mRNA_P-lacustris_contig1129.1036.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1129.1036.1
Unique NamemRNA_P-lacustris_contig1129.1036.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1129.1036.1 vs. uniprot
Match: A0A6H5KTI7_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.010e-38
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  143 MAEEWNGFDDGDVMLDFEGRTFRVHRAIVAQASPVWKTMLTGSFAESMEDKIQFDGDNPEVARLCVELIYCAMYPP-FDWTDVERRVKCDEEGFDAFVDKYDLRGVKRVVGHMREQT 490
            + EEW+G+DDGD+++DF GRTFRVHRA++ QASPVWK MLTG FAESM D ++FDGD  E ARLC+ELIY        DW  VER V  D    DAF+DKYDL GVK  +  +R +T
Sbjct:    2 VEEEWSGYDDGDMVIDFGGRTFRVHRAVLPQASPVWKAMLTGEFAESMGDPVRFDGDASEAARLCIELIYSTFAEGNIDWRGVERPVNSDRTALDAFIDKYDLVGVKCSMEQIRGKT 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1129.1036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTI7_9PHAE3.010e-3858.97BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1129contigP-lacustris_contig1129:6712..13987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1097
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1129.1036.1prot_P-lacustris_contig1129.1036.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1129 7142..7666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.350063-UTR-P-lacustris_contig1129:6711..71411622815430.350063-UTR-P-lacustris_contig1129:6711..7141Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 6712..7141 -
1693493536.799524-UTR-P-lacustris_contig1129:6711..71411693493536.799524-UTR-P-lacustris_contig1129:6711..7141Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 6712..7141 -
1622815430.3714411-UTR-P-lacustris_contig1129:7666..76871622815430.3714411-UTR-P-lacustris_contig1129:7666..7687Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 7667..7687 -
1693493536.8161576-UTR-P-lacustris_contig1129:7666..76871693493536.8161576-UTR-P-lacustris_contig1129:7666..7687Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 7667..7687 -
1622815430.3824782-UTR-P-lacustris_contig1129:13866..139871622815430.3824782-UTR-P-lacustris_contig1129:13866..13987Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 13867..13987 -
1693493536.8281226-UTR-P-lacustris_contig1129:13866..139871693493536.8281226-UTR-P-lacustris_contig1129:13866..13987Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1129 13867..13987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.360384-CDS-P-lacustris_contig1129:7141..76661622815430.360384-CDS-P-lacustris_contig1129:7141..7666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1129 7142..7666 -
