mRNA_P-lacustris_contig113.1042.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig113.1042.1
Unique NamemRNA_P-lacustris_contig113.1042.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: D7FYF7_ECTSI (DRP, dynamin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF7_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 7.600e-157
Identity = 263/370 (71.08%), Postives = 296/370 (80.00%), Query Frame = 3 
Query:  237 IDEEIEKSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSPTLTLIDLPGITHNSAGSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAGLEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLKDLLTCGDDRAITGQDKASINIVP 1346
            ID EIE  LSGEL ALEQLRALLQ N+EV+IPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLV++PG+EPHAVIG  ADL SKGK I ID+IS +I+ LT+ELAGDG AV A PIYLKI+RPS PTLTLIDLP ITHNS   +QDIHT+TVNLVK+FIEN+N+VILVVIPAMDDFANAEAIALA KYDPDGRRTLGVVTK+DN++                                VE DTPAE+VRA E  FF TN E+AG+EKEYWGFDTLV RIV +QAE V+QFIPKFL QSKRR KEL + L DMPKV++ DNELWE FR V+S IRE+LKDLLT G +RAITGQD+ S++I+P
Sbjct:    7 IDNEIENRLSGELGALEQLRALLQNNEEVKIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVAVPGAEPHAVIGGQADL-SKGKIIGIDEISTDIERLTNELAGDGTAVSAKPIYLKIIRPSGPTLTLIDLPDITHNSPDGTQDIHTETVNLVKKFIENDNMVILVVIPAMDDFANAEAIALAKKYDPDGRRTLGVVTKTDNIK--------------------------------VEEDTPAEEVRARERQFFQTNSEMAGIEKEYWGFDTLVGRIVEIQAERVQQFIPKFLAQSKRRTKELAQALRDMPKVFSNDNELWEKFRKVVSTIREELKDLLTFGSNRAITGQDE-SMDIIP 342
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A821VT27_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821VT27_9BILA)

HSP 1 Score: 224 bits (570), Expect = 2.250e-58
Identity = 135/350 (38.57%), Postives = 211/350 (60.29%), Query Frame = 3 
Query:  243 EEIEKSLSGEL-SALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSP-TLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRME-PGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEV-AGLEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            EE+    S EL SA++++R +LQGNQ + +P +VV G QS GKSSVLEA+ G++LPR QNI TR PL L +    G E   +  S   + +     +++DI+ E+  LT+++AG+G  V ++PIYL + + + P  LTLIDLPGIT N   G ++DIH   + L+ ++IE    V+L VIP+  DF+ +E+  LA ++DPD  R L  V+K D    G  I  KL  E PG ++L LG +AV+NR   E++++   E+++  E  FF  + E    L  EY G D LV ++  +Q   +R  +P+ + + + +I+    EL ++P   TT++E W  F+++I A RE ++
Sbjct:    4 EELNSKESRELLSAVDRMREILQGNQ-ICLPEIVVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRMKVTTGDEYAIIHNSQTPVDAMKTIYDMEDIADEVIRLTNDIAGNGTNVSSHPIYLTVYKRNIPYDLTLIDLPGITRNPLPGQAKDIHAQILTLINKYIEPSTAVVLHVIPSSVDFSTSESTKLAKEFDPDCERQLIAVSKIDKYDKG--IAKKLVGEGPGSMKLQLGCVAVLNRNQDEIDSNVSFEEMKERERQFFIKHREAFQNLSDEYKGVDQLVKKLATIQHSRIRSTLPETIEKLRNQIRNKRLELKNIPMAMTTEHECWSKFQSMIDAFRESIQ 350
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A817FC83_9BILA (Hypothetical protein n=12 Tax=Rotaria TaxID=231623 RepID=A0A817FC83_9BILA)

HSP 1 Score: 222 bits (566), Expect = 2.570e-57
Identity = 137/351 (39.03%), Postives = 214/351 (60.97%), Query Frame = 3 
Query:  237 IDEEIEKSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSI-EIDDISKEIDELTDELAGDGAAVCANPIYLKIV-RPSSPTLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAG-LEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            +DE   K  SG LS ++++R +L  N+++ +P +VV G QS GKSSVLEA+ G++LPR QNI TR PL L + S   +E +AVI S     ++ +++ ++++IS  +  LT E+AG+G  V + PIYL +  R  +  LTLIDLPGIT N   G  +DIH   +NL+ ++IE    V+L VIPA  DFA +E++ LA +YDP   R L   TK D    G   +  L   PG ++L LG IAV+NR   E++ +   E+++  EA FF  + E    L  E+ G D LV ++  +Q + +R  +P+ + + +++I+E T EL ++P   TT+ + W  F+++I+A RE ++
Sbjct:    3 VDELNTKESSGLLSTVDRMREILH-NEKITLPEIVVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRMKSTIATE-YAVIRSSKCSENEAETLYDMNEISNVVTRLTKEIAGEGTNVSSTPIYLTVYKRNMAYDLTLIDLPGITRNPLPGQPKDIHAQILNLINKYIEPSTAVVLHVIPASVDFATSESMKLAKEYDPQCLRQLITATKIDKYDKGIAEKL-LGRGPGAMQLKLGCIAVLNRNQDEIDQNISFEEMKKREAEFFIKHHEAFQYLPDEFKGIDQLVKKLAIIQQDRIRSTLPQVIEELRKQIREKTLELRNIPIPMTTEQDCWMKFQSMINAFRESIR 350
