mRNA_P-lacustris_contig112.972.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig112.972.1
Unique NamemRNA_P-lacustris_contig112.972.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: D7FPR0_ECTSI (Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR0_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.250e-63
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F+ID HCVTN+QFAIFVKDSGYV+EAEKFGWSFALEYMLD ETI+EADEGIGRVKG+EHWVGVEGANWR  EGPRSSLK+RGNVPVA VSWVDADAYC WAGRR
Sbjct:   30 FNIDEHCVTNEQFAIFVKDSGYVTEAEKFGWSFALEYMLDAETIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKSRGNVPVAQVSWVDADAYCSWAGRR 133          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: F0XYZ8_AURAN (FGE-sulfatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYZ8_AURAN)

HSP 1 Score: 124 bits (311), Expect = 1.480e-33
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREAD--EGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F ID   V+NDQF  FV+D+ Y++EAE F WSF LE      TI ++D   G+GRV+ +  W+GV GA WR  EGP SSL+ RG+ P  H+SW DA AYC+WAGRR
Sbjct:   29 FRIDPTAVSNDQFKRFVRDTQYLTEAENFRWSFVLELTASNATINQSDAKNGLGRVQASPWWMGVFGAYWRKPEGPDSSLRGRGDHPATHISWNDASAYCKWAGRR 134          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: A0A7S2WSR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSR2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.710e-32
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREAD--EGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            FSID   V+N QF  FV+ + Y ++AEKF WSF LEY+   +T+   D   G GRVK A HW+ V+GA WR  EGP SSL+ R + PV HVS+ DA AYC WAGRR
Sbjct:  120 FSIDITAVSNSQFQKFVRATKYKTDAEKFEWSFVLEYLASKDTVDAVDGESGYGRVKDAPHWMAVQGAYWRRPEGPGSSLRGRASHPVTHVSYNDAKAYCEWAGRR 225          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: A0A7S2SNU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.480e-31
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREAD--EGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            FSID   V+N QF  FV+ + Y ++AEKF WSF LEY+   +T+   D   G GRVK A HW+ V+GA WR  EGP SSL+ R + PV HVS+ DA AYC WAGRR
Sbjct:  120 FSIDITAVSNSQFQKFVRATKYKTDAEKFEWSFVLEYLASKDTVDAVDGESGYGRVKDAPHWMAVQGAYWRRPEGPGSSLRGRASHPVTHVSYNDAKAYCEWAGRR 225          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: A0A7S2Y1G9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1G9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.240e-31
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F +D H VTN+QF  F+ D+GY ++A+KFGWSF L Y    ET  +AD  +GR++G   W+GV  A W H  GP S +++  + PV  VSW DA AYC+WAGRR
Sbjct:   52 FWLDEHAVTNEQFIDFINDTGYETDADKFGWSFVLAYFASEETTIKADNDMGRIEGDPSWLGVREATWEHPLGPDSDVEDILDHPVVQVSWNDARAYCKWAGRR 155          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: A0A2W2E7D8_9ACTN (Serine/threonine protein phosphatase n=19 Tax=Nonomuraea TaxID=83681 RepID=A0A2W2E7D8_9ACTN)

HSP 1 Score: 118 bits (296), Expect = 1.170e-30
Identity = 59/104 (56.73%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F ID  CVTN QFA FVK++GYV+EAE+FGWSF       T  + +A      V  A  WVGVEGA+WR  EGP SS+ +R N PV HVSW DADAY +WAG+R
Sbjct:   35 FLIDPVCVTNAQFATFVKETGYVTEAERFGWSFVFRQFA-TRGVMDAT-----VPDAPWWVGVEGASWRSPEGPGSSIGDRQNHPVVHVSWNDADAYAQWAGKR 132          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: UPI00197F3A2E (formylglycine-generating enzyme family protein n=1 Tax=Thermoactinospora rubra TaxID=1088767 RepID=UPI00197F3A2E)

