961..821351622815445.4889185-UTR-P-lacustris_contig114:81961..82135Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig114 81962..82135 +
1693493544.3612366-UTR-P-lacustris_contig114:81961..821351693493544.3612366-UTR-P-lacustris_contig114:81961..82135Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig114 81962..82135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig114.1102.1

>prot_P-lacustris_contig114.1102.1 ID=prot_P-lacustris_contig114.1102.1|Name=mRNA_P-lacustris_contig114.1102.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=240bp
PIGILQATQDGVLQATRDLRAGALTSVSPSEDTHTPDAPRAGALPDVLRA
GALPAVTAGARSAVAALGFELTTQDVRDDAVHGHIGPETQQERDSGHLGS
APHDGTAVPRRLDSAPRDARAGVLAAAPPLVVGRAQDGSADRTSPASMSD
TERAAIISTRPAALSAAFSDATWLELGHATRQDIILNVQRGRRRKTTREP
KPRGRSWTASTSRRGTQLYPWRKRSAAPSTSWRRKQLSS*
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mRNA from alignment at P-lacustris_contig114:80385..82135+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig114.1102.1 ID=mRNA_P-lacustris_contig114.1102.1|Name=mRNA_P-lacustris_contig114.1102.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1751bp|location=Sequence derived from alignment at P-lacustris_contig114:80385..82135+ (Pleurocladia lacustris SAG_25_93)
CCGATTGGAATTCTGCAGGCCACCCAGGATGGGGTACTTCAGGCCACTCG
CGATCTCAGAGCCGGCGCGCTCACATCGGTTTCACCCTCGGAGGATACGC
ACACCCCTGACGCTCCGCGAGCCGGCGCGCTCCCCGACGTCCTTCGAGCC
GGTGCGCTCCCTGCGGTGACTGCTGGCGCGCGCTCTGCGGTAGCCGCCCT
CGGGTTTGAGCTGACCACCCAAGATGTTCGAGATGACGCAGTTCATGGCC
ACATTGGCCCCGAGACCCAACAGGAGCGGGATTCTGGGCACCTCGGCTCC
GCGCCTCATGACGGTACTGCTGTACCCAGGCGCCTGGACTCCGCGCCCCG
AGACGCACGAGCGGGCGTGCTCGCAGCAGCCCCCCCTCTCGTTGTTGGCC
GGGCTCAGGACGGTGGGCTCGTCGTGCCTGCTGCTCGGGATGCAGGCTTC
GAATCtTTTCTTTTGCAGAAAAAGCACGCCCTTGCAACCCGCCCTTCTGA
CCTCAGGTCCCTGCGCGGACAACGGTCGTTGGCCCCTTTTGTAGCGCCAC
CACCGCGACAGGCTGTGCTGCGTACGGATACCCCTAGGCCAGCACGTGTC
ATGCACCATTTTGCTCGAGCCGAGGCGGAGTCCTCCTATACAGCAGTGCC
GCGTGAAATTGGTTTTGTCGATCCCCAACCTGTGCAAGAACCACTTGAAA
TTAAAGTGCATCCTCTTTTGGTATCTGGCTCGAATCCAACTTCAATGCCG
ATTTTGCGATTTTCGCGCTTTCACACTTCAAGGCCAGGCGCCACCGAGTA
CCCCTCTCTGGCAGTACAGCAGTTGTTGTCGAACCGTTCAAGCATCCCTT
TGGCTCCACCTTTGACGCTTCCCCCTGCTGCACCCCCACTTCAGCGCGCG
TCTATTGACCCACGCCGCTTTGAAACAGCACCGAGGACGAATTTTTCAAT
TTCGCTGCAACCGCCCGCCACTCGCGAAAAATCGAGTCGAGTTTTGACTG
CACCGGTTTGTTCTGCTGCTCCACCTCTGAAAAATCGAGTCGTATTGTTG
ACCCAACTCTTCCCCCCGCTACGACGCTTCGACGCTCAAAACGTTTAGCC
AGCCGGGCGAACCAGTCGGCAACACCGGATGCTCCTGCAGTTTCTTCACC
ACGGGTTGAGAATGTCACCGGCGATGTTGCACCCCGCCTTGAAAGTTTCG