1693493536.807932-CDS-P-lacustris_contig1129:7141..76661693493536.807932-CDS-P-lacustris_contig1129:7141..7666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1129 7142..7666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1129.1036.1

>prot_P-lacustris_contig1129.1036.1 ID=prot_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MAEEWNGFDDGDVMLDFEGRTFRVHRAIVAQASPVWKTMLTGSFAESMED
KIQFDGDNPEVARLCVELIYCAMYPPFDWTDVERRVKCDEEGFDAFVDKY
DLRGVKRVVGHMREQTRQRVNEKQRLESRVVKIAKEKRRMELLWDQEKRK
TALLESRVVKIATRPGFFPTKKFL*
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mRNA from alignment at P-lacustris_contig1129:6712..13987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1129.1036.1 ID=mRNA_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7276bp|location=Sequence derived from alignment at P-lacustris_contig1129:6712..13987- (Pleurocladia lacustris SAG_25_93)
CCGTACGCAATTCCGCTTTTAACCACATTATTGGAGGGGGCGGCTGCGGG TTCACGTGTTCGCGGTCACCGCTGTCCAAAGTGGTTCACAGTCCTCCAGC GATCACTCCCTCGACAGACAGGTACGTGTGATCACCATGAACACGCACAA CAGGTTCGCACATCATGATGTCCTACTACTTGTTGCATGAATCCTCTTCG CTCAACTCAGTTCAGACTACCCGGACCCATCAGCGACAGCAACACAGATG TGATCCAAACCAAACGCAATCAATCGTTCATTAGTCTTGTTGCTTAGACA CAACTTGTCAACAACAGGACTCCATTCCAAAACAAACCACTCCTGCTACC GGAGTCGGGACACAAAAGTTATATTTCATCAGTAGTAGGCAAAAGGCCCC GGCTGTCCCGGCACACTCGATGAGTGGCAGGTTGTCCAATCACACCAATT CTTGAGCTCTCCATCTCCAGACTATTGGTACCACCGTGTCGCTTTCTCTT GTTCTCTCTCTCGTACCATCTCTACCCTTTGCCATCACGACACTGACTTG TGGCCGGTGTGGACCCATTTTCTTTGTTTTCAAACTTCAACCTTATGACG TCAGGGGTCCTTGTGGTGGTATCTGCACACGATGCTGCTGGAAGCGCAGT CGAGACTTCCTACAGTACATATTTCACAACATTTGACCTCGGTTCTATGC CAGACAACACACATGTGTGGTGGAAGAAAGATCAGGGGAGAGGGTTACGA AAAGGTCGGTTGACACAAGTGCATGGATGGAGACATGAGAGCCGGCACTG AAAACAAATCAACGGCTCAACAAGACACACGGCAGTCAGTCCGCGAAAAC ACACACCTACAGGCCCCACAACGTAGGCCTACCGCCACCAACCTCCGAGA TGATCAGGCTAGGGAAGCGCAGTGGTCTCTCTAAATGTTTATGGCGATCA GCCCTTGCAACCGTGCGGTGTGAGCCAGGCAGAGTGGGAGGTGGGGTGCT TGTGTGTTGGCAAAAATGTCAAGTACGACGATGCCCGCTGCTTGCTCGGA GGGTGGATGCTGTCTCTGTTTCCCGTGTTACCGAATGCACGAGCAGCCCG CTAACGTGCAACAGCGTGGCTTTTGGTAGGGTATCTAGCGGTGTGTGTTG TAGAGCTGCAAGACAGAGTCATGGATAGGTTTCTCCTCGGAGTGGGTGTT GTGCGTGGACAGAGAACAGAGAGAGGGTAGGGTTGTACTTCTATATCGTG GAGAAGGACGATTCTCGGAAGTTTCTTCCATGGCAAGTTCGAAATTGAGC CGGTCTGGTCTTCGCACGTCAAAATGGAGACCAAAATCGGGTTTCATTTT GGTTTCATTTTGGTCTTGAAGACTCAAATCGAATTGGATTGTCGCAAACA CCCTATTGCCCGCGTGTCTATTTCACCCGTCTGAGGCTGGGCTCCATTTC