HSP 1 Score: 118 bits (296), Expect = 1.220e-30
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F ID H VTND+FA FV+D+GYV+EAE+ GWS+     L     R +     R+  A  W GV GA WR  EGP S L  RGN PV HVSW DADAY RWAG+R
Sbjct:   35 FHIDVHAVTNDRFAAFVEDTGYVTEAERIGWSYVFAGFLPAALRRTSP----RLPDAPWWCGVAGACWRRPEGPGSDLDGRGNHPVVHVSWNDADAYARWAGKR 134          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: UPI001AE81222 (formylglycine-generating enzyme family protein n=1 Tax=Paenibacillus eucommiae TaxID=1355755 RepID=UPI001AE81222)

HSP 1 Score: 119 bits (298), Expect = 1.560e-30
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F +D   VTN+QFA FV+ +GYVS+AE+FGWSF        ETIR   +   RV GA  W+ VEGA+W   EGP SS+ +R + PV HVSW DA+AYCRWAG+R
Sbjct:   72 FLVDPCTVTNEQFAEFVQATGYVSDAERFGWSFVFHLFASPETIRSVTQ---RVDGASWWLVVEGASWDKPEGPDSSIADRLDHPVVHVSWNDANAYCRWAGKR 172          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: UPI001FD060DA (formylglycine-generating enzyme family protein n=1 Tax=Lederbergia sp. NSJ-179 TaxID=2931402 RepID=UPI001FD060DA)

HSP 1 Score: 118 bits (295), Expect = 2.750e-30
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F +D + VTN+QFA FV ++GYV+EAE+FGWS+     L TE +++    + ++     WV VEGA W + EGP S++ NR N PV H+SW DA AYCRW+G+R
Sbjct:   48 FYMDQYAVTNEQFAQFVNETGYVTEAEQFGWSYVFHLFLSTEILKKRPSRVAQIP---WWVAVEGAYWENPEGPDSTINNRMNHPVIHISWNDAKAYCRWSGKR 148          
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Match: UPI001B188F71 (formylglycine-generating enzyme family protein n=1 Tax=Bacillus sp. J14TS2 TaxID=2807188 RepID=UPI001B188F71)

HSP 1 Score: 118 bits (296), Expect = 2.850e-30
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEGIGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRWAGRR 312
            F +D + VTN+QF  FV ++GYV+EAE+FGWSF     L  ET+++  +   R  G   WV VEGA WRH EG  S++++R N PV+H+SW DA+AYC+W+G+R
Sbjct:   67 FYMDQYAVTNEQFEQFVDETGYVTEAEQFGWSFVFHLFLSEETLQQISQ---RPVGVPWWVPVEGAYWRHPEGADSTIQDRMNHPVSHISWNDAEAYCKWSGKR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig112.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR0_ECTSI1.250e-6388.46Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus si... [more]
F0XYZ8_AURAN1.480e-3353.77FGE-sulfatase domain-containing protein (Fragment)... [more]
A0A7S2WSR2_9STRA4.710e-3254.72Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNU0_9STRA4.480e-3154.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y1G9_9STRA8.240e-3150.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2W2E7D8_9ACTN1.170e-3056.73Serine/threonine protein phosphatase n=19 Tax=Nono... [more]
UPI00197F3A2E1.220e-3054.81formylglycine-generating enzyme family protein n=1... [more]
UPI001AE812221.560e-3054.81formylglycine-generating enzyme family protein n=1... [more]
UPI001FD060DA2.750e-3049.04formylglycine-generating enzyme family protein n=1... [more]
UPI001B188F712.850e-3050.00formylglycine-generating enzyme family protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig112contigP-lacustris_contig112:66194..66872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue6.9e-50
Seed eggNOG ortholog2880.D7FPR0
KEGG koko:K13444
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Formylglycine-generating oxidase activity
EggNOG OGs2QVDG@2759,COG1262@1
Ec32 ortholog descriptionSulfatase-modifying factor 2 precursor
Ec32 orthologEc-20_001020.2
EC1.8.3.7
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.7330418-CDS-P-lacustris_contig112:66193..664011622815421.7330418-CDS-P-lacustris_contig112:66193..66401Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 66194..66401 -
1693493531.6438117-CDS-P-lacustris_contig112:66193..664011693493531.6438117-CDS-P-lacustris_contig112:66193..66401Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 66194..66401 -
1622815421.7451344-CDS-P-lacustris_contig112:66765..668721622815421.7451344-CDS-P-lacustris_contig112:66765..66872Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 66766..66872 -
1693493531.6579516-CDS-P-lacustris_contig112:66765..668721693493531.6579516-CDS-P-lacustris_contig112:66765..66872Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 66766..66872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig112.972.1prot_P-lacustris_contig112.972.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig112 66194..66872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig112.972.1