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A819GPP9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819GPP9_9BILA)

HSP 1 Score: 222 bits (566), Expect = 2.570e-57
Identity = 137/351 (39.03%), Postives = 214/351 (60.97%), Query Frame = 3 
Query:  237 IDEEIEKSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSI-EIDDISKEIDELTDELAGDGAAVCANPIYLKIV-RPSSPTLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAG-LEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            +DE   K  SG LS ++++R +L  N+++ +P +VV G QS GKSSVLEA+ G++LPR QNI TR PL L + S   +E +AVI S     ++ +++ ++++IS  +  LT E+AG+G  V + PIYL +  R  +  LTLIDLPGIT N   G  +DIH   +NL+ ++IE    V+L VIPA  DFA +E++ LA +YDP   R L   TK D    G   +  L   PG ++L LG IAV+NR   E++ +   E+++  EA FF  + E    L  E+ G D LV ++  +Q + +R  +P+ + + +++I+E T EL ++P   TT+ + W  F+++I+A RE ++
Sbjct:    3 VDELNTKESSGLLSTVDRMREILH-NEKITLPEIVVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRMKSTIATE-YAVIRSSKCSENEAETLYDMNEISNVVTRLTKEIAGEGTNVSSTPIYLTVYKRNMAYDLTLIDLPGITRNPLPGQPKDIHAQILNLINKYIEPSTAVVLHVIPASVDFATSESMKLAKEYDPQCLRQLITATKIDKYDKGIAEKL-LGRGPGAMQLKLGCIAVLNRNQDEIDQNISFEEMKKREAEFFIKHHEAFQYLPDEFKGIDQLVKKLAIIQQDRIRSTLPQVIEELRKQIREKTLELRNIPIPMTTEQDCWMKFQSMINAFRESIR 350
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A813LGD8_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGD8_POLGL)

HSP 1 Score: 223 bits (569), Expect = 5.050e-57
Identity = 129/343 (37.61%), Postives = 202/343 (58.89%), Query Frame = 3 
Query:  261 LSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGS-EPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSPTLTLIDLPGITHNSAGSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCG---IRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAGLEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            LS +L  LE++R + Q  Q + +PGVVV G QSAGKSS+LE + G++ PR QN  TR+P +L++++ P   EP+A +  D+      +   + ++ ++I  LT + A     +    +Y+++VR   P L+LIDLPG+THN A    DIH  TV+LV++++ +E VVIL VIPAM DF NAE I LA KYDP+G+RTLGVVTK D+         +   L      V+L LGF  VVNR+   ++ +   +D+   E   F T+  + GL  ++WG   L+ +I  +QA  V + +PK     + ++ EL +EL ++P    ++ + +  F  V+  + +DL+
Sbjct:  121 LSKKLGLLERVRHVCQAVQ-IALPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCILTMLTDPSILEPYAKVSMDSSFEG-AEQCAVGEVEEKIRALTAQHATGDTFISRKALYVRVVRKDGPQLSLIDLPGVTHN-ADKMADIHEVTVSLVEEYVRHEEVVILCVIPAMSDFGNAEVIKLARKYDPEGKRTLGVVTKCDDAARAEASDVVDKTLMRRDSDVQLKLGFHCVVNRSQKNIDDNMARKDLWVKEQQLFETSERLRGLPSDHWGTLRLMEKIARIQASRVDECLPKIKEAVRAKLLELREELRNLPAQLDSEEDQYRLFNGVLRKVSDDLQ 460
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A815G6I8_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815G6I8_9BILA)

HSP 1 Score: 220 bits (560), Expect = 1.050e-56
Identity = 126/333 (37.84%), Postives = 198/333 (59.46%), Query Frame = 3 
Query:  273 LSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSPTLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAG-LEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIR 1265
            L AL+ +R +L   +++ +P +VVAG QS GKSSVLEAL G++LPR QNI TR PL L L +      +A I    +   + K  ++DDIS+ +  LT  LAGDG  V ++PIYL + + + P LTLIDLPGIT N   G S+DI+   + L+ ++I+ E  ++L VIPA  DF  +E++ ++  YDP+G+R L  V+K D    G G + + +  PG ++L  G +AV+NR+P E+E +   E+++  E  FF  N      + +E  G D LV ++  +Q +++R   PK + + K++++E   EL  +P   T++ E W  F  + +  R
Sbjct:   38 LDALDLMREIL-NEEKINLPEIVVAGDQSVGKSSVLEALSGIQLPRAQNICTRCPLELRLKNSMNDAEYATIRCKGE--EEEKITDLDDISQYVKRLTQTLAGDGVNVSSDPIYLTVYKQNIPDLTLIDLPGITRNPLPGQSKDIYKQIITLIDKYIQPETAIVLHVIPASVDFTTSESVKISKNYDPEGKRQLIAVSKIDKFDKGIGEKLQGK-GPGSMKLEFGCVAVLNRSPEEIEEEISFEEMKQREKAFFKKNHHAFHQVPEELLGSDQLVKKLADIQQDIIRSTFPKIIEEIKQKLREKKIELSALPVAITSELECWTKFNELTTLYR 366
