mRNA_P-lacustris_contig1139.1096.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI) HSP 1 Score: 462 bits (1190), Expect = 6.520e-164 Identity = 242/255 (94.90%), Postives = 250/255 (98.04%), Query Frame = 1
Query: 4 GVAKKQVKKQVKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
GVAKKQVKKQVKSTPKKV DPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIR+QRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAA+EAG EPAPSKAPKVIKFGLKHVTTLIEE+KASLVVIAHDV PIELVVW+PALCRKMG+PYCIMKGKARLGTLVHQKNAAVICLT+VNKEDESKLS LK+NF AQFNEGFVRKWGGG+MGLKTQRKLEKRQKAIEAELAKKAQY
Sbjct: 2 GVAKKQVKKQVKSTPKKVADPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK) HSP 1 Score: 328 bits (841), Expect = 8.630e-111 Identity = 176/242 (72.73%), Postives = 207/242 (85.54%), Query Frame = 1
Query: 55 VPDPLFPARKKSFRIGRDIQPKV-DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREA-GNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKK--AQY 768
V DPLF A+ +SFR+G DI+PK DLSR+VKWPR +RIQRQRKIL+QRLKVPP+I QFS+ ++KNQATEL K+L+KYQPE KKAKQQRLKE+AAA G +P P+ +K+GLKHVTTLIE+K+A LV IAHDVNP+ELVVW+PALCRKMGVP+C++K KARLGTL H+KNAAV+ LT VNKED++KL TL ANF AQFN+ VRKWGGGIMGLKTQRKLEKRQKA+EAELAKK AQY
Sbjct: 19 VKDPLFQAKPRSFRVGGDIRPKKRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN) HSP 1 Score: 314 bits (804), Expect = 3.510e-105 Identity = 165/251 (65.74%), Postives = 197/251 (78.49%), Query Frame = 1
Query: 25 KKQVKSTPKKV----PDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKK 759
KK+VK P K PDPLF A ++FR+G DIQP DLSRFVKWPRY+R+QRQ+KIL QRLKVPP++NQF+ +DKNQA EL K+LMKYQPEDK AK R+K +A A+ AG KAP V+KFGLKHVT L+E KKA LV IA DV+PIELVVW+PALC+KM VPYCI+K K+RLGT+VHQK AAV CLT+V KED+ L L++NFKA +N+ RKWGGGIMGLKTQ KL KR+KA++AELAKK
Sbjct: 4 KKEVKKAPPKKEAAKPDPLFQATPRNFRVGGDIQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA) HSP 1 Score: 308 bits (789), Expect = 7.670e-103 Identity = 160/236 (67.80%), Postives = 191/236 (80.93%), Query Frame = 1
Query: 61 DPLFPARKKSFRIGRDIQPK-VDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 765
+PLFP+ KSFRIG D++ K DLSR+V+WPRY+RIQRQ+KIL+QRLKVPPSINQF + +DKNQA+EL K+L+KYQPE K AK RL+ +A A A P +KFGLKHVTTLIE+KKA LVVI HDV+PIELV+W+PALCRKM VP+ I+KGK+RLGTL H+K +V+CLTSVNKEDESKL TL NFKAQFN+ RKWGGGIMGLKTQ KL+KR KA+E E AKKA+
Sbjct: 20 NPLFPSTPKSFRIGGDLRLKGKDLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL) HSP 1 Score: 307 bits (787), Expect = 1.890e-102 Identity = 167/247 (67.61%), Postives = 195/247 (78.95%), Query Frame = 1
Query: 34 VKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
V ST KK +PLF + K+FR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS +DKN AT+L K+L+KYQPE K AK RL+ IAA ++ P P V+KFGL HVT+LIE KKA LVVIAHDVNPIELVV++PALCR+ +PYCI+KGKARLG LVHQKNAAV+ LT VNKED++K +L F+A+FNE RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct: 25 VSSTSKK--NPLFASTPKNFRKGNDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV) HSP 1 Score: 305 bits (780), Expect = 2.340e-101 Identity = 161/242 (66.53%), Postives = 193/242 (79.75%), Query Frame = 1
Query: 49 KKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
KK DPLFP+ K+FR+G DIQPK DLSRFV+WP+ +R+QRQ KIL RLKVPPSINQF+ +DKN AT+L K+L+KYQPE K AK QRL++IAA +E + P P VIK+GL HVT+LIE KKA +V IAHDV PIELVV++PALCRKM +PYCI+KGKARLG LVH+KNAAV+ LT VNKED++K +L F+AQFN+ RKWGGGIMGLKTQ+KLE R KA+ AELAKKAQY
Sbjct: 30 KKGADPLFPSAPKNFRLGGDIQPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD) HSP 1 Score: 305 bits (780), Expect = 2.590e-101 Identity = 166/243 (68.31%), Postives = 193/243 (79.42%), Query Frame = 1
Query: 46 PKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
