mRNA_P-lacustris_contig112.969.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig112.969.1
Unique NamemRNA_P-lacustris_contig112.969.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig112.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig112contigP-lacustris_contig112:10679..17971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size956
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig112.969.1prot_P-lacustris_contig112.969.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig112 10732..17704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.157857-UTR-P-lacustris_contig112:10678..107311622815421.157857-UTR-P-lacustris_contig112:10678..10731Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig112 10679..10731 -
1693493531.2718117-UTR-P-lacustris_contig112:10678..107311693493531.2718117-UTR-P-lacustris_contig112:10678..10731Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig112 10679..10731 -
1622815421.2118433-UTR-P-lacustris_contig112:17704..179711622815421.2118433-UTR-P-lacustris_contig112:17704..17971Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig112 17705..17971 -
1693493531.2964306-UTR-P-lacustris_contig112:17704..179711693493531.2964306-UTR-P-lacustris_contig112:17704..17971Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig112 17705..17971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.1801562-CDS-P-lacustris_contig112:10731..111231622815421.1801562-CDS-P-lacustris_contig112:10731..11123Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 10732..11123 -
1693493531.2808316-CDS-P-lacustris_contig112:10731..111231693493531.2808316-CDS-P-lacustris_contig112:10731..11123Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 10732..11123 -
1622815421.193661-CDS-P-lacustris_contig112:17460..177041622815421.193661-CDS-P-lacustris_contig112:17460..17704Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 17461..17704 -
1693493531.2885742-CDS-P-lacustris_contig112:17460..177041693493531.2885742-CDS-P-lacustris_contig112:17460..17704Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig112 17461..17704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig112.969.1

>prot_P-lacustris_contig112.969.1 ID=prot_P-lacustris_contig112.969.1|Name=mRNA_P-lacustris_contig112.969.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=212bp
MELKGGGGTESVTGGVSSREGEGRRRDDEARDSGGGNGTEGRGGGGNGPG
GRGGGTESVTGDVSSREGEGRRRDHEARDSGDMAARTSPDSMSESEKAAN