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A812V0V8_9DINO (DRP4C protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V0V8_9DINO)

HSP 1 Score: 211 bits (536), Expect = 3.120e-56
Identity = 128/343 (37.32%), Postives = 198/343 (57.73%), Query Frame = 3 
Query:  261 LSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPG-SEPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSPTLTLIDLPGITHNSAGSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVR--PGCGIRAKLRME-PGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAGLEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            +S +L  +E +R + Q  Q + +PGVVV G QSAGKSS+LE + G++ PR QN  TR+P VL++++ P  +E  A++  D+   +  K   + D+   I +LTD+     A +    +Y+++VR   P L+LIDLPG+THN+   S +IH  TV+LVK++IE E +VIL VIPAM DF NAE + LA +YDP+G RTLGVVTK D+        I  K+ M     VRL  GF  VVNR+   ++     ED+   E   F+ +  +  L    WG   L+ ++  +Q   V + +PK     ++R  +L +EL  +P     + + ++ F + +  I++DL+
Sbjct:   24 VSKKLGLMESVRHVCQAVQ-IPLPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCVLTMLTDPTVNESFALVSMDSSF-TDAKRCAVADVEGRIKQLTDQHTTGAAFISREALYIRVVRRDGPQLSLIDLPGVTHNAEKMS-NIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGNAEVVKLAREYDPEGIRTLGVVTKCDDAANAEASDIVEKVTMSRDSDVRLAFGFHCVVNRSQKNIDEGMSREDLWQKEEKTFTASERLRKLPASNWGTLRLMEKVAKIQEARVDECLPKIKESVRQRTIQLREELRSLPAQAEAEGDQFKLFNSTVRLIKDDLQ 363
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A820W219_9BILA (Hypothetical protein n=8 Tax=Rotaria TaxID=231623 RepID=A0A820W219_9BILA)

HSP 1 Score: 218 bits (554), Expect = 9.660e-56
Identity = 132/351 (37.61%), Postives = 214/351 (60.97%), Query Frame = 3 
Query:  237 IDEEIEKSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSI-EIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSP-TLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAG-LEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            ++E   K  SG LSA++++R +L  N+++ +P ++V G QS GKSSVLEA+ G++LPR QNI TR PL L + S    E +A+I +        +++ ++++IS  +  LT E+AG+G  V + PIYL + +   P  LTLIDLPGIT N   G  +DIH   +NL+ ++IE    V+L VIPA  DFA +E++ LA ++DP   R L  V+K D    G   +  L   PG ++L LG IAV+NR   E++ +   E+++  EA+FF  + E    L  E+ G D LV ++  +Q + +R  +P+ + + +++I+E T EL ++P   T++ + W  F+++I+A RE ++
Sbjct:    3 VNELNTKESSGLLSAVDRMREILH-NEKITLPEIIVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRMKSTANIE-YAIIRNSKRSEDAAETLNDMNEISNAVTRLTKEIAGEGTNVSSTPIYLTVYKRHMPYDLTLIDLPGITRNPLPGQPKDIHAQILNLINKYIEPVTAVVLHVIPASVDFATSESMKLAKEFDPQCLRQLIAVSKIDKYDKGIAEKL-LGRGPGAMQLKLGCIAVLNRNQDEIDENISFEEMKKREADFFLKHHEAFQYLPDEFKGIDQLVKKLAIIQQDRIRSTLPQVIEELRKQIREKTLELKNIPIPMTSEQDCWMKFQSMINAFRESIR 350
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A820M3S1_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820M3S1_9BILA)

HSP 1 Score: 213 bits (541), Expect = 2.800e-54
Identity = 131/350 (37.43%), Postives = 209/350 (59.71%), Query Frame = 3 
Query:  243 EEIEKSLSGEL-SALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSP-TLTLIDLPGITHN-SAGSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRME-PGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEV-AGLEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            EE+    S EL SA++++R +LQG++ + +P +VV G QS GKSSVLEA+ G++LPR QNI TR PL L +     +E   +  S     +K   +++ +I+ E+  LT+++AG+G  V ++PIYL + + + P  LTLIDLPGIT N   G ++DIHT  + L+ ++IE    V+L VIP+  DFA +E+  LA ++DPD  R L  V+K D    G  I  KL  E  G ++ +LG +AV+NR   E++++   E+++  E  FF  + E    L  EY G D LV ++  +Q   +R   P+ + + +++I+    EL  +P   TT++E W  F+++I   RE ++
Sbjct:    4 EELNSKDSRELLSAVDRMREILQGHK-ICLPEIVVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRMKVTTDNEYAIIHNSKTSEDTKKTIVDMKNIADEVIRLTNDIAGNGINVSSDPIYLTVYKRNIPYDLTLIDLPGITRNPQPGQAKDIHTQILTLINKYIEPSTAVVLHVIPSSVDFATSESTKLAKEFDPDCERQLIAVSKVDKYDKG--IAQKLLGEGSGSMKFHLGCVAVLNRNQDEIDSNVSFEEMKEREKQFFIKHREAFQNLPDEYKGVDQLVKKLAMIQHNRIRSTFPETIEELRKQIRAKKLELKHIPMAMTTEHECWTKFQSMIDTFRESIQ 350
