mRNA_P-lacustris_contig1139.1096.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1139.1096.1
Unique NamemRNA_P-lacustris_contig1139.1096.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 462 bits (1190), Expect = 6.520e-164
Identity = 242/255 (94.90%), Postives = 250/255 (98.04%), Query Frame = 1
Query:    4 GVAKKQVKKQVKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            GVAKKQVKKQVKSTPKKV DPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIR+QRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAA+EAG EPAPSKAPKVIKFGLKHVTTLIEE+KASLVVIAHDV PIELVVW+PALCRKMG+PYCIMKGKARLGTLVHQKNAAVICLT+VNKEDESKLS LK+NF AQFNEGFVRKWGGG+MGLKTQRKLEKRQKAIEAELAKKAQY
Sbjct:    2 GVAKKQVKKQVKSTPKKVADPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 328 bits (841), Expect = 8.630e-111
Identity = 176/242 (72.73%), Postives = 207/242 (85.54%), Query Frame = 1
Query:   55 VPDPLFPARKKSFRIGRDIQPKV-DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREA-GNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKK--AQY 768
            V DPLF A+ +SFR+G DI+PK  DLSR+VKWPR +RIQRQRKIL+QRLKVPP+I QFS+ ++KNQATEL K+L+KYQPE KKAKQQRLKE+AAA    G +P P+     +K+GLKHVTTLIE+K+A LV IAHDVNP+ELVVW+PALCRKMGVP+C++K KARLGTL H+KNAAV+ LT VNKED++KL TL ANF AQFN+  VRKWGGGIMGLKTQRKLEKRQKA+EAELAKK  AQY
Sbjct:   19 VKDPLFQAKPRSFRVGGDIRPKKRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 314 bits (804), Expect = 3.510e-105
Identity = 165/251 (65.74%), Postives = 197/251 (78.49%), Query Frame = 1
Query:   25 KKQVKSTPKKV----PDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKK 759
            KK+VK  P K     PDPLF A  ++FR+G DIQP  DLSRFVKWPRY+R+QRQ+KIL QRLKVPP++NQF+  +DKNQA EL K+LMKYQPEDK AK  R+K +A A+ AG      KAP V+KFGLKHVT L+E KKA LV IA DV+PIELVVW+PALC+KM VPYCI+K K+RLGT+VHQK AAV CLT+V KED+  L  L++NFKA +N+     RKWGGGIMGLKTQ KL KR+KA++AELAKK
Sbjct:    4 KKEVKKAPPKKEAAKPDPLFQATPRNFRVGGDIQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 308 bits (789), Expect = 7.670e-103
Identity = 160/236 (67.80%), Postives = 191/236 (80.93%), Query Frame = 1
Query:   61 DPLFPARKKSFRIGRDIQPK-VDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 765
            +PLFP+  KSFRIG D++ K  DLSR+V+WPRY+RIQRQ+KIL+QRLKVPPSINQF + +DKNQA+EL K+L+KYQPE K AK  RL+ +A A  A         P  +KFGLKHVTTLIE+KKA LVVI HDV+PIELV+W+PALCRKM VP+ I+KGK+RLGTL H+K  +V+CLTSVNKEDESKL TL  NFKAQFN+   RKWGGGIMGLKTQ KL+KR KA+E E AKKA+
Sbjct:   20 NPLFPSTPKSFRIGGDLRLKGKDLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 307 bits (787), Expect = 1.890e-102
Identity = 167/247 (67.61%), Postives = 195/247 (78.95%), Query Frame = 1