PKK DPLF + K+FR+G DIQPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQF+ IDKN A +L K+L+KYQPE K AK RL+ IAA +E + P P VIK+GL HVT+LIE KKA LVVIAHDVNPIELVV++PALCRK +PY I+KGKARLG LVH+KNAAV+ LT VNKED+SK +L + FK +FN+ RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct: 34 PKK--DPLFQSAPKNFRLGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA) HSP 1 Score: 304 bits (779), Expect = 3.210e-101 Identity = 163/245 (66.53%), Postives = 194/245 (79.18%), Query Frame = 1
Query: 40 STPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFV--RKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
S PKK DPLF + K+FR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPS+NQFS +DKN AT+L K+L+KYQPE K AK RL+ IAA +E + P P V+KFGL HVT+L+E KKA LVVIAHDV+PIELVV++PALCR+ +PYCI+KGK+RLG LVHQKNAAV+ LT VNKED++K +L F A+FNE RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct: 28 SKPKK--DPLFQSTPKNFRRGGDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: W7TKH1_9STRA (60S ribosomal protein L7a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH1_9STRA) HSP 1 Score: 302 bits (774), Expect = 1.320e-100 Identity = 162/238 (68.07%), Postives = 192/238 (80.67%), Query Frame = 1
Query: 61 DPLFPARKKSFRIGRDIQPKV-DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNE-PAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
+PLF A +SFRIG I+PK DLSRFVKWPRY+RIQRQRKIL QRLKVPP+INQFSKA+DKNQATEL K+L KY+PE K K++RLK++AAA+ +G E PAP+K VIK+GLKHVT LIE KK V IAHDVNPIELVVWIPALCRK G+PY I+KGKARLG LVH+KNAAV+ L KED++ + A FK +FN+ R WGGGIMGLKTQ++LE RQ+A+EAELAKKA +
Sbjct: 19 NPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQT-VIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Match: A0A2D4BTU1_PYTIN (60S ribosomal protein L7a n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BTU1_PYTIN) HSP 1 Score: 301 bits (772), Expect = 3.840e-100 Identity = 161/244 (65.98%), Postives = 193/244 (79.10%), Query Frame = 1
Query: 40 STPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAREAGNEPAPSKAPKVIKFGLKHVTTLIEEKKASLVVIAHDVNPIELVVWIPALCRKMGVPYCIMKGKARLGTLVHQKNAAVICLTSVNKEDESKLSTLKANFKAQFNEGFVR-KWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
S PKK DPLF + K+FR+G ++QPK DLSRFV+WPRY+RIQRQRK L QRLKVPPSINQFS IDKN AT+L K+L+KYQPE K AK +RL+ IAA +E + P P +KFGL HVTTLIE+KKA +VVIAHDVNPIELV+++PALCRK +PY I+KGK+RLG LVH+KNAAV+ LT VNKED++K +L FK +++E R KWGGGIMGLKTQ+KLE R KAI AE AKKAQY
Sbjct: 30 SKPKK--DPLFQSTPKNFRLGGNVQPKRDLSRFVRWPRYVRIQRQRKXLYQRLKVPPSINQFSNTIDKNSATDLFKLLLKYQPETKAAKTERLRNIAAGKEEASAP-----PATVKFGLNHVTTLIEKKKAKMVVIAHDVNPIELVIFLPALCRKFDIPYAIVKGKSRLGQLVHKKNAAVVALTHVNKEDKAKFDSLAQAFKGKYDEAAARRKWGGGIMGLKTQKKLELRAKAIAAEAAKKAQY 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1139.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1139.1096.1 >prot_P-lacustris_contig1139.1096.1 ID=prot_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=257bp QGVAKKQVKKQVKSTPKKVPDPLFPARKKSFRIGRDIQPKVDLSRFVKWPback to top mRNA from alignment at P-lacustris_contig1139:36964..40921+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1139.1096.1 ID=mRNA_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3958bp|location=Sequence derived from alignment at P-lacustris_contig1139:36964..40921+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1139:36964..40921+ >mRNA_P-lacustris_contig1139.1096.1 ID=mRNA_P-lacustris_contig1139.1096.1|Name=mRNA_P-lacustris_contig1139.1096.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1542bp|location=Sequence derived from alignment at P-lacustris_contig1139:36964..40921+ (Pleurocladia lacustris SAG_25_93)back to top |