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Homology
BLAST of mRNA_P-lacustris_contig1129.1036.1 vs. uniprot
Match: A0A6H5KTI7_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI7_9PHAE) HSP 1 Score: 142 bits (358), Expect = 3.010e-38 Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 2
Query: 143 MAEEWNGFDDGDVMLDFEGRTFRVHRAIVAQASPVWKTMLTGSFAESMEDKIQFDGDNPEVARLCVELIYCAMYPP-FDWTDVERRVKCDEEGFDAFVDKYDLRGVKRVVGHMREQT 490
+ EEW+G+DDGD+++DF GRTFRVHRA++ QASPVWK MLTG FAESM D ++FDGD E ARLC+ELIY DW VER V D DAF+DKYDL GVK + +R +T
Sbjct: 2 VEEEWSGYDDGDMVIDFGGRTFRVHRAVLPQASPVWKAMLTGEFAESMGDPVRFDGDASEAARLCIELIYSTFAEGNIDWRGVERPVNSDRTALDAFIDKYDLVGVKCSMEQIRGKT 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1097 |
| Cds size | 525 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815430.350063-UTR-P-lacustris_contig1129:6711..7141 | 1622815430.350063-UTR-P-lacustris_contig1129:6711..7141 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 6712..7141 - |
| 1693493536.799524-UTR-P-lacustris_contig1129:6711..7141 | 1693493536.799524-UTR-P-lacustris_contig1129:6711..7141 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 6712..7141 - |
| 1622815430.3714411-UTR-P-lacustris_contig1129:7666..7687 | 1622815430.3714411-UTR-P-lacustris_contig1129:7666..7687 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 7667..7687 - |
| 1693493536.8161576-UTR-P-lacustris_contig1129:7666..7687 | 1693493536.8161576-UTR-P-lacustris_contig1129:7666..7687 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 7667..7687 - |
| 1622815430.3824782-UTR-P-lacustris_contig1129:13866..13987 | 1622815430.3824782-UTR-P-lacustris_contig1129:13866..13987 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 13867..13987 - |
| 1693493536.8281226-UTR-P-lacustris_contig1129:13866..13987 | 1693493536.8281226-UTR-P-lacustris_contig1129:13866..13987 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1129 13867..13987 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815430.360384-CDS-P-lacustris_contig1129:7141..7666 | 1622815430.360384-CDS-P-lacustris_contig1129:7141..7666 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1129 7142..7666 - |
