mRNA_P-lacustris_contig1122.998.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1122.998.1
Unique NamemRNA_P-lacustris_contig1122.998.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: A0A6H5KET3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.250e-27
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 FKHGESRVVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVEYAYTDEWRRARNLEDN 198
            F+ GESRVVSSVPLQVTTIEYSSD RIKE +VDVDVDD+LQRFMEVEMVEYAYT+EWR+ARNL +N
Sbjct: 2151 FEGGESRVVSSVPLQVTTIEYSSDERIKESIVDVDVDDVLQRFMEVEMVEYAYTEEWRQARNLGEN 2216
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: D7FS23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS23_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.700e-27
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 FKHGESRVVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVEYAYTDEWRRARNLEDN 198
            F+ GESRVVSSVPLQVTTIEYSSD RIKE ++DVDVDD+LQRFMEVEMVEYAYT+EWR+ARNL +N
Sbjct: 2344 FEGGESRVVSSVPLQVTTIEYSSDERIKESIIDVDVDDVLQRFMEVEMVEYAYTEEWRQARNLGEN 2409
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: A0A7S2KFY9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFY9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.580e-15
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   22 VVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVEYAYTDEWRRARNLEDN 198
            V+SSVP+QVTT++YSSD RIK+ + +VD DDILQR   ++  EY Y+D WRR R + D+
Sbjct:   39 VISSVPVQVTTVQYSSDKRIKKDIRNVDTDDILQRLQRIQFAEYGYSDAWRRVRGIPDH 97
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: A0A835YNN8_9STRA (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.370e-14
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   13 ESRVVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVEYAYTDEWRRARNL 189
            + R++++VP+QV++I+YSSD RIK  V DVDVDD+LQRF  VEM  Y YT++WR    +
Sbjct:    2 DPRIITNVPMQVSSIQYSSDQRIKNRVEDVDVDDLLQRFQHVEMKSYHYTEQWRNVNRI 60
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: A0A8J2WEE7_9STRA (Hypothetical protein n=7 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEE7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.630e-10
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   22 VVSSVPLQVTTIEYSSDGRIKEGVV---DVDVDDILQRFMEVEMVEYAYTDEWRRARNLED 195
            ++S+VP++VT IEYSSD RIKE +    D ++DDI  RF ++++  Y YTDEW + R ++D
Sbjct: 5737 IISTVPMRVTKIEYSSDERIKEDIHYLDDAELDDIYDRFTQIKLANYRYTDEWLKIRGVDD 5797
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BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Match: A0A482RVZ2_9ARCH (Tail fiber domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVZ2_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 7.080e-8
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   16 SRVVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVEYAYTDEWRRARN 186
            S +V++ P+Q TT++YSSD RIK  +  V+ + ILQR +++ +  Y YTDEW + R+
Sbjct:  149 SMIVATAPIQATTVQYSSDIRIKSDIQPVNENSILQRILKIPIRSYRYTDEWLKVRD 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1122.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KET3_9PHAE1.250e-2784.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS23_ECTSI1.700e-2783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2KFY9_9STRA4.580e-1555.93Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
A0A835YNN8_9STRA5.370e-1454.24Peptidase S74 domain-containing protein (Fragment)... [more]
A0A8J2WEE7_9STRA3.630e-1047.54Hypothetical protein n=7 Tax=Pelagomonas calceolat... [more]
A0A482RVZ2_9ARCH7.080e-843.86Tail fiber domain-containing protein n=1 Tax=archa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1122contigP-lacustris_contig1122:7484..7681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog2880.D7FS23
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMRT@1,2QRKV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.3412611-CDS-P-lacustris_contig1122:7483..76811622815425.3412611-CDS-P-lacustris_contig1122:7483..7681Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1122 7484..7681 +
1693493533.9194171-CDS-P-lacustris_contig1122:7483..76811693493533.9194171-CDS-P-lacustris_contig1122:7483..7681Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1122 7484..7681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1122.998.1prot_P-lacustris_contig1122.998.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1122 7484..7681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1122.998.1

>prot_P-lacustris_contig1122.998.1 ID=prot_P-lacustris_contig1122.998.1|Name=mRNA_P-lacustris_contig1122.998.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=66bp
FKHGESRVVSSVPLQVTTIEYSSDGRIKEGVVDVDVDDILQRFMEVEMVE
YAYTDEWRRARNLEDN
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mRNA from alignment at P-lacustris_contig1122:7484..7681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1122.998.1 ID=mRNA_P-lacustris_contig1122.998.1|Name=mRNA_P-lacustris_contig1122.998.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=198bp|location=Sequence derived from alignment at P-lacustris_contig1122:7484..7681+ (Pleurocladia lacustris SAG_25_93)
TTCAAACACGGCGAGTCGCGCGTGGTGTCCAGCGTCCCGCTTCAAGTCAC
CACGATCGAGTACTCGTCTGATGGACGGATAAAGGAAGGCGTCGTGGACG
TGGATGTCGACGACATCCTGCAGCGCTTCATGGAAGTGGAGATGGTGGAG
TACGCCTACACGGACGAGTGGCGCCGAGCTCGCAACCTGGAAGACAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1122:7484..7681+

>mRNA_P-lacustris_contig1122.998.1 ID=mRNA_P-lacustris_contig1122.998.1|Name=mRNA_P-lacustris_contig1122.998.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=396bp|location=Sequence derived from alignment at P-lacustris_contig1122:7484..7681+ (Pleurocladia lacustris SAG_25_93)
TTCAAACACGGCGAGTCGCGCGTGGTGTCCAGCGTCCCGCTTCAAGTCAC
CACGATCGAGTACTCGTCTGATGGACGGATAAAGGAAGGCGTCGTGGACG
TGGATGTCGACGACATCCTGCAGCGCTTCATGGAAGTGGAGATGGTGGAG
TACGCCTACACGGACGAGTGGCGCCGAGCTCGCAACCTGGAAGACAACTT
CAAACACGGCGAGTCGCGCGTGGTGTCCAGCGTCCCGCTTCAAGTCACCA
CGATCGAGTACTCGTCTGATGGACGGATAAAGGAAGGCGTCGTGGACGTG
GATGTCGACGACATCCTGCAGCGCTTCATGGAAGTGGAGATGGTGGAGTA
CGCCTACACGGACGAGTGGCGCCGAGCTCGCAACCTGGAAGACAAC
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