mRNA_P-lacustris_contig112.970.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig112.970.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI) HSP 1 Score: 947 bits (2449), Expect = 5.320e-303 Identity = 904/1871 (48.32%), Postives = 1054/1871 (56.33%), Query Frame = 2
Query: 266 MKTSMAWQDFRHSNLVSTSAPKQDGNDSDGAEEDGFVGAHSNGPQEMMMEIMDKYVQVGEALAERENDVRQLSKQVEAVKALNSDLETRVAHLTTSNERLADDEGRWYSLARELESQMDVIKKGETYSLFQDKVDEAEARLEVATDAYSTCRRRLFEVYGAVNADFKDKTSDGNDDDVDEHRQHAEVLEQLHRLTSAATEMEDALTASQDANAAAEVAREHAQAQDAELRNRLEDQVSELQNEALARDAVHRSEIDSLREASTKQARELQQAVKEASSCREARASAXXXXXXXXXXRRAAAKVVSETESNIEGVQEDLRLAQEETLIIEGHLAQARAALKASQREAERRHEAQQVAENSVQQLSGRVLELETLLQDTQLRSSQVERNLAGSSQRITELTQVAEVYQGEVAQATNKLGELQAHADMQEMRLRESLERVAELSDDMCTLRSQLDERDAAVSRAQSDAERSSHLASVATEQAERLRQELERTTEEASTTQREHAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANVALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------------------------ITRSNEALMAAQIDAETMRADADAQLEALNGRLTLKEAQTKNVGMAAAQADRTLVAAERAAATATQALANASEESRQQVAQLEDDMRSLEAQLSEARASMAQLKAVNEEQREALQRSNMRADHLEATLIASKAELDERTTALARAREELATTAAAQAAESTLLPPFVGEPAPSVNGDASADALFGSPAPDFTSSASDGGKEGASAIANGVAAGSRSAEXXXXXXXXXXXXLELRYTLESFEGQLSAMAREKVAVQKQVKELTCQSNNLRKKVAHYKRVAMESEALVEQMTDMEYGARLFLSPSVVHLDVFFCALYLHYGACMSTISPALLQVLELQQQLRDAE--GAAENLRXXXXXXXXXXXXXAAKLEVLEADSAKETHETMWRHSQVQQCNRVSPRILAEVPQANCGIDLVSLNVFRVFLCSRFIMVLFRIWQVSVVTESCDGYSCIKTVALTATSLQDEVMELRARLVDGEDNFVAKCEELAAKAQEATTARALASTLEQQRQEATSEVLELKEALQSTGEELASVRRSXXXXXXXXXXXXXXXXXVGDLEEENNRLGETTAALTSQLGQARAKVLELQEVVLSQQEEKAEMLQNVERTEEGRATLVLELGEIAKLVGCERREPEAAVSSPSILDKISLLKRHLVAAEDVLEATAQTLQETAMEGEVELQTGSSWIVSGVSRLQRRLHVAESKLSERLAIHDGGGLGDTAQALQDLAVILECDANRVSHKVMGTLNEQQATIQQQPLVTKMAVDVQNSYLNSMKKLAPAIGHEATCRVAPLLTQASELFSTGACLTSNSKGLEVLDEAASVLTSFLPISDAANPEIAEVAVQQARKEVAVLNETLRTERLMMMAFRRWGHFYLALSNEAIRKRTKEQNQARSQRDTSENASITTMEQPRMERGRSRRRSNGRGRLQLSSSDVRLMVEKEAETVALELAGEPSSSLLALVDARKEMDDIAMKAQATLRVLYAQPPLMHDANVATDGNMMVEIMEQLPDEEKLRGKIQE----------------------------TWPSPDRQANENVDVPRNDVNTFSFACRAARVVEAGGAGVTDEAHLGPPAAPMVLIGQQQTEPGDLSDVMGVPQGCADLPSVNGEDVPDPPTSVPASSSLTPPPRDLGHGVNGVKGSDGTGPVRRSSVNIVPMVNAPPGRTTGPLVEDGVSQRDRAEFLKRQREERKANRKK------SRTTSADP 5698