CTGAAATCAGCTCCCGCCGCACTTTCCTGCCCCCCCCTGCCGATTTTTCT
CGACCTCCACCGAGGACAGGTAGTGCGGATCGGACATCACCAGCCAGCAT
GTCCGACACAGAACGAGCTGCGATCATCAGCACGAGACCGGCGGCTCTCT
CGGCAGCATTCTCCGACGCAACCTGGCTCGAATTGGGCCACGCCACCCGA
CAGGACATCATCCTGAACGTACAACGGGGGCGAAGGAGGAAGACGACTCG
AGAGCCCAAGCCCAGAGGGAGGAGCTGGACCGCCTCGACATCTCGGCGAG
GGACTCAGCTTTATCCCTGGCGCAAGCGGAGCGCAGCGCCCTCGACCTCG
TGGCGGAGGAAACAGCTTTCCAGCTGAGGAAGCGAGCCATGAGCGCAGAT
CTTGAGCGGCGCAGGCGACAGGCGGTAAGGGACGCCCAGGACAGGGAGCG
TTTCCTCGCGAAACAGGGGCGCACCCGCCAGCCAGCCTCGGGTTCGGACG
CAACCCGGTCCGCGGTTGCCGTTGCCTCCGCGGAGTCCGCCTGGGAGGCT
G
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Coding sequence (CDS) from alignment at P-lacustris_contig114:80385..82135+

>mRNA_P-lacustris_contig114.1102.1 ID=mRNA_P-lacustris_contig114.1102.1|Name=mRNA_P-lacustris_contig114.1102.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1440bp|location=Sequence derived from alignment at P-lacustris_contig114:80385..82135+ (Pleurocladia lacustris SAG_25_93)
CCGATTGGAATTCTGCAGGCCACCCAGGATGGGGTACTTCAGGCCACTCG
CGATCTCAGAGCCGGCGCGCTCACATCGGTTTCACCCTCGGAGGATACGC
ACACCCCTGACGCTCCGCGAGCCGGCGCGCTCCCCGACGTCCTTCGAGCC
GGTGCGCTCCCTGCGGTGACTGCTGGCGCGCGCTCTGCGGTAGCCGCCCT
CGGGTTTGAGCTGACCACCCAAGATGTTCGAGATGACGCAGTTCATGGCC
ACATTGGCCCCGAGACCCAACAGGAGCGGGATTCTGGGCACCTCGGCTCC
GCGCCTCATGACGGTACTGCTGTACCCAGGCGCCTGGACTCCGCGCCCCG
AGACGCACGAGCGGGCGTGCTCGCAGCAGCCCCCCCTCTCGTTGTTGGCC
GGGCTCAGGACGCCGATTGGAATTCTGCAGGCCACCCAGGATGGGGTACT
TCAGGCCACTCGCGATCTCAGAGCCGGCGCGCTCACATCGGTTTCACCCT
CGGAGGATACGCACACCCCTGACGCTCCGCGAGCCGGCGCGCTCCCCGAC
GTCCTTCGAGCCGGTGCGCTCCCTGCGGTGACTGCTGGCGCGCGCTCTGC
GGTAGCCGCCCTCGGGTTTGAGCTGACCACCCAAGATGTTCGAGATGACG
CAGTTCATGGCCACATTGGCCCCGAGACCCAACAGGAGCGGGATTCTGGG
CACCTCGGCTCCGCGCCTCATGACGGTACTGCTGTACCCAGGCGCCTGGA
CTCCGCGCCCCGAGACGCACGAGCGGGCGTGCTCGCAGCAGCCCCCCCTC
TCGTTGTTGGCCGGGCTCAGGACGGTAGTGCGGATCGGACATCACCAGCC
AGCATGTCCGACACAGAACGAGCTGCGATCATCAGCACGAGACCGGCGGC
TCTCTCGGCAGCATTCTCCGACGCAACCTGGCTCGAATTGGGCCACGCCA
CCCGACAGGACATCATCCTGAACGTACAACGGGGGCGAAGGAGGAAGACG
ACTCGAGAGCCCAAGCCCAGAGGGAGGAGCTGGACCGCCTCGACATCTCG
GCGAGGGACTCAGCTTTATCCCTGGCGCAAGCGGAGCGCAGCGCCCTCGA
CCTCGTGGCGGAGGAAACAGCTTTCCAGCTGAGTAGTGCGGATCGGACAT
CACCAGCCAGCATGTCCGACACAGAACGAGCTGCGATCATCAGCACGAGA
CCGGCGGCTCTCTCGGCAGCATTCTCCGACGCAACCTGGCTCGAATTGGG
CCACGCCACCCGACAGGACATCATCCTGAACGTACAACGGGGGCGAAGGA
GGAAGACGACTCGAGAGCCCAAGCCCAGAGGGAGGAGCTGGACCGCCTCG
ACATCTCGGCGAGGGACTCAGCTTTATCCCTGGCGCAAGCGGAGCGCAGC
GCCCTCGACCTCGTGGCGGAGGAAACAGCTTTCCAGCTGA
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