AGTTTCCGCTGTCGCTGTTCTATTGGCCCATCCGTGTCAACTCCCCTCCC CTGAGCCTTTGCAGAGTCTCCAGCTCTCTTATCTTAAGCGCAGTGGTGTA CGGAGAACAGATCGCGGGTTGTTTTTGTCCTCGCAGAAATGTGCGATGTG TGTAGCTTTCAGTCCCTTGCCAACGTGCACTGTATGTGGTTGGTTGTTAT CTATTCCTGCCTCACCCCAGTATTCAAACACACATCGGGCCCTCTCCTGA AAAAGAAATCTTGTAGACCACAAAATACTATGAACAAGGCATACACGGGC AACCGCACCCCAATCGAAGCCGGTGACTGTCCATCCTTAGGTTTGTCCGC GAACAAAAAGCCCATCCTCCCTCACAGACATTGAGGGAACTATACAAATA AATCAAAACGAACAAACATAATACAAAACAATACAAACGGTATGGCGCAC ATCATGTACGGAGATATTGTAGGCTCCTTGTCGGATGTCCCCATGTTCCA CCACTCCATCGGGAAGCCCCCTTTCTGGTTCATCGCTAACGACATACTCA CAATGTGGTCGGTTACGAGAACCATCAGGCACCAAGGACGGTAAACCTGA CGATCAAGCACGAAGGGGGAAATCAGAATAGAAGTGAAGTCGTACAGTAG CAGTCTGGCCGGACACCGCGCGATTCATTGCTTCTCTCGAGTTACGCCGT CACTAGGTAGTGTGTGAAGCTGTAGCGTACCGAGATCTTCCAACGTGCGC GTGTCTATATCTTGGTCATCCAGAACCGACAGCTTTGCTGACAGCATTAT TTCCTGCTCAGCCACGCTTCCGATATCCGCAACAAACACCACGGGCGACA CCGCTTTGTCAAGCCAAGCTTCTTATGTTTTGCAGAGAGAGGCTCCATTT TTCGGCCATAACTCCCTACAAATTGTACCCAGATCTAGTGAACTGTAACC GCGCCACAGCTACTGTAGTGTCATCCCTTGAGGACACTATCGACATCAAA ATATGCCATGACATCATCTGCGGTGCTTTCTCCGAACTGTCCTATTGTTT GGTGTTCTTTGGGCCGAAGAAGGGAAGCTTGCGCAGCCGTAGCACAATGG GCTACCACTAGCCTCTGCGGTATCCCCATACATCTCTGCGCCAGTGTACG GTGTTTGTGGGCGATTTCGATACAAAATCTGTGAAAAAAAAATGAAAGGA CAACATCGAGGAAGGTGCGAATGCAGGGAGTCGGACTCACGGATTGGATC TGTGGAGACGGGGCAACGTTTCTGATAAAGCAACTTTTATTACGTTTGCC AGACAATTTGCATACGTTTCGGAAAAATTTACTCCATACGCCGGAGTTTA TGGCGTAGTATAATGAAGACGGTTCACCTTATCCTGGACATTGCTCAGAA TCAGAATCATGTATAACCTAGCAGTGAGTACTGCCGCTGTAAAACTCTTA TCTTTGAACGATGGGTGAAAGTCATGTCGAGAAAAAAACGTTGGTCGAGG GGTCTACGTATGTTTTCTTGTATTTGACGACGAGTTGTATGCGTAAACGA TTATTGTCGGTTTTTCTTTTCAGACTCAATATTCGCTAAACTGCAGTTCC GAATGAACCACCATGTGAGTGCTAGTTGTGAACACCACACGCCCACGCCT ACAAGCAGTTCATTCCCGCATGCGTTGCCAGCTCTTGGAACTCTTGGGTT CAGGGAGACATAGGGCACGATGTTTGTGCTGTAGTACTGTGATAAATAAT AGCCCGGGACCCCCCGGCCTCAACTGAAGCCCGCTCTCTAAATAAAACTG TTGATTGATGTTGGAGTCGTTTCCTCGCCGAGGCCGGGGGAGGAGGGTGG ACAGTAGTGATAATGACGTTCGTTGTCGCAATGTCCGTGGCGGCAAAGAG GAGTGAGGTAACACTGGAAAACCTCAGGTAGGAGTGAGAAATCCGATGGG AGACAAAAATAACGCAAGTAAGAGGAAAGAGATGACGACGTACGTGGAGG GTTTGGGCGCGAAACCGAGAAACACCATCCGGATGCACATGAAAAGGTCA TGTGCGATGCCGCAATATCCGTGGCGGCATTGATTCGCTGATTTCTGCAG CGTACAGTCTTGGTAATTTATTTGAAAAAAAGAAGAGCGAAAGCGCTACT CTAGGACACGCCAACACAAACAAACACAGAGTACAGGACGGAGAGAGAGA CTTCAAGTCTGCGCTGGGAAACAAGTGCCTGGCTACCCATCCGACGAGGT GGGAGTCTGCTTGCAGTGCCGTTGGACCTCGAGTGTTTGCTCCACAGGTT CTTTTTCGTCCCATCTGTCCTTTGAGTGCACCGCTCTCTGGGCACACAGC CTACGGGGAGTCTAGACGCTAGGCTCCCCACCCTAACCACCCACGGTATA