[Close]
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Match: A0A817L8Z6_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817L8Z6_9BILA)

HSP 1 Score: 213 bits (541), Expect = 3.370e-54
Identity = 130/345 (37.68%), Postives = 206/345 (59.71%), Query Frame = 3 
Query:  255 KSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGKSI-EIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSP-TLTLIDLPGITHNSA-GSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAAKYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTPIEVEADTPAEDVRAGEANFFSTNPEVAG-LEKEYWGFDTLVARIVAVQAEMVRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIREDLK 1277
            K  SG LS ++++R +L  N+ + +P +VV G QS GKSSVLEA+ G++LPR QNI TR PL L + S    E +A I S      + K++ ++ +IS  +  LT+E+AG+GA V + PIYL + + + P  LTLIDLPGIT N   G ++DIH   +NL+ ++IE    V+L VIPA  DF  +E++ LA ++DP   R L   +K D    G   +  L    G ++L LG +AV+NR   E++ D   E+++  EA FF  + E    L  E+ G D L+ ++  +Q + +R  +P+ + Q +++I+E   EL ++P   T++ + W  F+++I A RE ++
Sbjct:    9 KESSGLLSVVDRMREILH-NENITLPEIVVVGDQSVGKSSVLEAISGIQLPRAQNICTRCPLELRIKSTTDIE-YATIRSGESSEDEAKTLYDMSEISSAVTLLTEEIAGEGANVSSTPIYLTVYKRNIPYDLTLIDLPGITRNPLPGQAKDIHAQILNLINKYIEPATAVVLHVIPASVDFTTSESMKLAKEFDPQCLRQLIAASKIDKYDKGIAEKL-LGKGSGAMQLKLGCVAVLNRNQDEIDQDISFEEMKKREAKFFIKHHEAFQYLPDEFKGTDQLIKKLAIIQQDRIRSTLPQVIEQLRKQIREKKLELKNIPISMTSEQDCWMKFQSMIKAFRESIR 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig113.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYF7_ECTSI7.600e-15771.08DRP, dynamin-related protein n=1 Tax=Ectocarpus si... [more]
A0A821VT27_9BILA2.250e-5838.57Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A817FC83_9BILA2.570e-5739.03Hypothetical protein n=12 Tax=Rotaria TaxID=231623... [more]
A0A819GPP9_9BILA2.570e-5739.03Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A813LGD8_POLGL5.050e-5737.61Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A815G6I8_9BILA1.050e-5637.84Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A812V0V8_9DINO3.120e-5637.32DRP4C protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A820W219_9BILA9.660e-5637.61Hypothetical protein n=8 Tax=Rotaria TaxID=231623 ... [more]
A0A820M3S1_9BILA2.800e-5437.43Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817L8Z6_9BILA3.370e-5437.68Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig113contigP-lacustris_contig113:49705..59800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score495.0
Seed ortholog evalue3.2e-137
Seed eggNOG ortholog2880.D7FYF7
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Exons4
Model size3391
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig113.1042.1prot_P-lacustris_contig113.1042.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig113 49926..53625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.545657-UTR-P-lacustris_contig113:49704..499251622815431.545657-UTR-P-lacustris_contig113:49704..49925Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 49705..49925 +
1693493537.487611-UTR-P-lacustris_contig113:49704..499251693493537.487611-UTR-P-lacustris_contig113:49704..49925Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 49705..49925 +
1622815431.5862086-UTR-P-lacustris_contig113:53625..536631622815431.5862086-UTR-P-lacustris_contig113:53625..53663Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 53626..53663 +
1693493537.5142846-UTR-P-lacustris_contig113:53625..536631693493537.5142846-UTR-P-lacustris_contig113:53625..53663Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 53626..53663 +
1622815431.5987127-UTR-P-lacustris_contig113:57409..579911622815431.5987127-UTR-P-lacustris_contig113:57409..57991Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 57410..57991 +