Query:   34 VKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            V ST KK  +PLF +  K+FR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS  +DKN AT+L K+L+KYQPE K AK  RL+ IAA ++    P     P V+KFGL HVT+LIE KKA LVVIAHDVNPIELVV++PALCR+  +PYCI+KGKARLG LVHQKNAAV+ LT VNKED++K  +L   F+A+FNE     RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   25 VSSTSKK--NPLFASTPKNFRKGNDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV)

HSP 1 Score: 305 bits (780), Expect = 2.340e-101
Identity = 161/242 (66.53%), Postives = 193/242 (79.75%), Query Frame = 1
Query:   49 KKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            KK  DPLFP+  K+FR+G DIQPK DLSRFV+WP+ +R+QRQ KIL  RLKVPPSINQF+  +DKN AT+L K+L+KYQPE K AK QRL++IAA +E  + P     P VIK+GL HVT+LIE KKA +V IAHDV PIELVV++PALCRKM +PYCI+KGKARLG LVH+KNAAV+ LT VNKED++K  +L   F+AQFN+     RKWGGGIMGLKTQ+KLE R KA+ AELAKKAQY
Sbjct:   30 KKGADPLFPSAPKNFRLGGDIQPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 305 bits (780), Expect = 2.590e-101
Identity = 166/243 (68.31%), Postives = 193/243 (79.42%), Query Frame = 1
Query:   46 PKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            PKK  DPLF +  K+FR+G DIQPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQF+  IDKN A +L K+L+KYQPE K AK  RL+ IAA +E  + P     P VIK+GL HVT+LIE KKA LVVIAHDVNPIELVV++PALCRK  +PY I+KGKARLG LVH+KNAAV+ LT VNKED+SK  +L + FK +FN+     RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   34 PKK--DPLFQSAPKNFRLGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 304 bits (779), Expect = 3.210e-101
Identity = 163/245 (66.53%), Postives = 194/245 (79.18%), Query Frame = 1
Query:   40 STPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            S PKK  DPLF +  K+FR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPS+NQFS  +DKN AT+L K+L+KYQPE K AK  RL+ IAA +E  + P     P V+KFGL HVT+L+E KKA LVVIAHDV+PIELVV++PALCR+  +PYCI+KGK+RLG LVHQKNAAV+ LT VNKED++K  +L   F A+FNE     RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   28 SKPKK--DPLFQSTPKNFRRGGDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: W7TKH1_9STRA (60S ribosomal protein L7a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH1_9STRA)

HSP 1 Score: 302 bits (774), Expect = 1.320e-100
Identity = 162/238 (68.07%), Postives = 192/238 (80.67%), Query Frame = 1
Query:   61 DPLFPARKKSFRIGRDIQPKV-DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNE-PAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            +PLF A  +SFRIG  I+PK  DLSRFVKWPRY+RIQRQRKIL QRLKVPP+INQFSKA+DKNQATEL K+L KY+PE K  K++RLK++AAA+ +G E PAP+K   VIK+GLKHVT LIE KK   V IAHDVNPIELVVWIPALCRK G+PY I+KGKARLG LVH+KNAAV+ L    KED++    + A FK +FN+   R WGGGIMGLKTQ++LE RQ+A+EAELAKKA +
Sbjct:   19 NPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQT-VIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255          
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A2D4BTU1_PYTIN (60S ribosomal protein L7a n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BTU1_PYTIN)