MKTSMAW+DFRHSNLV+TS Q G+DSDGAEEDGFVG S GP++MMMEIMDKYV GEALAERENDVR LSKQV+AV+A N +LE VA LTTSNE+LADDEGRWYSLARELE+QM+VIKKGETY+LFQDKVDEAEARLEVATDA STCR+RLFEVYGA++ DF+DKT+DG+D+DVDEHRQHA VL+QL RL SA EMEDA A+QD N+AA++ RE AQ Q+AELRNRLE QVSEL+ E RDA +SE ++LR+AS KQA+EL+QA E S+CR A XXXXXXXXXX + E+ +EGVQEDLRL QEET + GHL +ARAAL+ SQREA+RRHEAQ VAENSVQQLSGRV+ELETLLQDT+L++SQVER+LA SSQ+ITELTQVA VYQG RDAA +RA+SDAER+ H SVAT++AE LR+E+ER T EA T ++E+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AN A+L XXXXXXXXXXXXXXXXXXXXXXXX ITR NEA +AA+ DAE +A+ V AE+A EESRQQ A+L +D+R+LEAQL EA+AS QL+AV EE +E L S++ A+ LE ERT A+ARAREE A A V P SVNGD AD LFGSPAP AS GGKE ASA+ANGVAA SRSAE LELRYTLESFEGQLSAMAREKVA+QKQVKELT Q LRK+V+HYK+VA ESEA EQ +E ARL + ++ + + L A + + AL LE + Q D+E G E+L XXXXXXXXXXX AS R S VGDLE E L ETTAALTS+ GQA AK+LELQ+V+ SQQEEKA LQ V++TEE R LV+ L +IA+L+GC+R EAAVSS SILDKI+++KR L AEDVLEATAQ L++TA+EGEV L +G SWI++GVS LQRRL AE +LS + D GGLGDTAQ ++ +V+ EC+ N V+H+ A++QA++EV + TLR ERL+M+AFRRWGHFYLALSNEA+RKRTKEQNQAR Q+ E+AS + MEQ S+S+VRLMVEKEAETVA ELAG P++SLLALVDARKEMDD+AMKAQATL VLYAQPPL DANVATDG MM+EI EQLP EE L+G+IQ T PSP RQ + +VD+ + AGV +EA GPP AP V I QQ+ E K +D TG S V + NAP RTTGPLVEDGVS++DRAE+LK+QREERKANRKK SRT SA+P
Sbjct: 1 MKTSMAWKDFRHSNLVATSVSVQGGDDSDGAEEDGFVGTTSKGPEDMMMEIMDKYVHAGEALAERENDVRHLSKQVKAVRADNKELEAEVARLTTSNEKLADDEGRWYSLARELENQMEVIKKGETYTLFQDKVDEAEARLEVATDANSTCRKRLFEVYGAISPDFQDKTNDGSDEDVDEHRQHATVLDQLRRLKSATKEMEDAFAAAQDTNSAAKLVREQAQVQEAELRNRLEAQVSELREEIATRDAKSQSEQNALRDASAKQAQELRQAFDELSNCRAACXXXXXXXXXXXXXXXXXXXXXTTIEAKLEGVQEDLRLTQEETRTVTGHLTEARAALETSQREAKRRHEAQDVAENSVQQLSGRVIELETLLQDTRLQASQVERDLADSSQKITELTQVAHVYQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDAAATRAESDAERALHGTSVATKEAEGLREEVERLTVEALTMKQEYAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--ANAAVLTARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITRVNEARIAAETDAE--------------------------------RAESAKVRAEKAW-----------EESRQQGAELINDVRALEAQLCEAKASATQLEAVIEEHQEKL--SSLNANQLE-----------ERTIAVARAREEWAAEAXXXXXXXXXXXXVVAAPVLSVNGDTCADVLFGSPAPGSNGDASTGGKE-ASAMANGVAAVSRSAEAEQLQAHADAMELELRYTLESFEGQLSAMAREKVAIQKQVKELTGQCTTLRKQVSHYKKVAKESEAQGEQDEVIELRARLVEAEDILVVK----SQELAAKAQEAVSATALANALEHRIQEADSEVLGLRESLESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XASARASASDLQCALSKISELQSVVGDLEREKIHLNETTAALTSEFGQASAKLLELQDVIHSQQEEKAIALQTVDQTEEARTALVVALRDIAELIGCDR-VGEAAVSSLSILDKIAVVKRQLATAEDVLEATAQALRQTAVEGEVALDSGWSWIINGVSSLQRRLQAAELELSRSAVVQDDGGLGDTAQVVESASVVGECNGNSVTHE---------------------------------------------------