ISTRPAALSAAFSEATWLRMDHATRQDILQNLGLNVQRGAKEADELLAQA
QREELDRLENSARDSTISLAQAGRLALDLAAEEQAFKQKKQNLDAKLKRL
YKTKLNPLADC*
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mRNA from alignment at P-lacustris_contig112:10679..17971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig112.969.1 ID=mRNA_P-lacustris_contig112.969.1|Name=mRNA_P-lacustris_contig112.969.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7293bp|location=Sequence derived from alignment at P-lacustris_contig112:10679..17971- (Pleurocladia lacustris SAG_25_93)
TCCACGAATGGCGGTTTTGGCAAAGGAACGGAATGTTTCATCGAAGCTAC
CTCCAATCATTTGGCGGAGGAAGCTTACAACATGGGCACCTACTCTGAAG
AGGCTGATTTCCTTCGTCTCAAGGCGTCTTTCAAGTACAAAATTCGGAGA
CGTTTTTCTTTTGTCTTGCTCAATTCCTGTCCATGCGAACTCGTGATTTC
TTCCGAGACTGTGGTTAAGACATGGCTGAACTACCACCTCGACCGATCGG
TTGGGAACTAGGTGGAAATGGAACTGAAGGGAGGTGGAGGTACAGAAAGT
GTTACTGGAGGCGTTTCTTCTAGAGAAGGAGAGGGGAGAAGAAGAGATGA
TGAAGCTAGAGATAGTGGAGGTGGAAATGGAACTGAAGGAAGAGGTGGAG
GTGGGAATGGACCTGGAGGAAGAGGTGGAGGTACAGAAAGTGTTACGGGA
GACGTTTCTTCTAGAGAAGGAGAGGGGAGAAGAAGAGACCATGAAGCAAG
AGATAGTGGAGGTGAGGAGAGCAAACACTTCGATCCTGCGGATCTTCCAT
ACAACCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGAGAAAGCAGTGCAAGTAGGCCGAAGAAAAATCCCAGAGAAGAGTGCAG
CGAAAGTAGTGATGAGGCAATCTCAGCGAAGAGAAGCAGGAGAGGGAGTG
TGTCATCTTCGCTTGCAAGTTCTTTGAATCCGGTTCGATTATCCCCGTCT
GTTTCCTTCGCACCCCCGCATCAGGGAAGACTGCGGTTTAGAACATGTTT
TGGCGTTTGTTTCTGTCCGCCTAAGACCGATCGGCCAGCCGGTTAGCGCG
GTCGATGGTGAAAAAAAAAAACACGCACACACACACACAAGAGACCATGA
AGGAAGAGATAGTGGAGTTGAGGGGAGCAAAAACTTGTAGAAGCCGAATC
TTAACCCATTAGAAAAGTCAGCGCTGACTAGTCTAATGGGTTAAGTTTCG
GCTTCTACAAAAGTTAGTCGTGGGTTCGAATCCCGGCGTCAACTGTTTGT
GGGGCTTTTTTCCCGGGGAAAAAAGCGTTCCTCCTGAGACCTTGGATACT
CTTGGATAGAGTGGAGGTGACGGAGAGAGTCCTAGGGACCCTGTGAACAC
TCTGCGATTGAGTGAGGTGACGGACGCCGTTAATGAAGCGAAACAGAAAC
CTGAGATGGATAGTAGCGCTGGCGATAGTAGCGCTGGCGAGGGCAGCGGT
ACCCTCCTCGGAGTGAAAGTGCCGGGTCATCGGACCCCCACGACAAACTT
TTGTAAAAGCCTAAACTTAACCCATTAGACAAGTCAGCGCTGACTAGTCT
AATGGGTTAAGTTTCAGCTTCTACGGTACCCTCCTCGAGTGAAAGTGCCG
GGTCATCGGACCCCCGACAAACTTTTGTAAAAGCCTAAACTTAACCCATT
AGATAAGTCAGCGCTGACTAGTCTAATGGGTGAAGTTTCAGCTTCTACAA
ACTTCGATCCTGCGGATCTTCCACACAACCGTCAGCAGCAGCAGCAGCAC
CAACAACGAGAAGAAGAGACCATGAAGCAAGAGATTGTGGAGGTGAGGAG
AGCAAACACTTCGATCCTGCGGATCTTCCATACAACCGTCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGAGAAAGCAGTACAAGTAGGCCGAACAAAAATC
CCAGAGAAGAGTGCAGCGAAAGTAGTGATGAGGCAAACTCAGCGAAGAGA
AGCAGGAGAGAGAGTGTGTCATCTTCGCTTGCAAGTTTTTCGAATCCGGT
TCGATTATCCCCGTCTGTTTCCTCCGCCCCCCCCGCATCAGGGGAGACCG