HSP 1 Score: 301 bits (772), Expect = 3.840e-100
Identity = 161/244 (65.98%), Postives = 193/244 (79.10%), Query Frame = 1
Query:   40 STPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVR-KWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            S PKK  DPLF +  K+FR+G ++QPK DLSRFV+WPRY+RIQRQRK L QRLKVPPSINQFS  IDKN AT+L K+L+KYQPE K AK +RL+ IAA +E  + P     P  +KFGL HVTTLIE+KKA +VVIAHDVNPIELV+++PALCRK  +PY I+KGK+RLG LVH+KNAAV+ LT VNKED++K  +L   FK +++E   R KWGGGIMGLKTQ+KLE R KAI AE AKKAQY
Sbjct:   30 SKPKK--DPLFQSTPKNFRLGGNVQPKRDLSRFVRWPRYVRIQRQRKXLYQRLKVPPSINQFSNTIDKNSATDLFKLLLKYQPETKAAKTERLRNIAAGKEEASAP-----PATVKFGLNHVTTLIEKKKAKMVVIAHDVNPIELVIFLPALCRKFDIPYAIVKGKSRLGQLVHKKNAAVVALTHVNKEDKAKFDSLAQAFKGKYDEAAARRKWGGGIMGLKTQKKLELRAKAIAAEAAKKAQY 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI6.520e-16494.9060S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A6V1R9A7_HETAK8.630e-11172.7360S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
F0Y2N8_AURAN3.510e-10565.7460S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
A0A7S3HBR5_9STRA7.670e-10367.8060S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
A0A0P1B814_PLAHL1.890e-10267.6160S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
T0QDT5_SAPDV2.340e-10166.5360S ribosomal protein L7a n=3 Tax=Saprolegniaceae ... [more]
K3WB90_GLOUD2.590e-10168.3160S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]
A0A3R7JAR0_9STRA3.210e-10166.5360S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
W7TKH1_9STRA1.320e-10068.0760S ribosomal protein L7a n=2 Tax=Monodopsidaceae ... [more]
A0A2D4BTU1_PYTIN3.840e-10065.9860S ribosomal protein L7a n=3 Tax=Eukaryota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1139contigP-lacustris_contig1139:36964..40921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score467.2
Seed ortholog evalue4.8e-129
Seed eggNOG ortholog2880.D8LN40
Preferred nameDOCK4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG1358@1,KOG3166@2759
Ec32 ortholog descriptionRibosomal protein L7Ae/L8/Nhp2 family
Ec32 orthologEc-05_003390.1
EC3.1.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Exons5
Model size771
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1139.1096.1prot_P-lacustris_contig1139.1096.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1139 36964..40921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.8968441-CDS-P-lacustris_contig1139:36963..370771622815444.8968441-CDS-P-lacustris_contig1139:36963..37077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 36964..37077 +
1693493544.0411685-CDS-P-lacustris_contig1139:36963..370771693493544.0411685-CDS-P-lacustris_contig1139:36963..37077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 36964..37077 +