------------------------------------------------ALRQAKEEVETVKATLRKERLLMLAFRRWGHFYLALSNEALRKRTKEQNQARIQKGKPESASSSVMEQTXXXXXXXXXXXXXXXXXXXSTSEVRLMVEKEAETVARELAGAPTASLLALVDARKEMDDVAMKAQATLGVLYAQPPLTQDANVATDGTMMLEI-EQLPHEENLKGEIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSPGRQTSASVDMNVD-------------------AGVGEEALPGPPIAPTVPIDQQKAE--------------------------------------------------AAKATDSTG----SRV----LKNAPSCRTTGPLVEDGVSKKDRAEYLKKQREERKANRKKGMQASTSRTRSAEP 1629
BLAST of mRNA_P-lacustris_contig112.970.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI) HSP 1 Score: 704 bits (1816), Expect = 8.850e-215 Identity = 745/1812 (41.11%), Postives = 920/1812 (50.77%), Query Frame = 2
Query: 266 MKTSMAWQDFRHSNLVSTSAPKQDGNDSDGAEEDGFVGAHSNGPQEMMMEIMDKYVQVGEALAERENDVRQLSKQVEAVKALNSDLETRVAHLTTSNERLADDEGRWYSLARELESQMDVIKKGETYSLFQDKVDEAEARLEVATDAYSTCRRRLFEVYGAVNAD-FKDKTSDGNDDDVDEHRQHAEVLEQLHRLTSAATEMEDALTASQDANAAAEVAREHAQAQDAELRNRLEDQVSELQNEALARDAVHRSEIDSLREASTKQARELQQAVKEASSCREARASAXXXXXXXXXXRRAAAKVVSETESNIEGVQEDLRLAQEETLIIEGHLAQARAALKASQREAERRHEAQQVAENSVQQLSGRVLELETLLQDTQLRSSQVERNLAGSSQRITELTQVAEVYQGEVAQATNKLGELQAHADMQEMRLRESLERVAELSDDMCTLRSQLDERDAAVSRAQSDAERSSHLASVATEQAERLRQELERTTEEASTTQREHAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANVALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEITRSNEALMAAQIDAETMRADADAQLEALNGRLTLKEAQTKNVGMAAAQADRTLVAAERAAATATQALANASEESRQQVAQLEDDMRSLEAQLSEARASMAQLKAVNEEQREALQRSNMRADHLEATLIASKAELDERTTALARAREELATTAAAQAAESTLLP-PFVGEPAPSVNGDASADALFGSPAPDFTSSASDGGKEGASAIANGVAAGSRSAEXXXXXXXXXXXXLELRYTLESFEGQLSAMAREKVAVQKQVKELTCQSNNLRKKVAHYKRVAMESEALVEQMTDMEYGARLFLSPSVVHLDVFFCALYLHYGACMSTISPALLQVLELQQQLRDAEGAAENLRXXXXXXXXXXXXXAAKLEVLEADSAKETHETMWRHSQVQQCNRVSPRILAEVPQANCGIDLVSLNVFRVFLCSRFIMVLFRIWQVSVVTESCDGYSCIKTVALTATSLQDEVMELRARLVDGEDNFVAKCEELAAKAQEATTARALASTLEQQRQEATSEVLELKEALQSTGEELASVRRSXXXXXXXXXXXXXXXXXVGDLEEENNRLGETTAALTSQLGQARAKVLELQEVVLSQQEEKAEMLQNVERTEEGRATLVLELGEIAKLVGCERREPEAAVSSPSILDKISLLKRHLVAAEDVLEATAQTLQETAMEGEVELQTGSSWIVSGVSRLQRRLHVAESKLSERLAIHDGGGLGDTAQALQ-DLAVILECDANRVSHKVMGTLNEQQATIQQQPLVTKMAVDVQNSYLNSMKKLAPAIGHEATCRVAPLLTQASELFSTGACLTSNSKGLEVLDEAASVLTSFLPISDAANPEIAEVAVQQARKEVAVLNETLRTERLMMMAFRRWGHFYLALSNEAIRKRTKEQNQARSQRDTSENASITTMEQPRMERGRSRRRSNGRGRLQLSSSDVRLMVEKEAETVALELAGEPSSSLLALVDARKEMDDIAMKAQATLRVLYAQPPLMHDANVATDGNMMVEIMEQLPDEEKLRGKIQETWPSPDRQANENVDVPRNDVNTFSFACRAARVVEAGGAGVTDEAHLGPPAAPMVLIGQQQTEPGDLSDVMGVPQGCADLPSVNGEDVPDPPTSVPASSSLTPPPRDLGHGVNGVKGSDGTGPVRRSSVNIVPMVNAPPGRTTGPLVEDGVSQRDRAEFLKRQREERKANRKKSRTTSA 5692