| 1693493536.807932-CDS-P-lacustris_contig1129:7141..7666 | 1693493536.807932-CDS-P-lacustris_contig1129:7141..7666 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1129 7142..7666 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1129.1036.1 >prot_P-lacustris_contig1129.1036.1 ID=prot_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MAEEWNGFDDGDVMLDFEGRTFRVHRAIVAQASPVWKTMLTGSFAESMED KIQFDGDNPEVARLCVELIYCAMYPPFDWTDVERRVKCDEEGFDAFVDKY DLRGVKRVVGHMREQTRQRVNEKQRLESRVVKIAKEKRRMELLWDQEKRK TALLESRVVKIATRPGFFPTKKFL* back to topmRNA from alignment at P-lacustris_contig1129:6712..13987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1129.1036.1 ID=mRNA_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7276bp|location=Sequence derived from alignment at P-lacustris_contig1129:6712..13987- (Pleurocladia lacustris SAG_25_93) CCGTACGCAATTCCGCTTTTAACCACATTATTGGAGGGGGCGGCTGCGGG
TTCACGTGTTCGCGGTCACCGCTGTCCAAAGTGGTTCACAGTCCTCCAGC
GATCACTCCCTCGACAGACAGGTACGTGTGATCACCATGAACACGCACAA
CAGGTTCGCACATCATGATGTCCTACTACTTGTTGCATGAATCCTCTTCG
CTCAACTCAGTTCAGACTACCCGGACCCATCAGCGACAGCAACACAGATG
TGATCCAAACCAAACGCAATCAATCGTTCATTAGTCTTGTTGCTTAGACA
CAACTTGTCAACAACAGGACTCCATTCCAAAACAAACCACTCCTGCTACC
GGAGTCGGGACACAAAAGTTATATTTCATCAGTAGTAGGCAAAAGGCCCC
GGCTGTCCCGGCACACTCGATGAGTGGCAGGTTGTCCAATCACACCAATT
CTTGAGCTCTCCATCTCCAGACTATTGGTACCACCGTGTCGCTTTCTCTT
GTTCTCTCTCTCGTACCATCTCTACCCTTTGCCATCACGACACTGACTTG
TGGCCGGTGTGGACCCATTTTCTTTGTTTTCAAACTTCAACCTTATGACG
TCAGGGGTCCTTGTGGTGGTATCTGCACACGATGCTGCTGGAAGCGCAGT
CGAGACTTCCTACAGTACATATTTCACAACATTTGACCTCGGTTCTATGC
CAGACAACACACATGTGTGGTGGAAGAAAGATCAGGGGAGAGGGTTACGA
AAAGGTCGGTTGACACAAGTGCATGGATGGAGACATGAGAGCCGGCACTG
AAAACAAATCAACGGCTCAACAAGACACACGGCAGTCAGTCCGCGAAAAC
ACACACCTACAGGCCCCACAACGTAGGCCTACCGCCACCAACCTCCGAGA
TGATCAGGCTAGGGAAGCGCAGTGGTCTCTCTAAATGTTTATGGCGATCA
GCCCTTGCAACCGTGCGGTGTGAGCCAGGCAGAGTGGGAGGTGGGGTGCT
TGTGTGTTGGCAAAAATGTCAAGTACGACGATGCCCGCTGCTTGCTCGGA
GGGTGGATGCTGTCTCTGTTTCCCGTGTTACCGAATGCACGAGCAGCCCG
CTAACGTGCAACAGCGTGGCTTTTGGTAGGGTATCTAGCGGTGTGTGTTG
TAGAGCTGCAAGACAGAGTCATGGATAGGTTTCTCCTCGGAGTGGGTGTT
GTGCGTGGACAGAGAACAGAGAGAGGGTAGGGTTGTACTTCTATATCGTG
GAGAAGGACGATTCTCGGAAGTTTCTTCCATGGCAAGTTCGAAATTGAGC
CGGTCTGGTCTTCGCACGTCAAAATGGAGACCAAAATCGGGTTTCATTTT
GGTTTCATTTTGGTCTTGAAGACTCAAATCGAATTGGATTGTCGCAAACA
CCCTATTGCCCGCGTGTCTATTTCACCCGTCTGAGGCTGGGCTCCATTTC
AGTTTCCGCTGTCGCTGTTCTATTGGCCCATCCGTGTCAACTCCCCTCCC
CTGAGCCTTTGCAGAGTCTCCAGCTCTCTTATCTTAAGCGCAGTGGTGTA
CGGAGAACAGATCGCGGGTTGTTTTTGTCCTCGCAGAAATGTGCGATGTG
TGTAGCTTTCAGTCCCTTGCCAACGTGCACTGTATGTGGTTGGTTGTTAT
CTATTCCTGCCTCACCCCAGTATTCAAACACACATCGGGCCCTCTCCTGA
AAAAGAAATCTTGTAGACCACAAAATACTATGAACAAGGCATACACGGGC