>prot_P-lacustris_contig112.972.1 ID=prot_P-lacustris_contig112.972.1|Name=mRNA_P-lacustris_contig112.972.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
FSIDTHCVTNDQFAIFVKDSGYVSEAEKFGWSFALEYMLDTETIREADEG
IGRVKGAEHWVGVEGANWRHSEGPRSSLKNRGNVPVAHVSWVDADAYCRW
AGRR*
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mRNA from alignment at P-lacustris_contig112:66194..66872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig112.972.1 ID=mRNA_P-lacustris_contig112.972.1|Name=mRNA_P-lacustris_contig112.972.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=679bp|location=Sequence derived from alignment at P-lacustris_contig112:66194..66872- (Pleurocladia lacustris SAG_25_93)
TTCAGCATCGATACACATTGCGTGACAAACGACCAGTTCGCTATCTTCGT AAAAGATTCGGGCTATGTCAGTGAGGCCGAAAAGTTCGGGTGGAGTTTCG CGCTAGAGTAAGTGCCTACGGTGGTAGCAGCTTCATTGCCACTTGTTCGT TGCCTTTGTTGTTGTCCTGCACGCTGCGTCTACGACGTAACGTACCGCTG ACGAGTGTGGGTTTGGTCGGAGTGCTCTCAGAGTAGATGGAAGTAATATC TTGCAGGATACCTGGAAAATGGTTGGAAAGTCTGCGCTTGTTGTTCTACC AGCTACAACAATGGCATTAGGCATGACATGTGTGCCATGGCCTGCCAAGC CGTTCTCTGAGCCACGCTGCTGAAATCGTTTTTCATTTTGAAGATTCGTA AGGAGTGATGTCGCTGATTCGCGTGGATCCTGTGAATCGCGGTGGGCGGA TCCTGTGTCCGCTTGCCCCAGGTATATGCTTGATACCGAGACTATCAGAG AAGCGGATGAAGGCATCGGGCGTGTAAAAGGTGCAGAGCACTGGGTCGGA GTTGAAGGTGCTAACTGGCGACATTCAGAGGGACCAAGGTCTTCGCTCAA GAACCGGGGGAACGTGCCCGTGGCTCACGTATCTTGGGTGGATGCCGACG CTTACTGCCGCTGGGCTGGCCGACGGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig112:66194..66872-

>mRNA_P-lacustris_contig112.972.1 ID=mRNA_P-lacustris_contig112.972.1|Name=mRNA_P-lacustris_contig112.972.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig112:66194..66872- (Pleurocladia lacustris SAG_25_93)
TTCAGCATCGATACACATTGCGTGACAAACGACCAGTTCGCTATCTTCGT
AAAAGATTCGGGCTATGTCAGTGAGGCCGAAAAGTTCGGGTGGAGTTTCG
CGCTAGATTCAGCATCGATACACATTGCGTGACAAACGACCAGTTCGCTA
TCTTCGTAAAAGATTCGGGCTATGTCAGTGAGGCCGAAAAGTTCGGGTGG
AGTTTCGCGCTAGAGTATATGCTTGATACCGAGACTATCAGAGAAGCGGA
TGAAGGCATCGGGCGTGTAAAAGGTGCAGAGCACTGGGTCGGAGTTGAAG
GTGCTAACTGGCGACATTCAGAGGGACCAAGGTCTTCGCTCAAGAACCGG
GGGAACGTGCCCGTGGCTCACGTATCTTGGGTGGATGCCGACGCTTACTG
CCGCTGGGCTGGCCGACGGTGAGTATATGCTTGATACCGAGACTATCAGA
GAAGCGGATGAAGGCATCGGGCGTGTAAAAGGTGCAGAGCACTGGGTCGG
AGTTGAAGGTGCTAACTGGCGACATTCAGAGGGACCAAGGTCTTCGCTCA
AGAACCGGGGGAACGTGCCCGTGGCTCACGTATCTTGGGTGGATGCCGAC
GCTTACTGCCGCTGGGCTGGCCGACGGTGA
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