1693493537.5230467-UTR-P-lacustris_contig113:57409..579911693493537.5230467-UTR-P-lacustris_contig113:57409..57991Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 57410..57991 +
1622815431.6091197-UTR-P-lacustris_contig113:58381..598001622815431.6091197-UTR-P-lacustris_contig113:58381..59800Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 58382..59800 +
1693493537.53211-UTR-P-lacustris_contig113:58381..598001693493537.53211-UTR-P-lacustris_contig113:58381..59800Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig113 58382..59800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.5590947-CDS-P-lacustris_contig113:49925..508341622815431.5590947-CDS-P-lacustris_contig113:49925..50834Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig113 49926..50834 +
1693493537.4976676-CDS-P-lacustris_contig113:49925..508341693493537.4976676-CDS-P-lacustris_contig113:49925..50834Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig113 49926..50834 +
1622815431.5721786-CDS-P-lacustris_contig113:53403..536251622815431.5721786-CDS-P-lacustris_contig113:53403..53625Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig113 53404..53625 +
1693493537.5060086-CDS-P-lacustris_contig113:53403..536251693493537.5060086-CDS-P-lacustris_contig113:53403..53625Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig113 53404..53625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig113.1042.1

>prot_P-lacustris_contig113.1042.1 ID=prot_P-lacustris_contig113.1042.1|Name=mRNA_P-lacustris_contig113.1042.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=377bp
MSLSPIDEEIEKSLSGELSALEQLRALLQGNQEVQIPGVVVAGAQSAGKS
SVLEALGGMKLPRGQNITTRVPLVLSLVSIPGSEPHAVIGSDADLGSKGK
SIEIDDISKEIDELTDELAGDGAAVCANPIYLKIVRPSSPTLTLIDLPGI
THNSAGSSQDIHTDTVNLVKQFIENENVVILVVIPAMDDFANAEAIALAA
KYDPDGRRTLGVVTKSDNVRPGCGIRAKLRMEPGHVRLNLGFIAVVNRTP
IEVEADTPAEDVRAGEANFFSTNPEVAGLEKEYWGFDTLVARIVAVQAEM
VRQFIPKFLTQSKRRIKELTKELGDMPKVYTTDNELWEAFRTVISAIRED
LKDLLTCGDDRAITGQDKASINIVPT*
back to top

mRNA from alignment at P-lacustris_contig113:49705..59800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig113.1042.1 ID=mRNA_P-lacustris_contig113.1042.1|Name=mRNA_P-lacustris_contig113.1042.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=10096bp|location=Sequence derived from alignment at P-lacustris_contig113:49705..59800+ (Pleurocladia lacustris SAG_25_93)
TCTAGAGCCAGAGCAAGCAAGAAATCAATATTATTCGGGCTATAGTCTAC
TAGTATTACCGTTCCGAAACCTTGAATCTTGTGGCCACCGTTAATCAACG
ATAACGAAGGGACCAGAGCACGAGGTCATCATGCTCATACGTATCCCCGA
GCTTTTCTGCCGCTTCCGTCCACCCCGTCCCTCCACCTCTTCTACGCAGA
CCAAAGTGTACGCTGGGCATCATGTCTCTCAGTCCTATCGATGAAGAAAT
TGAGAAAAGTCTCAGTGGAGAGCTCAGTGCCCTCGAACAGCTGCGAGCAC
TCCTACAGGGCAACCAGGAGGTCCAAATCCCGGGAGTAGTGGTGGCCGGG
GCGCAGAGTGCGGGCAAATCGTCCGTGCTCGAAGCTCTCGGGGGGATGAA
GTTGCCGCGTGGGCAAAACATCACGACTCGAGTGCCGCTCGTTCTCAGTC
TGGTGTCTATTCCGGGGTCAGAGCCTCATGCGGTCATCGGTAGCGATGCC
GACCTTGGCAGCAAAGGAAAGAGCATCGAGATCGACGATATTTCCAAAGA
AATAGACGAGCTCACGGACGAGCTGGCTGGCGACGGCGCGGCCGTCTGCG
CGAACCCGATATATCTAAAGATCGTTCGCCCCTCCAGTCCAACGCTGACA
CTTATCGACCTTCCGGGGATCACCCACAACTCCGCAGGCTCGAGCCAAGA
TATACACACCGATACCGTGAATCTCGTGAAGCAATTCATCGAGAACGAGA
ACGTGGTCATCCTCGTGGTGATCCCCGCGATGGATGACTTCGCCAATGCC
GAGGCGATCGCGCTCGCCGCGAAATACGATCCAGACGGTAGGCGAACCCT
TGGTGTGGTCACCAAGAGTGACAACGTGAGACCCGGTTGCGGCATCAGGG
CGAAGCTTCGAATGGAGCCCGGGCATGTCCGGCTCAACCTCGGTTTCATC
GCGGTCGTCAACCGCACACCGATTGAGGTCGAGGCAGATACGCCAGCTGA
GGACGTGCGTGCTGGGGAGGCGAACTTCTTCAGCACCAACCCTGAGGTGG
CCGGTCTCGAAAAGGAGTACTGGGGCTTCGATACACTGGTCGCGCGCATC
GTCGCGGTCCAAGCTGAGATGGTTCGCCAGGTAGGGGTGTAAATGAGCTG
CTCGGTTGTTTGTTGTGAAACTTGCTGTGGAGAGGAAGTTCCACGGTCTT
GTGTGGTCGTCATGTAGATCACTACTATTTTTCGAGGAAACACCCTGAAG
GACACGTTTTGCCCGTATTAATGATTTTGTAATCACTACATGTCAGCGAA
TGACACCCAAATCTGTTCGGAAACCACCAGGCGGAAAGTAAGTGCGTTTG
TGGTGCCCTTCTTCGCTACTGCCGACGCAAGTCCCCGAGTCTCGGTACCA
GTACATTGTACTGGCGATTTCCATGATTTCTGAAAACCATACATCGGCGC
TACGTGGCAGGAACGTTGTGGTTTAAACCCACTATTGATTGCTGGTGCGA
