mRNA_P-lacustris_contig1124.1007.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1124.1007.1
Unique NamemRNA_P-lacustris_contig1124.1007.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1124.1007.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.650e-55
Identity = 194/344 (56.40%), Postives = 215/344 (62.50%), Query Frame = 1 
Query:  424 LGLLSGETVAEAAEAAEDLEAVAP----APGGAGRS--GASEENGITS-SGIPEGXXXXXXXXXXXEDGPFSTTISDATSLSYAAAGAPLARSSTXXXXXXXXXXXXX----AEDVDMPLFDESGVISMATDQEESSLAPSAPSXXXXXVAA-------ADTALASLSNPFLRRSSSDGSVSTIA-AAPVAGRQQHEVLLSRGGVSGGGNGEVESSGANGLNPSSGMGSVGGARRRRGVSLGGGGVLASASG-----GDMRSGLSRKFVRSLMRHLNMRADARQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRSEFHRQRNA 1383
            LGLLSGE VAEAA               A  GAG +    S   GI+S    PE             D PFS T+S A S SY A GAP+ARSS XXXXXXXXXXXXX    AEDVDMPLFDE G+I MATD+E  +    APS XXXX          A  A +  S+   +RS SDG VS IA AA  A  QQH+ L  RGG + G    ++       + ++G G+ G   RRRGVSL                G MRSGLSRKFVRSLMRHLNMRAD+RQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETR+EFHRQR+A
Sbjct:   61 LGLLSGEAVAEAAXXXXXXXXXXXXXEEAQVGAGEAVGSVSGSRGISSLDNTPE----ERQQPQQQPDSPFSATVSRAVSSSYPAVGAPVARSSXXXXXXXXXXXXXXXXXXAEDVDMPLFDEGGMIVMATDREVGNGNLPAPSSXXXXXXXXXXXXXXAPVAGSLHSDYTFQRSRSDGHVSAIATAAAAAPYQQHDGLF-RGGSNRG----IQRRDVGSSSNATGAGAXG-RPRRRGVSLXXXXXXXXXXXXXXXXGGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEFHRQRSA 394
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1124.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE1.650e-5556.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1124contigP-lacustris_contig1124:17176..20517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002360.2
Exons2
Model size1435
Cds size1434
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.357168-CDS-P-lacustris_contig1124:17175..172561622815426.357168-CDS-P-lacustris_contig1124:17175..17256Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 17176..17256 +
1693493534.517727-CDS-P-lacustris_contig1124:17175..172561693493534.517727-CDS-P-lacustris_contig1124:17175..17256Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 17176..17256 +