CGGTTTTACAACACGTTTTGGTGTTTGTTTCTGTCCGCCTAAGACTGACG
TCTTTTCCTTGGTCAGCCGATTAGCGCGGTCGATGCTAATAAAACACACA
CACACACACACACAAATAGGGTGTGATCAAATTTGCCTCCGTATGATGGC
AGGATTTTTTTTTCCACACACCCTCACAGTCCCGCGATGTCGATAAGAAT
TCGAAACTATGCTTATCGCTATTCCGCTGAACATACGGCTCGCTTCGCTC
GCCGCTGCTTCTCAATTTGAGGCGGAAATCCTGTTATAAGCTGAAACTTA
GCCATTAGACTAGTCAGCGCTGACTAGTCTAATGGTTAAGTTTCGGCTTC
TACAAAAGTTTGTCGTGGGGGTCCGATGACCCGGCACTTTCACTCCGAGG
AGGGGTACCGCTCCCCTCGCCAGCGCTACTATCCATCTAAGGTTCCTGCT
TCGCTTCTTTAACGGCGTCCGTCACCCCCGCTCAATCGCAGAGTGTTTCC
ATGGTCCCTAGGACTCTCTCCGTCACCTCCACTCTATTTATCCAAGAGTA
TCCAAGGTCTCAGGAGGAACGCTTTTTTCCCCGTGACGCCGGGATTCGAA
CCCACGACTAACTTTTGTAGAAGCCGAAACTTAACCATTAGACTAGTCAG
CGCTGACTAGTCGGCGGCAAGCTGGTGCGAGGAGAATAATACGATGATCC
CCGGACGTGCAAAAGCTTAACGTTCGGGGTGAGGGGCGCAGCTGATAACA
ATACAGCTGCGTGGGTACCGAGGAAGGTCCCAGCCAGATCCCCCTCGGTA
AAGCATACATCCTTGGTGTGAATCCAATCAACACCACCGATGAAGAAAGA
ACATTGTCCTTGGTCCTTGACTGAGAGTCCGAGCGTGTTACGGGAGCGTA
TTAGCGAGAGAGCGAGAAGCATCAGGGTAGCGGTTTGGACTGATTTGGAG
CAGTACAGCGGAAGTTAGAGAGCTTGGGGCAGTCCGATCGTAAGTCTAGG
CGAACCAGAGGTCGAGGTGAGAGACGTGTGTAGGAGCTTGATTTCCTTAA
GTAGCACGTTAAAACCACCCGTAACAGTACCACGCGAAAAAACAATCGAA
GGCCAAAAAAATTGGTATTGCACTGTGCCGTGGAGAGATCCAAGAGGGTG
ACAATCGTAGTTTTGCTATTGAGGCTCTAGCTGTGGCGCTATGGGCGAAC
AACCGCCTCGATCAAACAGGGGCCGAGAAGCAGCGAAACATCATCTTTGG
GTCGAGATATGGCGAAGAAGGTGATATGGGCGCTGGCGTCGTCAGGGTGG
GGCTTATTCTCCGAAAAAAAAAATTGATCATGGAGCACGGAACGTAAAAT
CCTATCCCTGATTGGCTAACAACACCACAAAAATTTCCTGCAAATAACTG
CAGCCACCCAGATTCTATGTTTTGCTGATCCCGCCGCACGGATTTTTTTC
AAGGATGAGGAGTACCTGCTACAGCAGTAACTTACCGCTATCAAACTTGC
CGGGTAGGTAAATTAACCTTTGTTTATTGCGGAACTTATATGGTTCTCAA
GGAGATCTCCGTTATCCGAAGGGGTACCCGATATATTCAAGCCGTTGAGC
CCCCTTTCAAATCCAACATAGGAGACCACAAACCATTGACAGCATAGAAA
TACGACATACCACGAAACGACGTGCAATACAAGATTTTCATTCACACAGG
GACGGCATATTTTCGTCACTGTATAGGTGCATACTTACTGCGGTACGTCC
CAACAATTTCTGATCTAGAGTTAGTACCGGACGGGGTACTGTCCCATCCC
TGATCATTTTAAGGAACGCGTTCCTTCCTTAAAATGGTTCAATAGTCCAC
TTGGAACGGGCTCATCGGTGGCAAAAGGCGCGAGCGAACGTCTTATCTGT
TTGGCTCGAGATGTGTGAACGGATGTGTGTAATCACTTGGGCATGTCCGT
GCCACACGTGCTGTCGGCTACCGATTGCGGCGTCATCGTATTGCCAGCAG
AGCGCGGTGAAAACCGCGCGTGTTCGCTCACGAGGCGGCGACTAACCGTG
CGTAGGCCTTGACCGTAGGAGTTGGTCTTGATCGTCGAAGTCAGGTCCCC
TCGGGCTCCAGCTGCTCGCGTACCAGCTTGCCGCCGTCACATCCCTCCAG
CATAGGGCGCGGTGAAAACCGCGCATCTTTGCTAACAAGGCGGCGACTCG
CAGTGCGGAGGCCTTGACCGTAGGAATCGGTCTTGCTCGTCAAATGGTGC
CCACGGGCTCCAGCTCCTCGCCTCTGCAGGGACTCGTCCTTCCCTTGGCC
GTTGTCCGACGGAGATGGCCTTGACCGCAAATGACGATATTGCCCGAGAA
AGTGACCTTGACCGCGGAGGACAACCTTGCCCGGGTGTTATAGTATTTGG