CAACCAAAAGCGAGACGCCTCTATGTGAAGGATGCACCACATCACGAAAT
AATTGTTTTTGGCTCCTTTGGTTCGTACCGGCGACGTGAGAGGAGAACAA
GCAATTTCGCTTGCAAGAAAAAACCTTCAGGCGTCCCCTGGTGGGAGGAT
GATGGTGTGAGAGTAGTCCCCATGCCACCCGCACCACATTCTGACGTCTT
GCCCGGCCACACGGTGTTGCCATACCTTGCGCGCTTGATGTGCAGTGGTC
CTCGTATTTTCTGGCTATCCTGACCGTCCCTATTTCCGAACAGAGAGTGG
TTGGTCGGTAGCCCTGTTTTCGAGCTGTGCGTTGTTTGATTTGCCATGAT
ATGTCCTATTCCCTCTCTTCTGTAGCCTGGTCGGTGTTTTCGTGCACGAT
CTCTGATCGTAGGCTATATTGTCAAACACGCATGTAGGTTCTTAAGGTTG
TGGACATTTATTCTATTGCCCCGCTCCTGTCAACCGTGAAAATGAGTGGG
AGACTGCTGAAATGCCTGTGATAAACAACCCGACGGCGAGAAACCCTTCG
AATTTTCGGTCGCAGACGAGGCAGTCTAGCGCGAACATCGAGCTTTCACG
AAGCCTTCTCGCCGATAAGATACCCTATCAATTACTTCGGAACCAAACAT
GGCCGTTCGTTGGTTTGATTTTGGGTCTTGAAATATTTCTCATTTCCTCA
TCTTCGCATGCCCATTGGATTCTCCAAGGAATACGTCACATGTCTCAGGA
ATAAAAAAACAAACGATATTAGGTTGAAGCACTTCGAAGCTCCGTAATCG
GACCACACGTACTCGGATGTTCTGACTGCCCCGAAGCGCGAAACGGTTGA
GAACGCCCAGACTTCCTTGCGGGTTTTCAGCAGCTTGCGTCCGAGCAGCC
GAGTAGAGGCTTGGAGGCGAACGATCTGCCAGGTACTTCGACCTTAACCC
TTTAGACGCAACGAAAAAAAACAAACAAATGAGCAACAAGATAGAAAAAA
AATGCCGAGTGTTGATTGGACAATGCCGACAGATCCAGTCCTGGGTGCTG
GGGAACCCAGCCTGCAAATTCTTCCCACTCTGCACTCCAAGAGCTCAAGC
ATCGCGATGCGATGGGGACAAATGATAGGGTTTCAAAGACCCAGCGTCCT
AAGCAGTTCTTGAAAAGCGAAAAAGAATCTCGAGCTACAGAGGAGCCGAG
ACTTCGACCTTCAAGCTCAAGGTTTCCCAGTAGGTCCTTGGACTTTTCCG
AAACACTGACCCTGGTTGCGACGTTCACCAAGGCACACCTCGTAGTGGCA
ACTTCGAAAAAACCCCGATAGGGACAAAATATGTCACCGTGTCCCAAAGA
GGAAAGTCATCTGCTGGCACGTCTGCATTGCTTCGACTTGGAAGCCTTTC
TTTCTCATCCACGATATGTTTTGGTCCGCACAAGAGTTGACCTTTCTTAT
TTGGTTTCAGACACATTTAGAATCCACGCAATAGTGAATCACCCAACAAA
TTCTGGTCTTGCTCGCCCCCGTCATCATGTTGTGTTCCCCAGCTTTCTTA
CTATTATTCACGGTTCTGGCTTGCATTCGCCGGTTCTATGGCATTTTTCG
TCGTATAGACTGGTCACCGAAAGCAACATCACAAAGCAACAGAAGAGGCT
TGGACATGCTTGTTTGTTCATTATTCACCACCTCGGGGCTGCTAACTGCT
GTCTATCACTTGTTTGTCTTCAGCGCTATCGCTCCATGGGGGATGCGGAC
CCCAGGAATCTGCTTGTATTCTTCTGTAGAGCGTAGGACCTGCGTTAAAC
GTTAAAAGCGAGGCCCACGTCTGTCTATTTTGCCCACGCGACCGGAATAT
CGGGCCATAGTTCTTTCGATGAATTGTATTGTTCACATCTTCTTGAGGTA
CCTCGATCTTGGAAGACGCCTTCGAGGGTGGGCTTGTAGGCTCGCCTTAC
CACGCGACAGAAAAGCCTTTGCTTCGATTTTTCTCCCAATGCAGCGACAT
GCCCCTGGTGTGCTATGGTGTCCTGGCCAAGCCTGAAACTGACAATGACT
GGCATGGTTTTCCCGTACCTTCTTTGCGTTTTCCACTTTCTCAATTTATT
ACGAAGTTTCTCACCCAGTCGAAGAGGCGCATCAAGGAGCTAACCAAGGA
ACTTGGCGACATGCCCAACGTACCTTTTTCGCGTTTTCCACTTTCTCAGT
TTATACCGAAGTTTCTCACCCAGTCGAAGAGGCGCATCAAGGAGCTAACC
AAGGAACTTGGCGACATGCCCAAGGTGTACACCACCGACAACGAGTTGTG
GGAGGCGTTCCGCACGGTCATCTCCGCAATAAGGGAGGACCTCAAGGACC
TTCTCACGTGTGGTGATGACCGCGCAATCACCGGTCAGGATAAGGCGAGC
ATCAACATCGTCCCCACGTGACAGGGATGTACAAGGCCTATGCAACCAGG
ATCCGTCAGGTAGGTTGTCTGAATTTATGTCCCGCCGCACCTAATGGATA
TGTCCGTTGCCAAACCCGAGCAAAACCCGAGCATTCCGTGATTCGCTCTC
TACCTGGTATCGTTGTTACGCATGTTTTCGCTGCACTAGAAAAGGCGCCA
GAGTACCAGGTATTGTCACAAATCTCTCGTGCATCGCACGTTTGAAGACT
AGTACGACACACCTTGGCGCAATCAAGAGGTTTTCCCAAATATTATGCAG
CCAGCCGTTGTTTTGTCTATTTGCTAAGGAGCAAAAAACGACGACAGATC
CATGTGCTCGCCGCTTTTGGTTGATGTGCAGGTGTGAAAAGAGCGACAGG
GGGTTTGATGTTGGTCGCCGCTATTAAATAGGAAACCCTAGGATCGCTCG
TGAACCAGCCACTGATACATTCTCTGCGCGTGTAAGGCGGCCGTTAGCTT
TCCGCCGTGCAAAGGAGAAAGGAGTCGTCTCGTATTGGAAAAGCTTCCCC
GTTAGGATATTAAGCGACAAATGGGCGAGGCATACGGAAAGTGGCGAATG
TGTCGGACACTTCATACCGCTCCTTGTTTCCTCACAAGGGACACTGACCA
TGTATATCGGCTTGCAGCGACGACAAGCGATATTGACATCGCTACATCAT
GTTCTATATCAGCTAAAAATAGTCGTCATCGTCTGCCGTTGTTTAGTCTA
CTTGTTAGAGAAAAGTGAAAAAAAAACATTTCCCGGCGAGCGCACAGCAC
CAAGAAGCAGAAGTGAAACACACCCTCCTCCTCGTATAGTTATACCCGCC
TGGGAGAGAGACACCACTCGCACAACTCCCAAGGTGCTAGGGTATGCTGG
TGTCACCTGTTTGCCGGTGTGCGGGCGAGGGGACTACACACAACGTGAGA
TGATACAGAACTCCGCAATGTAGACCGATGGCAGCAAACGTTTTTGTACT
GACTGTGTTGTACTCGCCACCACAGACCCGTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTCTTCACATTAAAAACCATCCCGGTCTCTCTATCCAGTACC
TCCGTCCGTCGCAATCTTTCCGTACAAATCCAACACTTGACGCGGTCAGT
TCCCGTGGTCACAGGCTGACTTACCTAAAAAAGGTATACGAAACAAAATG
GACCCGAACGGTGCGCAGAGCGATAACAAAAACCAAAGAGTATCCAAAAT
AAAAATAAAAACAAAGCACTGCTGCTGTAGCAGTATTGGAGCCCTCCGCC
CCCCTCCACACGCTATGCGAAGGTAGAAACAAAAACAAAAACAGAACAAA