1622815426.3686016-CDS-P-lacustris_contig1124:19163..205161622815426.3686016-CDS-P-lacustris_contig1124:19163..20516Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 19164..20516 +
1693493534.5294623-CDS-P-lacustris_contig1124:19163..205161693493534.5294623-CDS-P-lacustris_contig1124:19163..20516Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 19164..20516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1124.1007.1prot_P-lacustris_contig1124.1007.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1124 17176..20516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1124.1007.1

>prot_P-lacustris_contig1124.1007.1 ID=prot_P-lacustris_contig1124.1007.1|Name=mRNA_P-lacustris_contig1124.1007.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=478bp
SLISGGQVRDTVVAGSSPSIDVAVPCTKERKRAPPKPMATAQVSFIPGAT
MNGRRAYYGSASPPQAGTGASMMPPPSSPPPRPSATMAIRRQLSPVSRQR
QAPRGGRGAAHAAAPPVVAIDLDEDESSGDEGDDDNDDDDDLGLLSGETV
AEAAEAAEDLEAVAPAPGGAGRSGASEENGITSSGIPEGEREEGEQQEAE
EDGPFSTTISDATSLSYAAAGAPLARSSTASSSTSSSSSSSSAEDVDMPL
FDESGVISMATDQEESSLAPSAPSPSSPSVAAADTALASLSNPFLRRSSS
DGSVSTIAAAPVAGRQQHEVLLSRGGVSGGGNGEVESSGANGLNPSSGMG
SVGGARRRRGVSLGGGGVLASASGGDMRSGLSRKFVRSLMRHLNMRADAR
QREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSE
TRSEFHRQRNAAAAAAAAAAAEAARVGG
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mRNA from alignment at P-lacustris_contig1124:17176..20517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1124.1007.1 ID=mRNA_P-lacustris_contig1124.1007.1|Name=mRNA_P-lacustris_contig1124.1007.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3342bp|location=Sequence derived from alignment at P-lacustris_contig1124:17176..20517+ (Pleurocladia lacustris SAG_25_93)
AGCTTAATATCTGGGGGTCAGGTGCGCGATACCGTGGTGGCAGGAAGTTC
TCCAAGTATCGACGTGGCAGTTCCTTGTACGGTGAGAGACTACGAGCGCG
AGCGTTAATTTTCGTGTGGTGTATGCCTGGACCCGGTTTGGGCTCTGCCT
CGCTTTGCTTTTTCTTTACCTTTACGCGCTCAGCTGTTTGCTGAGCCCGA
ACAGGTCATCCAAGCAGCAGTGTGCATTCGTCGTGTTTGCCTATATTTAC
GGTTGAGAGATGAGCGTGAGGGTCGTAGGAGAGCGCCCGTGAGTGCTGAA
ATTTTGTGCTTGATGCGAAATTTTTTGCGCGAACTTTACTTTTCCTTCGA
AGATATGGTTCCTGCTAGCTGGGCGCTCAGGGCGTTGTAAAAGCAAACAG