AACCGCACCCCAATCGAAGCCGGTGACTGTCCATCCTTAGGTTTGTCCGC
GAACAAAAAGCCCATCCTCCCTCACAGACATTGAGGGAACTATACAAATA
AATCAAAACGAACAAACATAATACAAAACAATACAAACGGTATGGCGCAC
ATCATGTACGGAGATATTGTAGGCTCCTTGTCGGATGTCCCCATGTTCCA
CCACTCCATCGGGAAGCCCCCTTTCTGGTTCATCGCTAACGACATACTCA
CAATGTGGTCGGTTACGAGAACCATCAGGCACCAAGGACGGTAAACCTGA
CGATCAAGCACGAAGGGGGAAATCAGAATAGAAGTGAAGTCGTACAGTAG
CAGTCTGGCCGGACACCGCGCGATTCATTGCTTCTCTCGAGTTACGCCGT
CACTAGGTAGTGTGTGAAGCTGTAGCGTACCGAGATCTTCCAACGTGCGC
GTGTCTATATCTTGGTCATCCAGAACCGACAGCTTTGCTGACAGCATTAT
TTCCTGCTCAGCCACGCTTCCGATATCCGCAACAAACACCACGGGCGACA
CCGCTTTGTCAAGCCAAGCTTCTTATGTTTTGCAGAGAGAGGCTCCATTT
TTCGGCCATAACTCCCTACAAATTGTACCCAGATCTAGTGAACTGTAACC
GCGCCACAGCTACTGTAGTGTCATCCCTTGAGGACACTATCGACATCAAA
ATATGCCATGACATCATCTGCGGTGCTTTCTCCGAACTGTCCTATTGTTT
GGTGTTCTTTGGGCCGAAGAAGGGAAGCTTGCGCAGCCGTAGCACAATGG
GCTACCACTAGCCTCTGCGGTATCCCCATACATCTCTGCGCCAGTGTACG
GTGTTTGTGGGCGATTTCGATACAAAATCTGTGAAAAAAAAATGAAAGGA
CAACATCGAGGAAGGTGCGAATGCAGGGAGTCGGACTCACGGATTGGATC
TGTGGAGACGGGGCAACGTTTCTGATAAAGCAACTTTTATTACGTTTGCC
AGACAATTTGCATACGTTTCGGAAAAATTTACTCCATACGCCGGAGTTTA
TGGCGTAGTATAATGAAGACGGTTCACCTTATCCTGGACATTGCTCAGAA
TCAGAATCATGTATAACCTAGCAGTGAGTACTGCCGCTGTAAAACTCTTA
TCTTTGAACGATGGGTGAAAGTCATGTCGAGAAAAAAACGTTGGTCGAGG
GGTCTACGTATGTTTTCTTGTATTTGACGACGAGTTGTATGCGTAAACGA
TTATTGTCGGTTTTTCTTTTCAGACTCAATATTCGCTAAACTGCAGTTCC
GAATGAACCACCATGTGAGTGCTAGTTGTGAACACCACACGCCCACGCCT
ACAAGCAGTTCATTCCCGCATGCGTTGCCAGCTCTTGGAACTCTTGGGTT
CAGGGAGACATAGGGCACGATGTTTGTGCTGTAGTACTGTGATAAATAAT
AGCCCGGGACCCCCCGGCCTCAACTGAAGCCCGCTCTCTAAATAAAACTG
TTGATTGATGTTGGAGTCGTTTCCTCGCCGAGGCCGGGGGAGGAGGGTGG
ACAGTAGTGATAATGACGTTCGTTGTCGCAATGTCCGTGGCGGCAAAGAG
GAGTGAGGTAACACTGGAAAACCTCAGGTAGGAGTGAGAAATCCGATGGG
AGACAAAAATAACGCAAGTAAGAGGAAAGAGATGACGACGTACGTGGAGG
GTTTGGGCGCGAAACCGAGAAACACCATCCGGATGCACATGAAAAGGTCA
TGTGCGATGCCGCAATATCCGTGGCGGCATTGATTCGCTGATTTCTGCAG
CGTACAGTCTTGGTAATTTATTTGAAAAAAAGAAGAGCGAAAGCGCTACT
CTAGGACACGCCAACACAAACAAACACAGAGTACAGGACGGAGAGAGAGA
CTTCAAGTCTGCGCTGGGAAACAAGTGCCTGGCTACCCATCCGACGAGGT
GGGAGTCTGCTTGCAGTGCCGTTGGACCTCGAGTGTTTGCTCCACAGGTT
CTTTTTCGTCCCATCTGTCCTTTGAGTGCACCGCTCTCTGGGCACACAGC
CTACGGGGAGTCTAGACGCTAGGCTCCCCACCCTAACCACCCACGGTATA
CCAGAGTTAACCATGGGACTCGGGCGTGTTGGGGCTTTCTACGATCACAC
TACAGCAGTGGGTATTGCCGCCGTTGGTGTTGAGTAAAGGTGTCTCAAGC
TCACACGTATTTGGCTTAAATTTCAACGTGTTTCGGTTTCTGCGGTTATG
ACAAATTCTTCAGAGGGAAAGAGAAGCTAATTCCACACTCCCTGAGCGTC