CTGGAACATCACCAGCACCAATCGGGGAGCATATAATATGCACCCCCTGA
CTCTATCTTGATTCCCCTACAATCAATGCCGGGGTGTTCCGTGCCGGTTT
CTCCCCGGTAGAGGCACATCCTACATCAAGTAAGTCCTCCTCCTCACCGA
CTATAGACGTACAGGCATGATGCAAAGGTATGGGAAAGAGCCAATCAATG
ATGATGCGAGGCAGAGCAATAGGCAAGGAGACAGGGGAAACATTCCATGG
TACCACGCAAAAAAGCAAAAGAAAGCAAACATGGCCAATCGCAAAGAAGA
AAGGCAGTCAGTACAGACATGTACATCATCGTTCCGGTGATGGAATGGTG
CAGCGGATGGGGGAAGGGAGGGGAAACAGAACAAACTAGTATGGATTTCA
GTTCGCAACATGTCGTGCCACCCGGTCGGCCTCTTCTCGCTTGCTTTCTT
CCTCGCCGTTTCCTTCCGCCCCCTTCTTCCCGTCTCGTTGCTTTGCGGCG
TGTCTCTACTATTTCCTGGTCCCCCGCCGCCTCGCTTGATAGCTCGTAGT
CTGCTAGCCTTTTCTTCGTCCTTGTGCCACGATGCCATGAACCTCTCAGC
TCCCTGTAGTACCCTAGGTGCCACGATACTTCCCCGTTCACCTTCGCCGC
GTCCGTCCAAGGCAATTTCGGGATTCCAAAGAAGCACGGTTCGTCGGTCG
TGGAGCCGTGTGTGGCCTCGAACGCCTTGAAGTCATCTGTCAGGCACGCC
ATCCAGTTCTGCTCCGGTTTTCCCCTGCCCGGGTCCTTCCCCCCCCACCA
ACTCGCCCTCCATCAGTCGCTTCGGGAGGCGTCCGTCCGGCTGTCTTGCC
AAGGCCCCCGCGAACAACAGACGCCGTTGACGAACAGTGGCTTCCACGCT
CTGGCAGCCGACTCTTCAGCGCCTGGGCATATGACAGCTGTCGGTGGTGC
CCCGCTTGTGTCGGTATCCAATAACTCGCAGAAGTAGACGGTGGTGTGTC
GTCCGCAGGAGTCGGTAATGGTCGCCACGTGGGGCCCATGTCGTGCACCC
GTACAGCAGTGCTTCCATCGCCTCCGCCTGCAATAAGCGGGTCTTGAGTT
GGAACGGCGCTCCCGGCCTGTCGAAGAGCTCCCGGGCATACCGCCTGATG
CACGCCCATGCTGCCTTGCTCCGGTAGTTGATTTCTCGGGAGAAATCGCC
ATGTTCGCTGACAAGGCCCCCAAGTATCGGAACTCGGTCGTCTGCGTGTA
CTTTTGGCCCGCTGCTTCGATGATCAGCGGCGGCGGCGGTGGTGGCGCTG
GCTGTCTCTCCTTCACGCGCAACAAGATGGTCTCCGTCTTCTTCTCCGAC
ACCGTCAGTCCGAACTCCCGCAGCACCTCCATTCGACAAGGAGCATATAC
GAAAACATCTCTGCGTGTTGATTATACGAAGAAATCGTTTTTCCGCGCCT
CGATATATACGAAATCATTTTTCCAATATACTAATCGTATAAAAAAGCGG
TTCGATACAAATGACCCTTATAAATATGAATGAATTCGGATAAAAAAATC
TCACAGGAAGCAATCGTTTTTGATCATTTTTATTTCCGAAATTCGTTTTC
GTATCGTTTTATACGAATGAATTCGTAGTATAAAAAGTGATGCGATAGGA
ATGGGCCTTTACCCATATTATTCTTGCTTCACTGCTGTCTTGCCTTTTTC
TGAGTCAGATATAGTCTAGCATCCATTCGCGAACGACTTCTTCTTCCGTG
GGGGTTGCGTTTACCCTTTCATCCGAATTGATTATTTTTCGGTTCATCCA
GTGGATGGATATGATTTCCCGGGGTTTTCGTGTTTCCTCTTGCATATCAC
TTTGCGCTTTCGATTCATATATTCTTCTTTCGCTTTCTGTCGTTCATGGC
AATTTCCCTTGCATCCGAATTCATTTTCGGTCGAGTGTCTATAACAATTG
ATTTCATTGTACACAAACAACACCCTTGCATCCCTGAAACAAACGTGGAA
TTCATTCATGTCGGTCTTCCGTTCAGAAATGTACGTCTCACAGACAATGC
ATCACGCCCACCCTCGGGACAATTCCACTACGCACGCTCGCTTCGCCTCT
CTTTTCCTCTCTCCACAATAACATTTGTTCGATTGCAAGTCTTGCATAAA
TGTCTACGGCGGCAGCATCACCCATGCAGTCTTTGTCACGCGAGCAACAT
GTTCTCGTAGTCACCATGCATCACGGCCATCATGCAGTTGGTGTACTACA
CACTGAAGTTCAAACTAGTCATCAATATTCCGCTATTATTCAAGGTGCCG
CTGCATCGAGCTATTATCCGATGAGTGATGAAGGCTACAGGGGACCCATT
GCACAGTTCGGTATATGTGCTCCAAATCAATCTTCCCTTTGTACCAAATC
CGGTTTTAATGTGTGTACATGTCCGTCCCCCGCCCTTACCATTCCACTGC
GCCAGGAAGTTGTCCCGGACTATTTCTCGGATGAATATCATAACAAGTCT
CGCGCTGCTTTCCAGCGCGTGGACGGGATGGCCCTTTCGAACTTACTCGC
TGGACGCGTGTTCAACGCGCTCTCCCGGGAAGTCTTCTCGGGGGACCTCG
GCGATCGCTCGGAGGAGTTGATCGAAGGTGTCAAGGTCTACATGCAAGCC
ACACTTGACACGTTGTGCGACCGCGCCTGCGGGTCCCATCCTGCTCTTCT
CAACGAGCTCAAGACGAACCTGGTTGAGGAGTTTATCGACAGGAAGGAGG
CCCTCACGAAATCCGCAGTGGGCACCATCATCGAGGCGGAGCTAGGTTGG
GTGTTTACTCAAGATTGCTCCTATGAGGCTACCATGCGCCATGTCCACGA
CATGGTGATCTCCGTCAGGAAGAGCAAGGTAGAGCACGACGCCACACATG
GCTGTCTGAGGGATGGAAACGATGTGCAGCCTACCCTCAAGCGGGCGACC
ACCACCGACGGCGTCCCCGCCCCGTTCATCGAGAAGATGGCCGAAAGCGA
ACCAATGAGTGAGGACGATAGTATCCGCACTCTGCAGGTGAGATCTCGCT
GTGATTCGATAGGATATATTTACTGCTGTACGTTGCCGCGCTGGACGGGC
GCGAAAAAGGTTTCATCAAGCCTACCGTAATGTTGTAATAATGTAAGTGG
CCGTATCTTTGTGAGTAAGAATGATAATAGTAGCGTATCGCAGAACGTTG
TGAGGATCTTTGTCTCAGCTGCTACAGCCCACCCTCTTCAGCCTTTATGG
GCATCTACGCTTGCTTGGTGATGGGTTTCTGGCAAGAGTTTCTCGTGAAG
AACTTATAATGGCACCACCACATCCAACGAACGAAAAATTTCCGCCACGA
CTGTGCCATAGTCTATTTGTGTCACCGCCCGCAATAATATAATAAAAGCG
CTGATCGACGAAAATCTCGCTCAACAGGTAAGCCTGTATGCCTACAGCGA
CGTCATTTTCCGGCGTCTCTTCGACAGCGTGCCGAAACAAGTTCACCTTT
TTCTCGTCAACGGCATCTGCGATGGGTTCGTGACTTGGATGCTAGCCAAG
GTCGATACAACGGACCTGCAGAAGTGGCTCGCCGAGGACGTACATTCCCA
GCGCAAGCGCAGGGAATTGGAGAGCAAACTCTCCCAGTTCAAGGAGGCTA
TCGCTATCCTTAAGTCCTCAGGCGGAAGCGCGAAGTAACCCACGAACTGA
GTTGAGGCTTTTCCCCCCAGTTCTTCCGCGACAAGTAAGGGTAGTTTACG