GAGGGACATTTTGCAACAGACGGTTGGGGCAAGGTCGCAAACGGGTTGGA
CTCTACCGCAGAAGAATGGTCCTTGGCTCGTTTTACCCTGCTTGTAATCT
GGATGTGTGTGTAGAAGATTCACATTTTGCTACAGCAGTAGCACGAGTTT
TTTTAGTATCTTTTTTTGGCGGGGCAGGTCTCACGACAGAGTAGAAGTGA
AGTTTCGCGCGCTTTCGTGTGTGTCGACTACTACTTTCAATGCCAGTTCT
CGACATTCAACCTCTGTGTGTCAGGCAGCAAGCACCGCATCGCTGCTACT
CACCTCCTATTCCGAGAGATGTGTGTTCATGTGTGCAGCTGTGCGTTTTC
GGCAAAAGTTGGCATACTTCGCCTTTTTTGGAGTCCTTGCGTATTATGCA
TAATATTTATACTCCGTAGTATTTATATTTTCGTCCTGTTCGCGTTTGCG
TGTTGTGCCCGCGACCGACTGCACGACGAATGCATTTTTTTTTTTCCTGC
ACGCGTTGTACGCGTACGACAAGCAAGCCTTGCTTCCTGATGAAACCGAA
TCTTTCATGAAGAACACGTCCGGCGTCGTGGGCAGCAGCACCATAGACTA
CTACTCTTTTTTTTGCCTTGGATCCTGACGTCAAAGCGTCGTGTAGTGTT
CGTCTCACGTACAAGGCCCCAGCACTTGCATGCAACACACACACGGAAAC
GCCGTGACACATCGCTTGGGAAAGACGGAAGCCCGTTTCTCTACGACGGA
AGAGCACGGAAGAGGACGAACTGGATAAAATTGGAGAGAGAGATTGTTTT
TGATGCGAGAAGGGCCTGGATAGAGGCGATGCGCGGCTTTTGATCCAACC
AAGGAGAAAGTGAATCGATACCATACGGCATGATTTTTGTTGCGACGACG
ACGGTCGACAGGCACGCATTCACACAACTCACACGAGACGAAAGAAGGGA
GTGGATGGAGGACACCGGACAACGCGTGTTATCCCTGTGCTGTAATCTGC
CTCTCGAGCCACGTGCGCTGCTGCTGCTGCTGCTGCACACGAGGTTGTCG
TTGCTGTCTTCGCGCCAAAACCTCGGCCGTTGGAAACCGGATACGAATAA
CTCTATCCCCCTTCACAACACAAGATAATTCTGACATAGCTGTCCGCGGT
GGACATCCATGCCCACCTCCAATCAAGGCATCTCATTTTATTGTCATTTC
CTCGGGTCCTAATGTGGTTTAGCGCTTTTTGCTTTTTGCAGTGAAATCGC
TGGCGTCCTGCACGATGGTCGCCCCCGCTCCTGTCTAACTTGTGAATGGC
CTATGATGAGATTCCCTCGCGGTAGTGAATTTCGCCCGCACCATGTGAAA
CGTCGCCTTCGAATCGGCCGCAGTTTATTTATTCCAAAAACCACCAACTT
GCACTACATGTAGCAAGCCAGCTAGCCCCCTCGCTCGTAACCTCAGTACT
GCGTCTGACCCGCGTACGCGTAGCTTATCCTTTTTTTTTTTTTCTGACGG
CGGAGACCATCCCCCATTTTCCCGCCGTGGCCCGCCTTGCCCGCTTCGCT
CGCCGCACTACCCTCCCTCTATCTTGGTGCACCAAAAGAAAGAAAGAAAA
AGAGCACCCCCGAAACCAATGGCTACTGCTCAGGTTTCGTTTATCCCCGG
AGCGACAATGAACGGGCGCAGGGCGTACTACGGCAGCGCCTCACCGCCGC
AAGCAGGGACGGGCGCTTCGATGATGCCACCACCGTCATCGCCGCCCCCA
CGACCATCGGCCACGATGGCGATTAGACGACAGCTGTCGCCGGTATCTCG
TCAACGGCAAGCACCTCGAGGGGGAAGAGGAGCGGCCCATGCGGCGGCGC
CGCCCGTGGTGGCGATAGATCTCGACGAGGACGAGTCTTCCGGCGATGAG
GGTGACGACGACAACGACGACGATGACGACCTCGGTCTTTTGTCGGGGGA
GACCGTGGCGGAGGCGGCGGAAGCGGCGGAAGATTTGGAAGCGGTGGCGC
CGGCGCCGGGGGGGGCAGGACGCAGTGGGGCAAGCGAAGAGAACGGCATT