1622815444.9106023-CDS-P-lacustris_contig1139:38184..382501622815444.9106023-CDS-P-lacustris_contig1139:38184..38250Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 38185..38250 +
1693493544.0621192-CDS-P-lacustris_contig1139:38184..382501693493544.0621192-CDS-P-lacustris_contig1139:38184..38250Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 38185..38250 +
1622815444.9282832-CDS-P-lacustris_contig1139:38650..388481622815444.9282832-CDS-P-lacustris_contig1139:38650..38848Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 38651..38848 +
1693493544.0706463-CDS-P-lacustris_contig1139:38650..388481693493544.0706463-CDS-P-lacustris_contig1139:38650..38848Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 38651..38848 +
1622815444.9402068-CDS-P-lacustris_contig1139:39643..398021622815444.9402068-CDS-P-lacustris_contig1139:39643..39802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 39644..39802 +
1693493544.078869-CDS-P-lacustris_contig1139:39643..398021693493544.078869-CDS-P-lacustris_contig1139:39643..39802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 39644..39802 +
1622815444.9504383-CDS-P-lacustris_contig1139:40687..409211622815444.9504383-CDS-P-lacustris_contig1139:40687..40921Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 40688..40921 +
1693493544.0882285-CDS-P-lacustris_contig1139:40687..409211693493544.0882285-CDS-P-lacustris_contig1139:40687..40921Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1139 40688..40921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1139.1096.1

>prot_P-lacustris_contig1139.1096.1 ID=prot_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=257bp
QGVAKKQVKKQVKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWP
RYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKK
AKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIA
HDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVN
KEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAEL
AKKAQY*
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mRNA from alignment at P-lacustris_contig1139:36964..40921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1139.1096.1 ID=mRNA_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3958bp|location=Sequence derived from alignment at P-lacustris_contig1139:36964..40921+ (Pleurocladia lacustris SAG_25_93)
CAGGGTGTTGCCAAGAAGCAAGTGAAGAAGCAGGTCAAGTCCACCCCTAA GAAGGTGCCCGACCCCCTCTTCCCAGCCAGGAAGAAGTCTTTCCGCATCG GCCGCGACATCCAGGTATGACACATGGGAGACATTTGGGCGTGTTTTTTT GTCGCCGGAGATGGCGGGGAGGTGGAAAGCAGGAGAGCGAGTCCACGCCA CACGACTCCATTCTGCCCCCCTGCCCGCCCGCTCCGGCGACATTTTAGCG ATTGGCCGATCGCGATGATACAAAGTCTACGGCCCCCGGCGGCGAGAACG GAAAAACGCAAAGACACGTAAACGTGTCTGTTTTTCGTCTGCCTTCGCCC TCCTGTCTTCCGCCCGCCCTCCTTCCCTACTTGCCTCCCCCCCGCCATTC