mRNA_P-lacustris_contig1127.1019.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1127.1019.1
Unique NamemRNA_P-lacustris_contig1127.1019.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.470e-39
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 MVALNHS-MSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGLYL 309
            MVAL HS  SKDDQVR PTV VG TWQAIPE+ATIE RLQ +AQTGQ+ Q+RRLLYVEMLKKATA VS+GVQ VPP+TMRAIVQTFESSM+ AAMISSGQG  L
Sbjct:  439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVL 542
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.850e-18
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 MVAL-NHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKAT 189
            MVAL N   SKDDQVR PT  VG TWQAIPENATIE RLQ +AQTGQ+ Q+RRLL+VEMLKK T
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.900e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGL 303
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  GL
Sbjct:   10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGL 87
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.930e-14
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:    4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGL 303
            VALNH    + + +AP V  G                    W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  GL
Sbjct:  717 VALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGL 832
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.680e-13
Identity = 48/118 (40.68%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGL 303
            V  NH    + + +AP V  G                    W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+VQ F+  +H A+ I S  GL
Sbjct:  272 VTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGL 387
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.790e-13
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:  145 QNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGLYL 309
            Q+RRLLYV+M+K+  A VSAGV+ VPP+T+RAIV+TFESS++ AA ISSGQG+ L
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVL 388
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BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-11
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFES-SMHTAAMISSGQGL 303
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+   +H A+ I S  GL
Sbjct:  109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGL 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1127.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE8.470e-3979.81MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JBU5_9PHAE2.850e-1875.00SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JCK5_9PHAE2.900e-1451.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG6_9PHAE4.930e-1441.53SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI2.680e-1340.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU34_9PHAE6.790e-1367.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMX3_9PHAE1.180e-1150.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1127contigP-lacustris_contig1127:5359..5767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.7613235-UTR-P-lacustris_contig1127:5358..54251622815428.7613235-UTR-P-lacustris_contig1127:5358..5425Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1127 5359..5425 -
1693493535.8840578-UTR-P-lacustris_contig1127:5358..54251693493535.8840578-UTR-P-lacustris_contig1127:5358..5425Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1127 5359..5425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.7736218-CDS-P-lacustris_contig1127:5425..57671622815428.7736218-CDS-P-lacustris_contig1127:5425..5767Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 5426..5767 -
1693493535.9003813-CDS-P-lacustris_contig1127:5425..57671693493535.9003813-CDS-P-lacustris_contig1127:5425..5767Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 5426..5767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1127.1019.1prot_P-lacustris_contig1127.1019.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1127 5426..5767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1127.1019.1

>prot_P-lacustris_contig1127.1019.1 ID=prot_P-lacustris_contig1127.1019.1|Name=mRNA_P-lacustris_contig1127.1019.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=114bp
MVALNHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQN
RRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQG
LYLQPTSCTPTSC*
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mRNA from alignment at P-lacustris_contig1127:5359..5767-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1127.1019.1 ID=mRNA_P-lacustris_contig1127.1019.1|Name=mRNA_P-lacustris_contig1127.1019.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=409bp|location=Sequence derived from alignment at P-lacustris_contig1127:5359..5767- (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC
CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA
TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC
CGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAG
CGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAGA
CTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGG
CTGTACTTGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAGTCAAG
GTACTAGAGAGAAGTCGAGCTCGGAGTATGGCGGGCCGGCGTCTAGGAGA
CGCGCGCAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1127:5359..5767-

>mRNA_P-lacustris_contig1127.1019.1 ID=mRNA_P-lacustris_contig1127.1019.1|Name=mRNA_P-lacustris_contig1127.1019.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=684bp|location=Sequence derived from alignment at P-lacustris_contig1127:5359..5767- (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC
CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA
TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC
CGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAG
CGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAGA
CTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGG
CTGTACTTGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGATGGTTGC
GCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCCCACTGTCC
CGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCATAGAGTGT
AGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAACCGCCGGCT
CCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAGCGCTGGGG
TGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAGACTTTCGAA
AGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGGCTGTACTT
GCAACCCACAAGCTGTACGCCAACCAGCTGTTAG
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