CCAGAGTTAACCATGGGACTCGGGCGTGTTGGGGCTTTCTACGATCACAC TACAGCAGTGGGTATTGCCGCCGTTGGTGTTGAGTAAAGGTGTCTCAAGC TCACACGTATTTGGCTTAAATTTCAACGTGTTTCGGTTTCTGCGGTTATG ACAAATTCTTCAGAGGGAAAGAGAAGCTAATTCCACACTCCCTGAGCGTC GCTGCTAGAGAATTCGGGTAGAAGGAGAATGCCGTGACCTATGCCTGAGT CAAACGTCCTTCATGTCACGCGCAGACACGACTGCTGCCACTCGTGGGAC ACTTTCACACGTCCGAAGTAGAGGTGCTCTGTATCTCGCTCAAATAACCT CCAACTGGGAAGATCCGTTATGTTGCGGCTGAAATCTGGCGATCCGCAGC CAGCGCCCGGGCCATTCGAGTTCGAAAATAATGCTTGATGCAGGTACTCT ATAGGGCACTCAATTTTTTGCCGTTGAACCGCTGAAACGAAGAGACAGTT GTGCGCGGCGAGCTGTGATCTTTTGATAGAATTGGGCACAACCAAGCCAC TTGCATCTGAAACAGAGCAGTCAATGAACATGATATCACTGTAGGTTTGG CCCGGATGCGTCACCTGCGGAGTGAGATACGTGAAACATAGTTGTTTGCT CTGGGCTGGAGCGATGTGATTTTGGTTGAAGAGCATACACACGTATGTAT GCGGGTGGGAGGCAAAATGTTTTTTTCGGCGACCATGTGCATTGTTGTTG ATTGATGTTGGATATGTTTTTCAATTGTCAAATAGCCGACCGTCCCAGAT AGATGCACCTTCTTATCAACACGGTCACCAACACTTTGTTTCATCTCAAA ATTGAGCGAGATATTGAGGTTCGAAAATGTGTCTAGGGGGTGTGGTGTCC TGTAAGTGTGTGGAATGCGGCATGCGAGTCGGAATGATGGCGAAATCCTG TACCTCGTGACACTTTCTTGAACTGGGCACGCACTTGTATATTTACTGCT GGTTCGTCGGCTCCCGCAGTTTGGGGAGCGCACCTTTTCAGAGTCGAGAG ATCTTACTCCATGCTGTAGTATGTGCAAGTCTGTACAACGAGAAGAAAAA GGGGGGAATACAACATGTGTGTCTTCATGTTCCTAGCGTTAACTATAGGC CCTTCCGTGGCTCCGACCTCATGTCAGGCATATACATGTACACACATTAC AACAGGGCATAAAATATTGCAATCATCGCCTGTATTGATTTTTGTGAGCC GACCGCGCGAACGAAGAAACCGTCCTTCACTTAGCAGGTTCCATTTCCCG ACTTTCGCCAGGTAAAGGCGGGTAGGCGGGATGAATGACGCGAGTTTTCC GCGTGGCTTCCAAGTAGTACCAAGCTCACTATCCTGGAAACATGGCACTC GATCAAGCGACACGCGTCACCAACGCGTTAGTTCGAAAGCTGCAAACGTC ACTACGAATCGTTGAGCGATCCCAAATAATATTCGCTCCTGGGATCCTAG AAACCCGAATCATGGCCAGACCATGAGTGCCTCTCTCAGGTGGCATTATT ATTCTGGGTGTTCGGACACAAAATTCGTAACATTCACAATACAGCACTTT GGATGCTCTTTTTTCCGACGAAAAAACGCCACCTTCTGAATATTAACTCG ACCCCATTGCGCACCCCACACCATTTCAAAAATGGCCCATACCCAGTGTG GGCAAATTGATATGCGTTTACCCACATGCCTACCACGGTGTTTTTTTTGT ACAGACAGCACTCCAGACAGCCATACGCTGTAGTCGGCAAACATTCACGT TGGTAAAGAGTGGGACAGGGGGGGGGGATGCTGCTGTAGTCGAATGAGGT GTACGGACGTGTAGTATTCAGCCTTGTGCACGCGTTACGCTGCAGGGATT TTAGGTGCACCTCGTCGGGCTTGTGTACCCTTTTCTTGCTCAGGTTGCGT GCTCTTTAGATCCTCTGATGGCTCTAGCATTTTTGTGACCACGGACCGAG AGTCTTTTGCTAGATGTTGGGATTAGCAACTGACATACGAGTTTAATGTG AAGACAACAACAACAACCAACAACAACAACAACAACAACAACAGCCATAA ACTCTACCTCACGGCACTTCGAGTCCCTGGCATAGCGCAATCTTTGAACT GCTGCTAACACACGTGATCAATCGTATTTCCTAACAAGAAATCGAGTGAT TTGAAACGACTTCGGTTATTGTTTATGGTGCCAGCAGACACCGGCGAAAG TGCGCCCGATTTTTCATCGATTCCTCTGGATAGGTTTATATCGCCACCCG TCAGTAGGCACACCACATCTTCGCTCACTACCCGCTCGAGGACGTTGCTT GGAAACGCGGCAGAAGATGGCTCAAAGTACCTGTCTTCCTATGGCAAAAT