ACCAGCAGCGGTATACCGGAGGGGGAGAGAGAGGAGGGAGAGCAGCAAGA
AGCGGAAGAGGATGGTCCCTTCTCCACGACCATTTCCGACGCTACGTCTC
TCTCATACGCTGCTGCTGGTGCGCCGCTCGCTCGCAGCAGCACCGCCTCG
AGCAGCACATCCTCTTCTTCCTCCTCCTCCTCCGCGGAAGACGTCGACAT
GCCGCTGTTCGACGAGAGCGGCGTGATCTCCATGGCGACGGACCAAGAAG
AAAGCAGCTTGGCGCCGTCGGCGCCCTCCCCGTCGTCGCCAAGCGTCGCG
GCCGCCGATACCGCGCTCGCTTCTCTCAGCAACCCCTTTCTTCGGAGGAG
CAGCAGCGACGGAAGCGTCAGCACGATCGCGGCGGCACCGGTGGCGGGAC
GCCAGCAGCACGAAGTCTTGCTCAGCAGGGGCGGCGTGAGCGGCGGAGGG
AACGGGGAGGTCGAGAGCAGCGGTGCCAACGGCCTCAACCCCAGCAGCGG
GATGGGCAGTGTTGGAGGTGCGCGTAGAAGGCGGGGGGTGTCGCTCGGTG
GCGGCGGGGTCCTCGCCAGCGCGAGCGGTGGCGACATGCGCTCGGGCCTC
TCCCGAAAGTTTGTTCGCAGCCTGATGCGCCACCTCAACATGAGGGCGGA
CGCTCGCCAGCGAGAGGAGCTACGGTCGATGGTCGAAACGCTCAAGCACC
GGAGCTCCGTCAGGGGGGTCGACATGAAGCAGGAGATCAAGCGGGAGGCG
GTGTCTCTCCTCGGACCTGAGCTCGCGCGCGAGGCCTTCGAGGCCTCGCT
CTCGGAGACCCGCAGCGAGTTCCACCGGCAGCGCAACGCCGCCGCCGCTG
CCGCCGCCGCTGCCGCCGCCGAGGCCGCTCGCGTCGGCGGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1124:17176..20517+

>mRNA_P-lacustris_contig1124.1007.1 ID=mRNA_P-lacustris_contig1124.1007.1|Name=mRNA_P-lacustris_contig1124.1007.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2868bp|location=Sequence derived from alignment at P-lacustris_contig1124:17176..20517+ (Pleurocladia lacustris SAG_25_93)
AGCTTAATATCTGGGGGTCAGGTGCGCGATACCGTGGTGGCAGGAAGTTC
TCCAAGTATCGACGTGGCAGTTCCTTGTACGAGCTTAATATCTGGGGGTC
AGGTGCGCGATACCGTGGTGGCAGGAAGTTCTCCAAGTATCGACGTGGCA
GTTCCTTGTACGAAAGAAAGAAAAAGAGCACCCCCGAAACCAATGGCTAC
TGCTCAGGTTTCGTTTATCCCCGGAGCGACAATGAACGGGCGCAGGGCGT
ACTACGGCAGCGCCTCACCGCCGCAAGCAGGGACGGGCGCTTCGATGATG
CCACCACCGTCATCGCCGCCCCCACGACCATCGGCCACGATGGCGATTAG
ACGACAGCTGTCGCCGGTATCTCGTCAACGGCAAGCACCTCGAGGGGGAA
GAGGAGCGGCCCATGCGGCGGCGCCGCCCGTGGTGGCGATAGATCTCGAC
GAGGACGAGTCTTCCGGCGATGAGGGTGACGACGACAACGACGACGATGA
CGACCTCGGTCTTTTGTCGGGGGAGACCGTGGCGGAGGCGGCGGAAGCGG
CGGAAGATTTGGAAGCGGTGGCGCCGGCGCCGGGGGGGGCAGGACGCAGT
GGGGCAAGCGAAGAGAACGGCATTACCAGCAGCGGTATACCGGAGGGGGA
GAGAGAGGAGGGAGAGCAGCAAGAAGCGGAAGAGGATGGTCCCTTCTCCA
CGACCATTTCCGACGCTACGTCTCTCTCATACGCTGCTGCTGGTGCGCCG
CTCGCTCGCAGCAGCACCGCCTCGAGCAGCACATCCTCTTCTTCCTCCTC
CTCCTCCGCGGAAGACGTCGACATGCCGCTGTTCGACGAGAGCGGCGTGA