ACAGACACCGACAACCTAACGACGTAAGAGGGAACAGCTTCAGACATCGT
CCATCGGGTTTCCATCCCACAGCAGTCAGTTTACTTTGTTATCAGAGCGG
ACTACGAGAGGAAGAAACATTCCTGAGCACTGCTGCTGCCAAGCGCCGCA
TCACACAATGTAGACGACGTTGCATCATGGGTCTTGAGTGAAATGAAAGG
GGGAGTCAATGCTAGTAGTTTCCTATGCTTGGATGTGTGGAAGACTAACA
TCCCGCTGTGGGCTACAAAAAGTATGCTCAAGGGATGAAAATGCCCTAGA
AGATACAGTAATTGCCAATCCAAACATCTGCGCTTCAGGGGGTATCAGGG
TTCCATGGACGGGATGGCGGTGTGATGGATTTGCGTGCTCGTGAGCACCT
CAATGATAATATTCTAAAGAGTGCGTTTCTTCTATTATTGAGGTGGGGAA
CGAGTACATGTACGCACGTATGGGAATCATTTATTATGCGCTACTGTTAA
TCATCTGCGATGACTACCTGTTGGAATACTCAACTACACTACTCACTGTA
CTTCTCGTGTGACAGAGTGGTCACATAACCTACAAAGTAGGGTGTGCGCA
CAATATAGTAGTCTACGTGAGGAATGCTTGGTATCTGCCGCAGCGTACAA
TATTTTCGCTTCAGTAGCAGTAAGTAACAGTAGGACAAGCAAGATTAGGA
CGCTACTATACCCGGTAGATAGATAAGGTTGTTCGAGACAGCAGTACATC
ATGGAATTCCATATGTTTCGGCGGTGCAAATAGACCAAAAGGCAGATGAT
GAGGCTAGTGCACCAGGGGGCAGATACAGGGGAGTTTACGGGACATCGAC
CATACGTATTCGTTTTGGCACGGGAAGATGCCATCGTCGGCTGTTGAGCT
GGATAGGTCAGCATCCCATTGCGCAAGGTTTACAATTCCAAGTATGTATC
CCGTCGGGTTCAGAAGAAGGTGGGGCACGAGAGTTTGTTCACAGACAGGG
TGGCCAAGGATTTTGTGCTGCTAAAGTCGGACATACATCGGGTAGTACTT
AGTTTTCCGACATCATTTTGAACTTCAAGTAGACTACATGATATTG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig113:49705..59800+

>mRNA_P-lacustris_contig113.1042.1 ID=mRNA_P-lacustris_contig113.1042.1|Name=mRNA_P-lacustris_contig113.1042.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2262bp|location=Sequence derived from alignment at P-lacustris_contig113:49705..59800+ (Pleurocladia lacustris SAG_25_93)
ATGTCTCTCAGTCCTATCGATGAAGAAATTGAGAAAAGTCTCAGTGGAGA
GCTCAGTGCCCTCGAACAGCTGCGAGCACTCCTACAGGGCAACCAGGAGG
TCCAAATCCCGGGAGTAGTGGTGGCCGGGGCGCAGAGTGCGGGCAAATCG
TCCGTGCTCGAAGCTCTCGGGGGGATGAAGTTGCCGCGTGGGCAAAACAT
CACGACTCGAGTGCCGCTCGTTCTCAGTCTGGTGTCTATTCCGGGGTCAG
AGCCTCATGCGGTCATCGGTAGCGATGCCGACCTTGGCAGCAAAGGAAAG
AGCATCGAGATCGACGATATTTCCAAAGAAATAGACGAGCTCACGGACGA
GCTGGCTGGCGACGGCGCGGCCGTCTGCGCGAACCCGATATATCTAAAGA
TCGTTCGCCCCTCCAGTCCAACGCTGACACTTATCGACCTTCCGGGGATC
ACCCACAACTCCGCAGGCTCGAGCCAAGATATACACACCGATACCGTGAA
TCTCGTGAAGCAATTCATCGAGAACGAGAACGTGGTCATCCTCGTGGTGA
TCCCCGCGATGGATGACTTCGCCAATGCCGAGGCGATCGCGCTCGCCGCG
AAATACGATCCAGACGGTAGGCGAACCCTTGGTGTGGTCACCAAGAGTGA
CAACGTGAGACCCGGTTGCGGCATCAGGGCGAAGCTTCGAATGGAGCCCG
GGCATGTCCGGCTCAACCTCGGTTTCATCGCGGTCGTCAACCGCACACCG
ATTGAGGTCGAGGCAGATACGCCAGCTGAGGACGTGCGTGCTGGGGAGGC
GAACTTCTTCAGCACCAACCCTGAGGTGGCCGGTCTCGAAAAGGAGTACT
GGGGCTTCGATACACTGGTCGCGCGCATCGTCGCGGTCCAAGCTGAGATG
GTTCGCCAGATGTCTCTCAGTCCTATCGATGAAGAAATTGAGAAAAGTCT
CAGTGGAGAGCTCAGTGCCCTCGAACAGCTGCGAGCACTCCTACAGGGCA
ACCAGGAGGTCCAAATCCCGGGAGTAGTGGTGGCCGGGGCGCAGAGTGCG
GGCAAATCGTCCGTGCTCGAAGCTCTCGGGGGGATGAAGTTGCCGCGTGG
GCAAAACATCACGACTCGAGTGCCGCTCGTTCTCAGTCTGGTGTCTATTC
CGGGGTCAGAGCCTCATGCGGTCATCGGTAGCGATGCCGACCTTGGCAGC
AAAGGAAAGAGCATCGAGATCGACGATATTTCCAAAGAAATAGACGAGCT
CACGGACGAGCTGGCTGGCGACGGCGCGGCCGTCTGCGCGAACCCGATAT
ATCTAAAGATCGTTCGCCCCTCCAGTCCAACGCTGACACTTATCGACCTT
CCGGGGATCACCCACAACTCCGCAGGCTCGAGCCAAGATATACACACCGA
TACCGTGAATCTCGTGAAGCAATTCATCGAGAACGAGAACGTGGTCATCC
TCGTGGTGATCCCCGCGATGGATGACTTCGCCAATGCCGAGGCGATCGCG
CTCGCCGCGAAATACGATCCAGACGGTAGGCGAACCCTTGGTGTGGTCAC
CAAGAGTGACAACGTGAGACCCGGTTGCGGCATCAGGGCGAAGCTTCGAA
TGGAGCCCGGGCATGTCCGGCTCAACCTCGGTTTCATCGCGGTCGTCAAC
CGCACACCGATTGAGGTCGAGGCAGATACGCCAGCTGAGGACGTGCGTGC
TGGGGAGGCGAACTTCTTCAGCACCAACCCTGAGGTGGCCGGTCTCGAAA
AGGAGTACTGGGGCTTCGATACACTGGTCGCGCGCATCGTCGCGGTCCAA
GCTGAGATGGTTCGCCAGTTTATACCGAAGTTTCTCACCCAGTCGAAGAG
GCGCATCAAGGAGCTAACCAAGGAACTTGGCGACATGCCCAAGGTGTACA
CCACCGACAACGAGTTGTGGGAGGCGTTCCGCACGGTCATCTCCGCAATA
AGGGAGGACCTCAAGGACCTTCTCACGTGTGGTGATGACCGCGCAATCAC
CGGTCAGGATAAGGCGAGCATCAACATCGTCCCCACGTGATTTATACCGA
AGTTTCTCACCCAGTCGAAGAGGCGCATCAAGGAGCTAACCAAGGAACTT
GGCGACATGCCCAAGGTGTACACCACCGACAACGAGTTGTGGGAGGCGTT
CCGCACGGTCATCTCCGCAATAAGGGAGGACCTCAAGGACCTTCTCACGT
GTGGTGATGACCGCGCAATCACCGGTCAGGATAAGGCGAGCATCAACATC
GTCCCCACGTGA
back to top