GCGTATTCATCTTGACTTACACGAGGGACGACGAACCCCTATGCTCACAG ACAGGAAAAACGAGAAGCGATATGGCTGAGGAATGGAACGGGTTCGACGA TGGCGACGTAATGCTCGACTTCGAGGGCAGGACCTTCCGTGTACATCGGG CGATAGTAGCTCAGGCATCGCCGGTGTGGAAAACGATGCTGACGGGGTCG TTCGCCGAGTCGATGGAAGACAAGATACAATTCGATGGCGACAATCCTGA GGTCGCACGACTTTGTGTCGAGCTCATCTACTGCGCAATGTACCCACCTT TTGATTGGACTGATGTTGAGAGGCGGGTAAAGTGTGATGAGGAAGGGTTT GATGCGTTCGTTGACAAGTACGATCTACGAGGGGTAAAGCGAGTTGTGGG GCACATGCGCGAGCAAACGCGACAGCGAGTGAACGAGAAGCAGCGATTGG AAAGCAGGGTGGTGAAAATCGCAAAAGAGAAGCGGCGTATGGAACTGTTA TGGGACCAGGAGAAGCGGAAGACGGCATTACTGGAAAGCAGGGTGGTAAA AATCGCAACCAGACCAGGCTTTTTTCCGACCAAGAAATTTTTGTAAGAGG ATCGAGGAGAGAGGGAAAAGTGATCGCCAACAATGAGGATAATGGGACGG AGATCGGCGTTCGTTGGGGCAACGGCGAAGTATCGCACAACCTATGGTGC GGCAAGAAAGGCCGGTATGAATTGGAGTACGCCTGAAGAAGGAGGGGCTG TATGCAATGTGCACAAAAGCCAGAGGGGGAAACATGTTGCGGCAAAAAGC AGCCCCATGGGGGTGGTTTTCGAACGGCAACTTCGGACAGTCAATCTACA TATGCACCGTGCGTACCGGCCCTTTGTCCACTAGTTTCTTGAAGACAGAT TTGGCTGGGCTCCTGCAAGCTCTATGAAAACTAATGGGGGGGCAACCGGC TACTGCTTTGACCGCCAGCCAGTCCTAGCGTTTGTCGACTTTGAGAGTTT ATTCTTCGATGTCACGTAGTATGTAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1129:6712..13987-

>mRNA_P-lacustris_contig1129.1036.1 ID=mRNA_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1050bp|location=Sequence derived from alignment at P-lacustris_contig1129:6712..13987- (Pleurocladia lacustris SAG_25_93)
ATGGCTGAGGAATGGAACGGGTTCGACGATGGCGACGTAATGCTCGACTT
CGAGGGCAGGACCTTCCGTGTACATCGGGCGATAGTAGCTCAGGCATCGC
CGGTGTGGAAAACGATGCTGACGGGGTCGTTCGCCGAGTCGATGGAAGAC
AAGATACAATTCGATGGCGACAATCCTGAGGTCGCACGACTTTGTGTCGA
GCTCATCTACTGCGCAATGTACCCACCTTTTGATTGGACTGATGTTGAGA
GGCGGGTAAAGTGTGATGAGGAAGGGTTTGATGCGTTCGTTGACAAGTAC
GATCTACGAGGGGTAAAGCGAGTTGTGGGGCACATGCGCGAGCAAACGCG
ACAGCGAGTGAACGAGAAGCAGCGATTGGAAAGCAGGGTGGTGAAAATCG
CAAAAGAGAAGCGGCGTATGGAACTGTTATGGGACCAGGAGAAGCGGAAG
ACGGCATTACTGGAAAGCAGGGTGGTAAAAATCGCAACCAGACCAGGCTT
TTTTCCGACCAAGAAATTTTTGTAAATGGCTGAGGAATGGAACGGGTTCG
ACGATGGCGACGTAATGCTCGACTTCGAGGGCAGGACCTTCCGTGTACAT
CGGGCGATAGTAGCTCAGGCATCGCCGGTGTGGAAAACGATGCTGACGGG
GTCGTTCGCCGAGTCGATGGAAGACAAGATACAATTCGATGGCGACAATC
CTGAGGTCGCACGACTTTGTGTCGAGCTCATCTACTGCGCAATGTACCCA
CCTTTTGATTGGACTGATGTTGAGAGGCGGGTAAAGTGTGATGAGGAAGG
GTTTGATGCGTTCGTTGACAAGTACGATCTACGAGGGGTAAAGCGAGTTG
TGGGGCACATGCGCGAGCAAACGCGACAGCGAGTGAACGAGAAGCAGCGA
TTGGAAAGCAGGGTGGTGAAAATCGCAAAAGAGAAGCGGCGTATGGAACT
GTTATGGGACCAGGAGAAGCGGAAGACGGCATTACTGGAAAGCAGGGTGG
TAAAAATCGCAACCAGACCAGGCTTTTTTCCGACCAAGAAATTTTTGTAA
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