mRNA_P-lacustris_contig1127.1021.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 121 bits (303), Expect = 5.710e-29 Identity = 65/153 (42.48%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
Y ++AC+GG V +YC GY G CAVC YA G SC C G+ +SA+G VA+ +AL ++ +LVRVVD+ P + S W R R+ + KAVPLTS+K VVV WQIVTQFS + YPD+YE F
Sbjct: 633 YQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEV-----------EPDTAST------WGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQFSSVVNVVYPDIYESF 768
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.330e-27 Identity = 61/153 (39.87%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
++K AC GG +G YC+ GY GP CAVCAA Y+PG +C C G + KSA+ A+ ++AL ++ LV VV+ G R+ G W ++ + + VPLT++K VVVVWQIVTQ+SD+AG YP Y++F
Sbjct: 587 FHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGLLALAAVMVLVSRLVSVVEVGPRQQXXXXXXGSKG----------WRRTCSALQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGIEYPGAYQDF 729
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.450e-27 Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
++K AC GG VG YCA GY GP CAVC+A Y+PG +C C G + KSA+ A+ +AL ++ LV VV+ G + Q+G W + + + VPLT++K VVVVWQIVTQ+SD+AG YP Y++F
Sbjct: 611 FHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAVVALVSRLVSVVEVGPPQ---------------QQGSKGWRRTCSAWQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGVEYPGAYQDF 748
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 113 bits (283), Expect = 2.900e-26 Identity = 60/153 (39.22%), Postives = 88/153 (57.52%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
+ +DAC GG VGEYCA+GY GP CAVC A ++PG SC C G + + A + AV ++ L + +LV VV+ +T + + P+ W+ + + + K +PLT++K VVVVWQIVTQ+SD+AG YP Y++F
Sbjct: 617 FYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSPGYFHSCKSCMGDSRRRAFYVVSAVGVLVLLAVVFMAAKLVSVVE----------------TTPSSKAPSRWQQKRSVWQARMKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDF 753
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.070e-24 Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 7 KDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
+DAC GG VGEYCA+GY GP CAVC A ++ G SC C G + + A + V + L + +LV VV+ T +++ P+ W+ + R + K +PLT++K VVVVWQIVTQ+SD+AG YP Y++F
Sbjct: 477 EDACEGGQVVGEYCATGYSGPYCAVCTAGFSRGYFHSCKSCMGDSRRRAFYVVSTVGALVLLAVVFLAAKLVSVVE----------------MTPSRKAPSRWQRKRSVWRARIKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDF 611
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 107 bits (268), Expect = 2.800e-24 Identity = 67/153 (43.79%), Postives = 81/153 (52.94%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
Y AC GG YCA GYEGP C+VCA YAPG CHECSG + SAVG+ XXX + +LVRVVD ++ GR S RFQ + A PLT++K VVV WQI+TQF IAG YP+ Y++F
Sbjct: 363 YLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGLAAXXXXXXXXXXAVVATDLVRVVDGDRSIKDARTLKGRLS-------------RFQ---AFVVNAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDF 499
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.000e-23 Identity = 66/153 (43.14%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 1 YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
Y AC GG YCA GYEGP C+VCA YAPG CHECSG + SAVG+ XXX + +LVRVVD ++ GR S RF + A PLT++K VVV WQI+TQF IAG YP+ Y++F
Sbjct: 604 YLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGVAXXXXXXXXXXXAVVAADLVRVVDGDDSIKDARTLKGRLS-------------RFH---AFVVTAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDF 740
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.010e-16 Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 1
Query: 1 YNKDACVGGDTVGE-YCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
YN DAC GG T + +CASGY+GP CAVC +Y+ + +C CS + I +I+ + + ++ ST ++EG F R + AVP+ SLK +VVVWQI+TQF+D A +P +Y++F
Sbjct: 1202 YNADACAGGKTGADSFCASGYQGPYCAVCETDYSSSLAHTCKHCSSSRRRGLTVIAAIAVIVTVLAFAAVFQYML--------------------STEHEEGI------FGCFRRRVLGAVPVESLKIIVVVWQILTQFADAANVTFPGLYQDF 1329
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.870e-16 Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 1 YNKDACVGGDT-VGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEE 456
Y+ DAC+GG T YC GYEGP C +C+ Y + +C +CS SA GI VAV++ L + + +V V G E+ +GG + EL+T+ +PL SLK V+V WQI+TQF+ +A YPDVY++
Sbjct: 1074 YHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKCSEN---SAGGIAVAVVLALLIVF--LAVAVVSYVTSG--EVGMGRKGG--------------------IVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQD 1199
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.500e-16 Identity = 56/154 (36.36%), Postives = 75/154 (48.70%), Query Frame = 1
Query: 1 YNKDACVGGDTVGE-YCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSAVGIGVAVLIIALXXXXXILMELVRVVDDGGRELYTKSEGGRPSSTSNQEGPTNWELRFQYVRELLTKAVPLTSLKTVVVVWQIVTQFSDIAGNAYPDVYEEF 459
YN+DACVGG T +C GYEGP C+VC+ Y+ + +C EC G A+ + V V + L + M LV +G R + V + K +PL S+K VVVVWQI+TQFS +A YPDVY+ F
Sbjct: 1339 YNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFV--LGAAIALCMHLVSGEMEGAR---------------------------RGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRF 1463 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1127.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1127.1021.1 >prot_P-lacustris_contig1127.1021.1 ID=prot_P-lacustris_contig1127.1021.1|Name=mRNA_P-lacustris_contig1127.1021.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=153bp YNKDACVGGDTVGEYCASGYEGPLCAVCAAEYAPGVGLSCHECSGQTGKSback to top mRNA from alignment at P-lacustris_contig1127:18244..19637+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1127.1021.1 ID=mRNA_P-lacustris_contig1127.1021.1|Name=mRNA_P-lacustris_contig1127.1021.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1394bp|location=Sequence derived from alignment at P-lacustris_contig1127:18244..19637+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1127:18244..19637+ >mRNA_P-lacustris_contig1127.1021.1 ID=mRNA_P-lacustris_contig1127.1021.1|Name=mRNA_P-lacustris_contig1127.1021.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=918bp|location=Sequence derived from alignment at P-lacustris_contig1127:18244..19637+ (Pleurocladia lacustris SAG_25_93)back to top |