CGACCCCATCGTCTCCCTACCTCTCGCTGCGAGGCGTTGGCGGAGGCGGC GGATGGAGGGGCGGGGGTTGGAGTGTGGTAAGCGAGAGAAAAGGTTGGCG GAAGGGAGGAGGGCTACGGGCAGACAGCCCCGGGTTACCAAGGAGTTCGA AGTTCCTTCTTTCAAAAAGGTTCTGAGAATTTAGTAGCGGCAGTTTCCAC CCCGCCGTGATGATACAAATTGGGGTGGAATCTTCATTTTTAGCGCTATT GCCCCGAGCGTTATGAAACAAGTGCGGTGGTAAACAAGGTGGGAGAGTCT ACGCGAACCGTATTGCTCGAGCCGTAGAACGATCGAACGCACTCAGCCCC GAGCCGTTCGCCCTCCCTTACCGGCAACGCTTACAATCGTTTACTCAAGA GTTGGTTGTGGACAAATGTGTCGTATGGTCAATGTCGGAGATGTTGGCGA CATGAAGCAAAGCTGGTGCACTCGCTGCCGGTGGCTTTTTTTTCGGTTGA TGCGATCGACGTGAATTAGGAATATTGTAAACTTCGTGGTATTGCCGCGA GATTCGGGGACGCACCAAATCGTCGATTGTGCTGGACCGTGTGTCCGGGT GATACCAACGCTTGTGGCGCTTTGTCGCCCATCTGGCTCCTTCGGCACTG GCAACTAACTGACGTCTTCCTTTGCAAAAAGATCCGACCACCGTCGCCCT CTTCGGCACACGGTGCAGCTACTTCAAGAGGCGCTTGAAGTGGGGAAGCT TTCAAGAACCTCAAGGTGTCTCTTCCTCTAATCGCGTCTCTTGTCATACG TACGTGTTTCTATCATAACAGCCTAAGGTGGACCTGTCGCGGTTCGTGAA ATGGCCGAGGTACATCCGCATCCAGCGCCAGCGTAAGGTGGGGACACTGC TATACTTTGACCGACACCATCATAGGTTTGTCGTCCAAAAGTGAATCGTG TTGTCATTGAGTGTGAGAGAGGTCGAGAGGAAGCAGTCCCGCTTGATGGG TGCTCTGCGCAGAAGGTGTAGTAGCGTACGTTTGGAATAAATGATGATGA TGGTGGGTTGAGTTGGAACTTGGCAATCTCGGTATCGATGTTAACTTTTG CAAGACCGTTCCCGGCTATGGTTCGTAGAGATGAAGTTCACCGTTTGTTG TCTCCCCTCAACACCTACTGTATTGCCTGAAACTTTTGCCGCCTTGTCTA AAATGTATTTTGTCGTTGTTCATGTACTCCCTTGGCTTGTCTTGTTTTTT CCCTCACCTCTCGTGCCATTTTTTTCCTTTTTTTCAGATCCTGGTGCAGC GCCTCAAGGTGCCCCCAAGCATCAACCAGTTCAGCAAGGCCATCGACAAG AACCAGGCCACAGAACTCCTCAAGGTGCTCATGAAGTACCAGCCGGAAGA CAAGAAGGCCAAGCAGCAGCGCCTCAAGGAGATCGCCGCCGCTAGGGAGG CCGGCAATGAGCCTGCCCCTTCCAAGGCACCCAAGGTGCGGATTCGGGCT TATATTTTCCTGGGTAGTTGCTACGCGGTATGCTACCTATTGCTTCCGCT CCTCCGTCTTGTATTCGTTTTCACACTAGTATAAGGTGCCAAAAGTTCGC AAAAGCCCCTACCTTCCCTTCCCGTAATTGCTTCTTTTGTTCTCGGGGCT CTTATCTTTGTTGGAACCAGTACAGAAGGGAGTAGGGGCGCCCTCGTTTG CTGCTTGTCAGCGGCTTAGGTTTGTTGTTGTGCGTTTTGCTGATTTCACC GTTGTATGCACGGACGTGCATGTGTTGGGAACGGCGACGATTGCGGTACG CACACTCGAGTTAGGTGTGCGTACGTCTGGAGCGACGATTAGGCTTTTTT GCGCCCAAGTTACGCGAATTGGTCTGCATAGCTCGTGCCAAGATGACCAC CAAGTCGTGTCAAGCTCCCGTGTGGTGAAAAGCTTAGGGTGCCCCTCATC CTGATCACATCACGAGCCACGGCGGGGAAAGCATACGTGTGGCGCGACAC TCTTCTTTTGAATTCCATGCACCCATTCAAACACCGTGCGTCGTAGGCCC TTTCGGCTCCGATCGATTTCGTGTCGTTGGAAAACAAACATGTCACGGTG CCCCCTCCCCGCGTAACTCACAGTGCCGACATCATCCCGAGCGTGTCCAT CTATGCTGTTGGGCATGAATGATGTCAACAAGTCACCAAAATGAAACACA CTTTGGCACCGTTAAATAACACAAAATCTCATCGTTCATCGCGTGGTGCT GACTCCTCATCGTTTTCCCTCTTCGTTCAGGTCATCAAGTTCGGGCTGAA GCACGTGACCACCCTCATCGAGGAGAAGAAGGCATCTCTTGTGGTGATCG CGCACGACGTCAACCCCATCGAGCTGGTCGTCTGGATTCCCGCCCTGTGC AGGAAGATGGGCGTGCCCTACTGCATCATGAAGGGCAAGGTGAGATTGAC GGAGCTGTGTGCGCGCCTGCGCTGCGGATCATATCTTTTTTGTTGCCCGA GATCCGTCGCTCGGTTCATCGCAAGAAAGGCCTTCGCAAGTTCTTCCTAG GTGCTTTCCTCTCACACAGAGAGTTGTTATTGTCGGTTTGATTAGAATAA GTGAACGGACAAGGAGTTCTTGGAGACGAGATAGCCATCCTTCAATTTGC GCCTCTTTCCAATGCCTCTAGAAGTGTGTGCGGAGGTCGAGCTTTGTTGA