mRNA_P-lacustris_contig1119.966.1 (mRNA) Pleurocladia lacustris SAG_25_93
|
Overview
Homology
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A6H5L2M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M4_9PHAE) HSP 1 Score: 203 bits (516), Expect = 3.630e-60 Identity = 111/188 (59.04%), Postives = 123/188 (65.43%), Query Frame = 2
Query: 38 SCL--LAAVLVGIVPSSESFLSVPRAAVAGGLSGSVRTGRRGCSGTRAWPGANAMEILPPISRRSAPAGAAGREVAANTWDSGATAATEGGEEF----SGTCTCRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDDPPEGGEGAWRSPLTGTLR 583
SCL LAA LVGI P SE FL PR+AVA G SG+ GRRGC R +++ VAAN+ D TAAT G + T TCRNCKQQF +DN G+CSYHPGLF+GRLNR+NDVDTSGLEYFWSCCGE D SHPGC G H SYDDPPEGG+GAWRSPLTGTLR
Sbjct: 9 SCLVLLAAALVGITPGSEGFLGAPRSAVAAGRSGTA--GRRGCC--RTTSARQGGQVI----------------VAANSRDGEDTAATGGDVHLVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVNGKHASYDDPPEGGDGAWRSPLTGTLR 176
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: D7G2H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H8_ECTSI) HSP 1 Score: 198 bits (503), Expect = 5.740e-57 Identity = 114/198 (57.58%), Postives = 124/198 (62.63%), Query Frame = 2
Query: 17 NSLML----PRSCL--LAAVLVGIVPSSESFLSVPRAAVAGGLSGSVRTGRRGCSGTR-AWPGANAMEILPPISRRSAPAGAAGREVAANTWDSGATAATEGG--EEFSGTCTCRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDDPPEGGEGAWRSPLTGTLR 583
NSLM SCL LAA LVG+ P SE FL P+ AVA G SG TG RGC T A G + VA + D ATAAT G + T TCRNCKQQF +DN G+CSYHPGLF+GRLNR+NDVDTSGLEYFWSCCGE D SHPGC G H SYDDPPEGG+GAWRSPLTGTLR
Sbjct: 93 NSLMFWSRRSASCLVLLAAALVGVTPGSEGFLGAPQFAVAAGRSG--MTGTRGCCRTTGARQGGQVV-------------------VATKSGDGEATAATGGDVVRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 269
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A0G4H9F9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9F9_9ALVE) HSP 1 Score: 116 bits (291), Expect = 3.660e-27 Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 2
Query: 326 TCRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDDPPEGGEGAWRSPLTGTL 580
TCR CK+ F + N C +HPG +TGRLNRVNDVDTS LE+FWSCCGE DR HPGCT +HVSYDD EG S LTG +
Sbjct: 93 TCRQCKKPFLKSQNAETGCVFHPGFYTGRLNRVNDVDTSDLEFFWSCCGEYDRGHPGCTNTHHVSYDD-----EGPTWSVLTGKI 172
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A0G4GZ08_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZ08_VITBC) HSP 1 Score: 115 bits (288), Expect = 5.020e-25 Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 2
Query: 311 FSGTCTCRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDDPPEGGEGAWRSPLTG 574
S TCR CK+ F E N + AC YH G+F+GRLNRVNDVDTS LE+FWSCCGE DR HPGC H+S+D+ + WRSP+TG
Sbjct: 259 LSRPATCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVDTSDLEFFWSCCGEYDREHPGCVVTRHMSFDEADDAT--TWRSPMTG 344
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: W7TLU8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLU8_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.010e-21 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 2
Query: 317 GTCTCRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGL-EYFWSCCGEPDRSHPGCTTGYHVSYDDPPEGGEGAWRS 562
GT TCR C +QF +N AC++HPG++TGRL R++D D SG ++FWSCCG +R HPGCT +H S+DDPP G W+S
Sbjct: 81 GTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFDDPP----GPWQS 158