MKTSMAWQDFR SN +T QDG+DS GAE DGF G S+ P++M++E+MDK GEALAERE+DVRQLSKQV+A KA N LET VA LTTSNE+LADDEGRW+S+AREL+S+M+ +K VYGA++A +DK++DG+ +DVDE RQH+ L+QL L SA EMEDAL A++D N+A E+A+E AQ ++AE+RNRL+ +VSEL+ E + RDA +SE +LR+AS KQA+EL+QA++E + CR A A+A R AA ++ + ++ +EG QED++LAQE T + GHLA+ QQLS RV+ELETLLQDT+L++SQ E +LA SSQ++TEL++VA Y+G+VA +DAA SRA+ DAER H SVA QAE LR+E+ER A +RE+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RANVA+LXXXXXXXXXXXXXXXXXXXXXXXXXXXX R NEA MAA+ DA + +++ VG A EESRQQ AQL +D+R+L+AQLSEARAS L+A EEQR AL+ S+++ + LE IA + RAR+E A AA A P P V P VNGD A+ LFG AP +A GGKE ASAIANGVA S AE LELR+T ESF+ QLSAMAREKVA+QKQVKE+T Q LRK+V+HYK+VA E EA EQ +E ARL A ++E+ Q+L AAK + E DS++ T+ AL + S +L+ AL E L SV R LE E L ETT AL S+ A AK Q + E RATL++ L +IA+LVGCER EA VSS I DKI+ +K+ L AEDVLEATAQ L TA+EGEV L +G SWI GV+ LQRR+ VAES+LS R D GGL D AQ + + ++EC+ N V H EVA++QA++EV + TLR ERL+M+AFRRWGHFYLALSNEA++KRTKE+NQARS+R E + MEQ R + GRSRRR GR LQL+SS+VRLMVEKEA TVA ELAG P++SLLALVDARK+MDD++MKAQATL VLY+QPPL DA+VA DG+MM +I E+LP EE G+ PSP RQ + ++ VEA GA +++EA PP AP+V I QQ++E +D+ GV + + NAPPGRTTGPLVEDGVS+++RAEFLKRQREERK NRKK S+
Sbjct: 1 MKTSMAWQDFRRSNQAATGVSSQDGDDSAGAEGDGFAGITSHEPEDMIVELMDKSFHAGEALAEREHDVRQLSKQVKAAKATNQQLETEVARLTTSNEKLADDEGRWHSIARELQSRMEAFRK----------------------------------VYGAISATGVQDKSNDGSGEDVDEQRQHSTALDQLRWLKSATREMEDALAAARDNNSAVELAKEQAQTREAEVRNRLQARVSELEEEIVVRDANSQSEQSALRDASAKQAQELRQALEEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEGTQTVTGHLAEXXXXXXXXXXXXXXXXXXXXXXXXXAQQLSQRVVELETLLQDTRLQASQAEGDLADSSQKLTELSKVAHTYRGQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAAASRAEGDAERVLHGTSVAIRQAEGLRKEVERLKAGAMAMKREYAEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVLALRQELE--RANVAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVNEARMAAEADA--------------------RRSESARVGAEMAW-----------------------EESRQQGAQLTEDVRALKAQLSEARASATHLEAEIEEQRGALEMSSLKVNQLEKRAIAVE-----------RARDEEAPETAASATVGAPGPLPVVAAPVFRVNGDTCANVLFGVTAPANNGNAPTGGKEQASAIANGVAPCSTGAEAEQLQAHAEAMELELRFTWESFQRQLSAMAREKVAIQKQVKEVTGQCTTLRKQVSHYKKVAKEREA-TEQHEVIELRARL---------------------------EEAQRTLVEMSQEL------------------------AAKTQ--ETDSSRALANTLEHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASALASAS-------------------------------------------------------KLQSALSKVSE-LESVVRG--------------------LEGEKLHLNETTEALASR---ASAKXXXXXXXXXXXXXXXXIASQTFDEAEGARATLMMTLRDIAELVGCER-SGEAVVSSLRIADKITEVKQQLATAEDVLEATAQALLRTAVEGEVALGSGWSWITRGVTSLQRRMQVAESELSRRAVAQDDGGLRDRAQTEERSTSAVVECNGNTVMH--------------------------------------------------------------------------------------------------EVALRQAKEEVETVKATLRKERLLMVAFRRWGHFYLALSNEALKKRTKEKNQARSRRAKPEITPSSMMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVTVARELAGAPTASLLALVDARKDMDDVSMKAQATLGVLYSQPPLTQDADVAKDGSMMRKI-ERLPHEE---GEALNALPSPGRQMRASANIS----------------VEAAGANLSEEALPEPPTAPIVPISQQESEAAQAADLAGVTRA---------------------------------------------------------LNNAPPGRTTGPLVEDGVSKKERAEFLKRQREERKLNRKKGMQASS 1413
BLAST of mRNA_P-lacustris_contig112.970.1 vs. uniprot
Match: A0A6H5JLN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN5_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.160e-10 Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 3
Query: 6033 RATPPFMFNPTTGPPPTVPPSAAIS-HAQHPVHPPVAFNVNEAVERALTEARRDAGLAERKAAF 6221
RA P MFNPT PPP PPSA S HA P+HP +AFNVNE+VERAL E +RDAG AER A F
Sbjct: 177 RAPSPRMFNPTAVPPPIAPPSATTSLHAPPPMHPTMAFNVNESVERALKEVKRDAGQAERNAMF 240 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig112.970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig112.970.1 >prot_P-lacustris_contig112.970.1 ID=prot_P-lacustris_contig112.970.1|Name=mRNA_P-lacustris_contig112.970.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1891bp MKTSMAWQDFRHSNLVSTSAPKQDGNDSDGAEEDGFVGAHSNGPQEMMMEback to top mRNA from alignment at P-lacustris_contig112:22735..45897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig112.970.1 ID=mRNA_P-lacustris_contig112.970.1|Name=mRNA_P-lacustris_contig112.970.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=23163bp|location=Sequence derived from alignment at P-lacustris_contig112:22735..45897+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig112:22735..45897+ >mRNA_P-lacustris_contig112.970.1 ID=mRNA_P-lacustris_contig112.970.1|Name=mRNA_P-lacustris_contig112.970.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=11346bp|location=Sequence derived from alignment at P-lacustris_contig112:22735..45897+ (Pleurocladia lacustris SAG_25_93)back to top |