mRNA_P-lacustris_contig1120.984.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1120.984.1
Unique NamemRNA_P-lacustris_contig1120.984.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1120.984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1120contigP-lacustris_contig1120:7187..7683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.8553662-UTR-P-lacustris_contig1120:7186..73831622815423.8553662-UTR-P-lacustris_contig1120:7186..7383Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1120 7187..7383 +
1693493533.0687644-UTR-P-lacustris_contig1120:7186..73831693493533.0687644-UTR-P-lacustris_contig1120:7186..7383Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1120 7187..7383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.8664186-CDS-P-lacustris_contig1120:7383..76831622815423.8664186-CDS-P-lacustris_contig1120:7383..7683Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1120 7384..7683 +
1693493533.0823095-CDS-P-lacustris_contig1120:7383..76831693493533.0823095-CDS-P-lacustris_contig1120:7383..7683Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1120 7384..7683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1120.984.1prot_P-lacustris_contig1120.984.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1120 7384..7683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1120.984.1

>prot_P-lacustris_contig1120.984.1 ID=prot_P-lacustris_contig1120.984.1|Name=mRNA_P-lacustris_contig1120.984.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp
MPHLNVGDLPLFRSLPQSGAYLRLAPTTVAGAPRAYELLLGAASSPHLEA
TPAFGELLCHPPLQALGVGKGLVQEMVLLHRRPIGAHVAFVCDAWRVVGV
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mRNA from alignment at P-lacustris_contig1120:7187..7683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1120.984.1 ID=mRNA_P-lacustris_contig1120.984.1|Name=mRNA_P-lacustris_contig1120.984.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=497bp|location=Sequence derived from alignment at P-lacustris_contig1120:7187..7683+ (Pleurocladia lacustris SAG_25_93)
TCTGCTGCCCGCACAGCGTCAACAGCGTTCTTCTTGTGCCGCCTAATCGA
CCGGCCCGATGCCTTGGTGCCGACGTTCTTCTTGTGCAACCGCTGCAGTT
CCGCGCCGTTCATGTTGGGGTTGTTGGAGATTGCTTCAGCGGCGAACGTT
GAGAGGGTGGCGCCGGTAGCCTTTGCGACGCCGCCGGAGCAGTTGACATG
CCCCATCTCAACGTAGGAGATCTTCCACTCTTTCGTTCGCTTCCCCAAAG
TGGCGCGTACCTCAGACTGGCACCCACCACCGTCGCCGGTGCGCCCCGAG
CATATGAACTTCTTCTGGGAGCTGCCTCCTCTCCCCATCTTGAAGCCACG
CCCGCCTTCGGCGAACTCTTGTGCCACCCTCCCCTTCAGGCGCTTGGCGT
CGGGAAAGGTTTGGTGCAGGAGATGGTGTTGTTGCACCGGCGGCCCATCG
GCGCTCATGTTGCTTTCGTGTGTGATGCGTGGCGTGTGGTTGGCGTT
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Coding sequence (CDS) from alignment at P-lacustris_contig1120:7187..7683+

>mRNA_P-lacustris_contig1120.984.1 ID=mRNA_P-lacustris_contig1120.984.1|Name=mRNA_P-lacustris_contig1120.984.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig1120:7187..7683+ (Pleurocladia lacustris SAG_25_93)
ATGCCCCATCTCAACGTAGGAGATCTTCCACTCTTTCGTTCGCTTCCCCA
AAGTGGCGCGTACCTCAGACTGGCACCCACCACCGTCGCCGGTGCGCCCC
GAGCATATGAACTTCTTCTGGGAGCTGCCTCCTCTCCCCATCTTGAAGCC
ACGCCCGCCTTCGGCGAACTCTTGTGCCACCCTCCCCTTCAGGCGCTTGG
CGTCGGGAAAGGTTTGGTGCAGGAGATGGTGTTGTTGCACCGGCGGCCCA
TCGGCGCTCATGTTGCTTTCGTGTGTGATGCGTGGCGTGTGGTTGGCGTT
ATGCCCCATCTCAACGTAGGAGATCTTCCACTCTTTCGTTCGCTTCCCCA
AAGTGGCGCGTACCTCAGACTGGCACCCACCACCGTCGCCGGTGCGCCCC
GAGCATATGAACTTCTTCTGGGAGCTGCCTCCTCTCCCCATCTTGAAGCC
ACGCCCGCCTTCGGCGAACTCTTGTGCCACCCTCCCCTTCAGGCGCTTGG
CGTCGGGAAAGGTTTGGTGCAGGAGATGGTGTTGTTGCACCGGCGGCCCA
TCGGCGCTCATGTTGCTTTCGTGTGTGATGCGTGGCGTGTGGTTGGCGTT
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