TATTGCATAGAAATGAGAATAGGCGTTGGCCGGTCATGCCAGGAAGGCGC
GATCGGGTATTTTGAGTTTCAGCCCACACCCTGTCAGAGCTCTGCTGGAG
CGAGGGCAGGAGGTTGTGCTGAAGATAATAAGAACTGCGGAACTGGCAAG
GAAAAGAGCCTTAGAACCTCGTGTGTGTTGAGCTGGAGCCCATCTGAGTC
ACTGGAACCCACGATCTCATTACACTGGCGTCCGTCAGCGGTGAGAGCTT
GACCTTTTCTTGGTTTTGTCCAGCTTTTATTGTTCTTTAGCTTGGTGCTG
GGGTCCTATGAGCAAGATAATTTCACCAGTTGGCAGCAATGACTCGGCTT
CATCGAGTCCAGTTCCGACTTCATCGCCTGCAAGCACGGTAGACACAAAT
GCCCTCGACAGTTCAATCGACCCGCGTACCACGATTCCTGGTGACACACT
GCTGTATCAGACCACCCGCACTTCTGCATCTAGCCCGCTTGTCCGCAAGA
TGACCGACACTAGAAGCGTGAGTGACTCCAGCCACCAGATCGATTTCGAG
TCACGCGCATGCATTCAGTCGATTGAAGAGAGAAGCGCATATGTTAGCGA
TGTAGCCATCTCTGCTGCCCCATACCGCTCCACCATCTCTCACGGAGCCA
GTCAGTTGAGAGCATCCCTGACTGCTCCTGGAGCATGCGCGCCTGGCATC
GCGCTGCGTGCTCCTGGTCTGGACCAACCGCTGGCTAGCGAGGAAGCTCC
AACCACCCGAGATCCGACTGGAATTCTGCGGGCCTGTAGAAGCCGAAACT
TAATCCATTAGACTAGTCAGCGCTGACTAGTCTAATGGGTTATGTTTCGG
CTTCTACAAAAGTTAGTCGTGGGGTCCGATGACCCGGCACTTTCACTCCG
AGGAGCGTATCGCTTCCCTCGCCAGCGCTACTATCCATCTAAGGTTCCTG
TTTCGCTTCATTAACGGCGTCCGTCACCCCACTCAATCGCAGAGTCTTTG
CAGGGTCCCTAGGACTCTCTCCGTCACCTTGTAGAAGCCAAAACTTAACC
ATTAGACTAGTCAACGCTGACTAGTCTTATGGTCAAGTTTCGGCTTTTAC
AAAAGTTAGTCGTGGGGTCCGATGACCCCTATTCGAACCCACAACTAACT
TTTGTAGAAGCCGAAACTTAACCCATTAGACTAGTCAGCGCTGACTAGTC
TAATGGGTTTCGACTTCTACACACTCTATCCAAGAGTATCCCAGGTCTCA
GGAGGAACGCTTTTTTCCCCGGGAAAAAAGCCCCACAAACAGTTGACGGC
GGGATTCGAACCCACGACAAACTTTTGTAGAAGCCGAAACTTATGGTTAA
GTTTCGGCTTCTACAGGCCACCCAGGATGGAGTGCTTCAGGCCACTCACG
ATCTCCGAGCCGGCGCGCTCACATCGGTTTCACCCTTGGAGGAAGCGCAC
ACCCCAGACGTTCTGCGAGCCGGCGCGCTCCCGGACGTTCTACGAGCCGG
CGCGCTCTCGGCGGTGACTGCAGGTGCGCTCTCTGCGATAGCCGCCCTCG
GGTTTGAGCTCACCACCCAAGATGGACGGGATTCTGGGTACCTTGGCTCC
GAACCCCAAGACGCACAAGACGGTACTGCTGTACCGGGGCGCCTGGGCTC
CGCGTCGCAAGATGAACGAGCGGGCGCGCTCCCAGCAGCCCCCTCGTTGT
TGTCCGGGCTCAGGACGGTGGGCTCCGCGCGCCTGCGTCTCGGGATGCAG
GCCTCGAATCTTTTCATTCGCAGAAAAAGCACACCCTTGCAATCCGCCCG
TCTGACCTCAGGTCCCTGCGCGGACAAGGGACGTTGGCCCCTCTTGTAGC
GCCACCACCGCGACAGGCTGCGCCGGCTCCTACCCCTAGGCCAGCACGCG
TCATGCACCATTTTGCTCGAGCCGAGGCGGAGCCCTCCTATACAGCAGTG
CAGAGTGAAATTGGTTTTGTCGATCCCCAACCTGTGCAAGAACCACTTGA
AATTAGAGTGCACCCAATATTGACATCTGGACCGCGGCTAACTTCAATGC
CGATTTTGCGATTGTCGCGCTATCACACTTTAATGCCTGGCGCCACCGAG
TACCCCTCTCTGGCAATACAGTAGATGTTGTATGACCGTTCAAGCATCCC
TTTGGCTCCAACTTTGACGATTCCCCTGCTGCGCACCCACTTCAGCGCGC
GTCTGACGACCCACGCCGCTTTGAAACAGCACCGAGGACGAATTTTTCAA
TTGTGCTGCAACCGCCCACCACTCGTGAAAAATCGAGTCGAGTTTTGACT
GCACCGATTTCTCCTGCTGCTCCACCTCAACAGAGGGCTTTTGAAACATC
GAGTCGAATTGTTGACCCACCTCTTCCCCCCGCTACGAAGCTTCGACGCT