GTGCTTCAAACGGGCTCGTTGAAGTCGTATGTGGACGCCATTTTGATGCG CCGGTCGGTGTCTCACCCCCCGCCCTCTCGGGTGTACGTCGTACATGCAT ATCAATGGACACTGAGAGATGAGAGACCGCCTGAGGGCGGCAGTAGTAGG CGTGCACGCGTGTTGAGTGTAGGCTCTCACGTTCGCGTGGCTTGTGAGGC CGGCTCAACTGGCTCTTACATTCACTAAACAACACATCTGTCCCGGTGCT AAACTCAAACGACAAAACAAAGCTGGTCACAGACTTTCGTGTGTAGGGGC GGGGGGAAGAGTCGATCTACGAAACCCCTTGAGCGGCCGCTTTGCGGACT CGCACGCGTAAGTTTTGCCTGCTTTGCGAACTCCGCTCCTGTACCCATTG GCGTGTGCCAAACACGGCCTTCCCAGCCTCATGCTCGAGGAGAGAAGGAG CGGCAGCAAACTTAATCAAAAGTTGTAGTGTGTCGAAATGCTGGAGACGT CTTCGCCGTTATTGGCATCGAGTCTGCTTTTTTTTCTTGACCCAAAACCG GACTTGGTTTACGTTCCCCCGTCCCCTCTTTATTCGCTGAACATTCGTCG TACCTCCCTCCCGCCCCCCGGCAGGCGCGCCTCGGCACTCTCGTGCACCA GAAGAACGCCGCCGTGATCTGCCTGACCTCCGTGAACAAGGAGGACGAGT CCAAACTCTCCACCCTCAAGGCGAACTTCAAGGCCCAGTTCAACGAGGGC TTCGTCAGGAAGTGGGGCGGCGGTATCATGGGCCTCAAGACCCAGCGCAA GCTGGAAAAGAGGCAGAAGGCCATCGAGGCCGAGCTTGCCAAGAAGGCTC AGTACTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1139:36964..40921+

>mRNA_P-lacustris_contig1139.1096.1 ID=mRNA_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1542bp|location=Sequence derived from alignment at P-lacustris_contig1139:36964..40921+ (Pleurocladia lacustris SAG_25_93)
CAGGGTGTTGCCAAGAAGCAAGTGAAGAAGCAGGTCAAGTCCACCCCTAA
GAAGGTGCCCGACCCCCTCTTCCCAGCCAGGAAGAAGTCTTTCCGCATCG
GCCGCGACATCCAGCAGGGTGTTGCCAAGAAGCAAGTGAAGAAGCAGGTC
AAGTCCACCCCTAAGAAGGTGCCCGACCCCCTCTTCCCAGCCAGGAAGAA
GTCTTTCCGCATCGGCCGCGACATCCAGCCTAAGGTGGACCTGTCGCGGT
TCGTGAAATGGCCGAGGTACATCCGCATCCAGCGCCAGCGTAAGCCTAAG
GTGGACCTGTCGCGGTTCGTGAAATGGCCGAGGTACATCCGCATCCAGCG
CCAGCGTAAGATCCTGGTGCAGCGCCTCAAGGTGCCCCCAAGCATCAACC
AGTTCAGCAAGGCCATCGACAAGAACCAGGCCACAGAACTCCTCAAGGTG
CTCATGAAGTACCAGCCGGAAGACAAGAAGGCCAAGCAGCAGCGCCTCAA
GGAGATCGCCGCCGCTAGGGAGGCCGGCAATGAGCCTGCCCCTTCCAAGG
CACCCAAGATCCTGGTGCAGCGCCTCAAGGTGCCCCCAAGCATCAACCAG
TTCAGCAAGGCCATCGACAAGAACCAGGCCACAGAACTCCTCAAGGTGCT
CATGAAGTACCAGCCGGAAGACAAGAAGGCCAAGCAGCAGCGCCTCAAGG
AGATCGCCGCCGCTAGGGAGGCCGGCAATGAGCCTGCCCCTTCCAAGGCA
CCCAAGGTCATCAAGTTCGGGCTGAAGCACGTGACCACCCTCATCGAGGA
GAAGAAGGCATCTCTTGTGGTGATCGCGCACGACGTCAACCCCATCGAGC
TGGTCGTCTGGATTCCCGCCCTGTGCAGGAAGATGGGCGTGCCCTACTGC
ATCATGAAGGGCAAGGTCATCAAGTTCGGGCTGAAGCACGTGACCACCCT
CATCGAGGAGAAGAAGGCATCTCTTGTGGTGATCGCGCACGACGTCAACC
CCATCGAGCTGGTCGTCTGGATTCCCGCCCTGTGCAGGAAGATGGGCGTG
CCCTACTGCATCATGAAGGGCAAGGCGCGCCTCGGCACTCTCGTGCACCA
GAAGAACGCCGCCGTGATCTGCCTGACCTCCGTGAACAAGGAGGACGAGT
CCAAACTCTCCACCCTCAAGGCGAACTTCAAGGCCCAGTTCAACGAGGGC
TTCGTCAGGAAGTGGGGCGGCGGTATCATGGGCCTCAAGACCCAGCGCAA
GCTGGAAAAGAGGCAGAAGGCCATCGAGGCCGAGCTTGCCAAGAAGGCTC
AGTACTGAGCGCGCCTCGGCACTCTCGTGCACCAGAAGAACGCCGCCGTG
ATCTGCCTGACCTCCGTGAACAAGGAGGACGAGTCCAAACTCTCCACCCT
CAAGGCGAACTTCAAGGCCCAGTTCAACGAGGGCTTCGTCAGGAAGTGGG
GCGGCGGTATCATGGGCCTCAAGACCCAGCGCAAGCTGGAAAAGAGGCAG
AAGGCCATCGAGGCCGAGCTTGCCAAGAAGGCTCAGTACTGA
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