TCTCCATGGCGACGGACCAAGAAGAAAGCAGCTTGGCGCCGTCGGCGCCC
TCCCCGTCGTCGCCAAGCGTCGCGGCCGCCGATACCGCGCTCGCTTCTCT
CAGCAACCCCTTTCTTCGGAGGAGCAGCAGCGACGGAAGCGTCAGCACGA
TCGCGGCGGCACCGGTGGCGGGACGCCAGCAGCACGAAGTCTTGCTCAGC
AGGGGCGGCGTGAGCGGCGGAGGGAACGGGGAGGTCGAGAGCAGCGGTGC
CAACGGCCTCAACCCCAGCAGCGGGATGGGCAGTGTTGGAGGTGCGCGTA
GAAGGCGGGGGGTGTCGCTCGGTGGCGGCGGGGTCCTCGCCAGCGCGAGC
GGTGGCGACATGCGCTCGGGCCTCTCCCGAAAGTTTGTTCGCAGCCTGAT
GCGCCACCTCAACATGAGGGCGGACGCTCGCCAGCGAGAGGAGCTACGGT
CGATGGTCGAAACGCTCAAGCACCGGAGCTCCGTCAGGGGGGTCGACATG
AAGCAGGAGATCAAGCGGGAGGCGGTGTCTCTCCTCGGACCTGAGCTCGC
GCGCGAGGCCTTCGAGGCCTCGCTCTCGGAGACCCGCAGCGAGTTCCACC
GGCAGCGCAACGCCGCCGCCGCTGCCGCCGCCGCTGCCGCCGCCGAGGCC
GCTCGCGTCGGCGGGAAAGAAAGAAAAAGAGCACCCCCGAAACCAATGGC
TACTGCTCAGGTTTCGTTTATCCCCGGAGCGACAATGAACGGGCGCAGGG
CGTACTACGGCAGCGCCTCACCGCCGCAAGCAGGGACGGGCGCTTCGATG
ATGCCACCACCGTCATCGCCGCCCCCACGACCATCGGCCACGATGGCGAT
TAGACGACAGCTGTCGCCGGTATCTCGTCAACGGCAAGCACCTCGAGGGG
GAAGAGGAGCGGCCCATGCGGCGGCGCCGCCCGTGGTGGCGATAGATCTC
GACGAGGACGAGTCTTCCGGCGATGAGGGTGACGACGACAACGACGACGA
TGACGACCTCGGTCTTTTGTCGGGGGAGACCGTGGCGGAGGCGGCGGAAG
CGGCGGAAGATTTGGAAGCGGTGGCGCCGGCGCCGGGGGGGGCAGGACGC
AGTGGGGCAAGCGAAGAGAACGGCATTACCAGCAGCGGTATACCGGAGGG
GGAGAGAGAGGAGGGAGAGCAGCAAGAAGCGGAAGAGGATGGTCCCTTCT
CCACGACCATTTCCGACGCTACGTCTCTCTCATACGCTGCTGCTGGTGCG
CCGCTCGCTCGCAGCAGCACCGCCTCGAGCAGCACATCCTCTTCTTCCTC
CTCCTCCTCCGCGGAAGACGTCGACATGCCGCTGTTCGACGAGAGCGGCG
TGATCTCCATGGCGACGGACCAAGAAGAAAGCAGCTTGGCGCCGTCGGCG
CCCTCCCCGTCGTCGCCAAGCGTCGCGGCCGCCGATACCGCGCTCGCTTC
TCTCAGCAACCCCTTTCTTCGGAGGAGCAGCAGCGACGGAAGCGTCAGCA
CGATCGCGGCGGCACCGGTGGCGGGACGCCAGCAGCACGAAGTCTTGCTC
AGCAGGGGCGGCGTGAGCGGCGGAGGGAACGGGGAGGTCGAGAGCAGCGG
TGCCAACGGCCTCAACCCCAGCAGCGGGATGGGCAGTGTTGGAGGTGCGC
GTAGAAGGCGGGGGGTGTCGCTCGGTGGCGGCGGGGTCCTCGCCAGCGCG
AGCGGTGGCGACATGCGCTCGGGCCTCTCCCGAAAGTTTGTTCGCAGCCT
GATGCGCCACCTCAACATGAGGGCGGACGCTCGCCAGCGAGAGGAGCTAC
GGTCGATGGTCGAAACGCTCAAGCACCGGAGCTCCGTCAGGGGGGTCGAC
ATGAAGCAGGAGATCAAGCGGGAGGCGGTGTCTCTCCTCGGACCTGAGCT
CGCGCGCGAGGCCTTCGAGGCCTCGCTCTCGGAGACCCGCAGCGAGTTCC
ACCGGCAGCGCAACGCCGCCGCCGCTGCCGCCGCCGCTGCCGCCGCCGAG
GCCGCTCGCGTCGGCGGG
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