CAAAACGTTTAGCTAGCCGGGCGAACAAGTCGGCCGTACTCGATGCTCCT
GCAGTTTCCTCACTACGGGTTGATAATGTCACCAGCGATGCTTCACCCCG
CCTTGCAAAATCTGATGAAATCAGCTCACGTCGCCATTTTCGGCCCCCCC
CTGCTGATTTCAACGGATGGAATTTCAACTAATCTCCACCGACGACAGAT
ATGGCGGCTCGGACATCCCCAGACAGCATGTCCGAATCGGAAAAAGCCGC
GAATATCAGCACGAGACCGGCGGCGCTCTCGGCCGCATTCTCCGAGGCAA
CCTGGCTCAGGATGGACCACGCCACCCGCCAGGACATCCTCCAAAACTTG
GGCCTCAACGTGCAACGTGGGGCGAAGGAGGCAGACGAATTGCTAGCACA
AGCACAACGGGAGGAGCTGGATCGCCTCGAAAATTCGGCGAGGGACTCAA
CTATATCCCTGGCGCAAGCGGGGCGTCTCGCCCTCGACCTCGCCGCAGAA
GAACAAGCTTTCAAGCAGAAGAAGCAAAACCTGGACGCAAAACTCAAGCG
GCTATACAAGACGAAACTTAACCCATTAGCTGACTGCTGACTAGTCTAAT
GGGTTAACCCCCTTAGGACGCGCTCGCAAAATCACGATTTCCC
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Coding sequence (CDS) from alignment at P-lacustris_contig112:10679..17971-

>mRNA_P-lacustris_contig112.969.1 ID=mRNA_P-lacustris_contig112.969.1|Name=mRNA_P-lacustris_contig112.969.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1272bp|location=Sequence derived from alignment at P-lacustris_contig112:10679..17971- (Pleurocladia lacustris SAG_25_93)
ATGGAACTGAAGGGAGGTGGAGGTACAGAAAGTGTTACTGGAGGCGTTTC
TTCTAGAGAAGGAGAGGGGAGAAGAAGAGATGATGAAGCTAGAGATAGTG
GAGGTGGAAATGGAACTGAAGGAAGAGGTGGAGGTGGGAATGGACCTGGA
GGAAGAGGTGGAGGTACAGAAAGTGTTACGGGAGACGTTTCTTCTAGAGA
AGGAGAGGGGAGAAGAAGAGACCATGAAGCAAGAGATAGTGGAGATGGAA
CTGAAGGGAGGTGGAGGTACAGAAAGTGTTACTGGAGGCGTTTCTTCTAG
AGAAGGAGAGGGGAGAAGAAGAGATGATGAAGCTAGAGATAGTGGAGGTG
GAAATGGAACTGAAGGAAGAGGTGGAGGTGGGAATGGACCTGGAGGAAGA
GGTGGAGGTACAGAAAGTGTTACGGGAGACGTTTCTTCTAGAGAAGGAGA
GGGGAGAAGAAGAGACCATGAAGCAAGAGATAGTGGAGATATGGCGGCTC
GGACATCCCCAGACAGCATGTCCGAATCGGAAAAAGCCGCGAATATCAGC
ACGAGACCGGCGGCGCTCTCGGCCGCATTCTCCGAGGCAACCTGGCTCAG
GATGGACCACGCCACCCGCCAGGACATCCTCCAAAACTTGGGCCTCAACG
TGCAACGTGGGGCGAAGGAGGCAGACGAATTGCTAGCACAAGCACAACGG
GAGGAGCTGGATCGCCTCGAAAATTCGGCGAGGGACTCAACTATATCCCT
GGCGCAAGCGGGGCGTCTCGCCCTCGACCTCGCCGCAGAAGAACAAGCTT
TCAAGCAGAAGAAGCAAAACCTGGACGCAAAACTCAAGCGGCTATACAAG
ACGAAACTTAACCCATTAGCTGACTGCTGAATATGGCGGCTCGGACATCC
CCAGACAGCATGTCCGAATCGGAAAAAGCCGCGAATATCAGCACGAGACC
GGCGGCGCTCTCGGCCGCATTCTCCGAGGCAACCTGGCTCAGGATGGACC
ACGCCACCCGCCAGGACATCCTCCAAAACTTGGGCCTCAACGTGCAACGT
GGGGCGAAGGAGGCAGACGAATTGCTAGCACAAGCACAACGGGAGGAGCT
GGATCGCCTCGAAAATTCGGCGAGGGACTCAACTATATCCCTGGCGCAAG
CGGGGCGTCTCGCCCTCGACCTCGCCGCAGAAGAACAAGCTTTCAAGCAG
AAGAAGCAAAACCTGGACGCAAAACTCAAGCGGCTATACAAGACGAAACT
TAACCCATTAGCTGACTGCTGA
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