GCTGCTAGAGAATTCGGGTAGAAGGAGAATGCCGTGACCTATGCCTGAGT
CAAACGTCCTTCATGTCACGCGCAGACACGACTGCTGCCACTCGTGGGAC
ACTTTCACACGTCCGAAGTAGAGGTGCTCTGTATCTCGCTCAAATAACCT
CCAACTGGGAAGATCCGTTATGTTGCGGCTGAAATCTGGCGATCCGCAGC
CAGCGCCCGGGCCATTCGAGTTCGAAAATAATGCTTGATGCAGGTACTCT
ATAGGGCACTCAATTTTTTGCCGTTGAACCGCTGAAACGAAGAGACAGTT
GTGCGCGGCGAGCTGTGATCTTTTGATAGAATTGGGCACAACCAAGCCAC
TTGCATCTGAAACAGAGCAGTCAATGAACATGATATCACTGTAGGTTTGG
CCCGGATGCGTCACCTGCGGAGTGAGATACGTGAAACATAGTTGTTTGCT
CTGGGCTGGAGCGATGTGATTTTGGTTGAAGAGCATACACACGTATGTAT
GCGGGTGGGAGGCAAAATGTTTTTTTCGGCGACCATGTGCATTGTTGTTG
ATTGATGTTGGATATGTTTTTCAATTGTCAAATAGCCGACCGTCCCAGAT
AGATGCACCTTCTTATCAACACGGTCACCAACACTTTGTTTCATCTCAAA
ATTGAGCGAGATATTGAGGTTCGAAAATGTGTCTAGGGGGTGTGGTGTCC
TGTAAGTGTGTGGAATGCGGCATGCGAGTCGGAATGATGGCGAAATCCTG
TACCTCGTGACACTTTCTTGAACTGGGCACGCACTTGTATATTTACTGCT
GGTTCGTCGGCTCCCGCAGTTTGGGGAGCGCACCTTTTCAGAGTCGAGAG
ATCTTACTCCATGCTGTAGTATGTGCAAGTCTGTACAACGAGAAGAAAAA
GGGGGGAATACAACATGTGTGTCTTCATGTTCCTAGCGTTAACTATAGGC
CCTTCCGTGGCTCCGACCTCATGTCAGGCATATACATGTACACACATTAC
AACAGGGCATAAAATATTGCAATCATCGCCTGTATTGATTTTTGTGAGCC
GACCGCGCGAACGAAGAAACCGTCCTTCACTTAGCAGGTTCCATTTCCCG
ACTTTCGCCAGGTAAAGGCGGGTAGGCGGGATGAATGACGCGAGTTTTCC
GCGTGGCTTCCAAGTAGTACCAAGCTCACTATCCTGGAAACATGGCACTC
GATCAAGCGACACGCGTCACCAACGCGTTAGTTCGAAAGCTGCAAACGTC
ACTACGAATCGTTGAGCGATCCCAAATAATATTCGCTCCTGGGATCCTAG
AAACCCGAATCATGGCCAGACCATGAGTGCCTCTCTCAGGTGGCATTATT
ATTCTGGGTGTTCGGACACAAAATTCGTAACATTCACAATACAGCACTTT
GGATGCTCTTTTTTCCGACGAAAAAACGCCACCTTCTGAATATTAACTCG
ACCCCATTGCGCACCCCACACCATTTCAAAAATGGCCCATACCCAGTGTG
GGCAAATTGATATGCGTTTACCCACATGCCTACCACGGTGTTTTTTTTGT
ACAGACAGCACTCCAGACAGCCATACGCTGTAGTCGGCAAACATTCACGT
TGGTAAAGAGTGGGACAGGGGGGGGGGATGCTGCTGTAGTCGAATGAGGT
GTACGGACGTGTAGTATTCAGCCTTGTGCACGCGTTACGCTGCAGGGATT
TTAGGTGCACCTCGTCGGGCTTGTGTACCCTTTTCTTGCTCAGGTTGCGT
GCTCTTTAGATCCTCTGATGGCTCTAGCATTTTTGTGACCACGGACCGAG
AGTCTTTTGCTAGATGTTGGGATTAGCAACTGACATACGAGTTTAATGTG
AAGACAACAACAACAACCAACAACAACAACAACAACAACAACAGCCATAA
ACTCTACCTCACGGCACTTCGAGTCCCTGGCATAGCGCAATCTTTGAACT
GCTGCTAACACACGTGATCAATCGTATTTCCTAACAAGAAATCGAGTGAT
TTGAAACGACTTCGGTTATTGTTTATGGTGCCAGCAGACACCGGCGAAAG
TGCGCCCGATTTTTCATCGATTCCTCTGGATAGGTTTATATCGCCACCCG
TCAGTAGGCACACCACATCTTCGCTCACTACCCGCTCGAGGACGTTGCTT
GGAAACGCGGCAGAAGATGGCTCAAAGTACCTGTCTTCCTATGGCAAAAT
GCGTATTCATCTTGACTTACACGAGGGACGACGAACCCCTATGCTCACAG
ACAGGAAAAACGAGAAGCGATATGGCTGAGGAATGGAACGGGTTCGACGA
TGGCGACGTAATGCTCGACTTCGAGGGCAGGACCTTCCGTGTACATCGGG
CGATAGTAGCTCAGGCATCGCCGGTGTGGAAAACGATGCTGACGGGGTCG
TTCGCCGAGTCGATGGAAGACAAGATACAATTCGATGGCGACAATCCTGA
GGTCGCACGACTTTGTGTCGAGCTCATCTACTGCGCAATGTACCCACCTT
TTGATTGGACTGATGTTGAGAGGCGGGTAAAGTGTGATGAGGAAGGGTTT
GATGCGTTCGTTGACAAGTACGATCTACGAGGGGTAAAGCGAGTTGTGGG
GCACATGCGCGAGCAAACGCGACAGCGAGTGAACGAGAAGCAGCGATTGG
AAAGCAGGGTGGTGAAAATCGCAAAAGAGAAGCGGCGTATGGAACTGTTA
TGGGACCAGGAGAAGCGGAAGACGGCATTACTGGAAAGCAGGGTGGTAAA
AATCGCAACCAGACCAGGCTTTTTTCCGACCAAGAAATTTTTGTAAGAGG
ATCGAGGAGAGAGGGAAAAGTGATCGCCAACAATGAGGATAATGGGACGG
AGATCGGCGTTCGTTGGGGCAACGGCGAAGTATCGCACAACCTATGGTGC
GGCAAGAAAGGCCGGTATGAATTGGAGTACGCCTGAAGAAGGAGGGGCTG
TATGCAATGTGCACAAAAGCCAGAGGGGGAAACATGTTGCGGCAAAAAGC
AGCCCCATGGGGGTGGTTTTCGAACGGCAACTTCGGACAGTCAATCTACA
TATGCACCGTGCGTACCGGCCCTTTGTCCACTAGTTTCTTGAAGACAGAT
TTGGCTGGGCTCCTGCAAGCTCTATGAAAACTAATGGGGGGGCAACCGGC
TACTGCTTTGACCGCCAGCCAGTCCTAGCGTTTGTCGACTTTGAGAGTTT
ATTCTTCGATGTCACGTAGTATGTAC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1129:6712..13987- >mRNA_P-lacustris_contig1129.1036.1 ID=mRNA_P-lacustris_contig1129.1036.1|Name=mRNA_P-lacustris_contig1129.1036.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1050bp|location=Sequence derived from alignment at P-lacustris_contig1129:6712..13987- (Pleurocladia lacustris SAG_25_93) ATGGCTGAGGAATGGAACGGGTTCGACGATGGCGACGTAATGCTCGACTT CGAGGGCAGGACCTTCCGTGTACATCGGGCGATAGTAGCTCAGGCATCGC CGGTGTGGAAAACGATGCTGACGGGGTCGTTCGCCGAGTCGATGGAAGAC AAGATACAATTCGATGGCGACAATCCTGAGGTCGCACGACTTTGTGTCGA GCTCATCTACTGCGCAATGTACCCACCTTTTGATTGGACTGATGTTGAGA GGCGGGTAAAGTGTGATGAGGAAGGGTTTGATGCGTTCGTTGACAAGTAC GATCTACGAGGGGTAAAGCGAGTTGTGGGGCACATGCGCGAGCAAACGCG ACAGCGAGTGAACGAGAAGCAGCGATTGGAAAGCAGGGTGGTGAAAATCG CAAAAGAGAAGCGGCGTATGGAACTGTTATGGGACCAGGAGAAGCGGAAG ACGGCATTACTGGAAAGCAGGGTGGTAAAAATCGCAACCAGACCAGGCTT TTTTCCGACCAAGAAATTTTTGTAAATGGCTGAGGAATGGAACGGGTTCG ACGATGGCGACGTAATGCTCGACTTCGAGGGCAGGACCTTCCGTGTACAT CGGGCGATAGTAGCTCAGGCATCGCCGGTGTGGAAAACGATGCTGACGGG GTCGTTCGCCGAGTCGATGGAAGACAAGATACAATTCGATGGCGACAATC CTGAGGTCGCACGACTTTGTGTCGAGCTCATCTACTGCGCAATGTACCCA CCTTTTGATTGGACTGATGTTGAGAGGCGGGTAAAGTGTGATGAGGAAGG GTTTGATGCGTTCGTTGACAAGTACGATCTACGAGGGGTAAAGCGAGTTG TGGGGCACATGCGCGAGCAAACGCGACAGCGAGTGAACGAGAAGCAGCGA TTGGAAAGCAGGGTGGTGAAAATCGCAAAAGAGAAGCGGCGTATGGAACT GTTATGGGACCAGGAGAAGCGGAAGACGGCATTACTGGAAAGCAGGGTGG TAAAAATCGCAACCAGACCAGGCTTTTTTCCGACCAAGAAATTTTTGTAA back to top
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