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A7S1TIL7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIL7_9RHOD) HSP 1 Score: 91.3 bits (225), Expect = 1.250e-18 Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query: 329 CRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDD 529
CR CK Q+ N +C H G ++GRLNRVNDVDTS LEYFW+CCGE + GC G+HVSYD+
Sbjct: 48 CRLCKGQYDPGQNTGRSCRRHSGYYSGRLNRVNDVDTSDLEYFWNCCGEESKHAHGCEWGHHVSYDE 114
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A1X6PJI3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJI3_PORUM) HSP 1 Score: 89.0 bits (219), Expect = 2.460e-17 Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 2
Query: 329 CRNCKQQFRREDNWAGACSYHPGLFTGRLNRVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDD 529
CR CKQQ+ E N G+C YH + GRLNR+ +TSGLEYFW CCG+ D + GC H SYDD
Sbjct: 89 CRQCKQQYDPEANEPGSCRYHGAQYRGRLNRIEPTETSGLEYFWHCCGDTDVNAEGCVKARHSSYDD 155
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A836DM93_9ROSI (WEB family protein n=4 Tax=Saliceae TaxID=238069 RepID=A0A836DM93_9ROSI) HSP 1 Score: 63.9 bits (154), Expect = 3.120e-9 Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 2
Query: 296 EGGEEFSGTCTCRNCKQQFRREDNWAGACSYHPGLFTGRLN-------RVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDD 529
E G+E C+ CKQ F N + AC +HP F R + + D F+ CCG D GCTT +HVSYDD
Sbjct: 5 ERGKEKEREKICKRCKQTFTSSSNTSSACRFHPSFFVCRRHDDQKRYYELGPEDPPYAAKFYDCCGAEDPEASGCTTSFHVSYDD 89
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: A0A251K7E1_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251K7E1_MANES) HSP 1 Score: 62.4 bits (150), Expect = 1.090e-8 Identity = 27/74 (36.49%), Postives = 35/74 (47.30%), Query Frame = 2
Query: 329 CRNCKQQFRREDNWAGACSYHPGLFTGRLN-------RVNDVDTSGLEYFWSCCGEPDRSHPGCTTGYHVSYDD 529
C+ CKQ F N + AC +HP F R + + D F+ CCG PGCTT +H+SYDD
Sbjct: 16 CKRCKQSFTSSSNTSSACRFHPSFFVCRRHDDQKRYYELGPDDPLYAAKFYDCCGAEHPEAPGCTTSFHISYDD 89
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Match: V4VE51_CITCL (Uncharacterized protein n=2 Tax=Citrus TaxID=2706 RepID=V4VE51_CITCL) HSP 1 Score: 62.4 bits (150), Expect = 1.090e-8 Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 2
Query: 329 CRNCKQQFRREDNWAGACSYHPGLFTGRLN----RVNDVDTSGLEY---FWSCCGEPDRSHPGCTTGYHVSYDD 529
C+ CKQ + N + +C +HP F R + R ++ Y F+ CCG D GCTTG+HVSYDD
Sbjct: 15 CKRCKQTYTASSNSSSSCRFHPSFFVCRRHDDQKRYYELGPDDPPYAAKFYDCCGAEDADASGCTTGFHVSYDD 88 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1119.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1119.966.1 >prot_P-lacustris_contig1119.966.1 ID=prot_P-lacustris_contig1119.966.1|Name=mRNA_P-lacustris_contig1119.966.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=189bp MLPRSCLLAAVLVGIVPSSESFLSVPRAAVAGGLSGSVRTGRRGCSGTRAback to top mRNA from alignment at P-lacustris_contig1119:19353..23559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1119.966.1 ID=mRNA_P-lacustris_contig1119.966.1|Name=mRNA_P-lacustris_contig1119.966.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4207bp|location=Sequence derived from alignment at P-lacustris_contig1119:19353..23559+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1119:19353..23559+ >mRNA_P-lacustris_contig1119.966.1 ID=mRNA_P-lacustris_contig1119.966.1|Name=mRNA_P-lacustris_contig1119.966.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1134bp|location=Sequence derived from alignment at P-lacustris_contig1119:19353..23559+ (Pleurocladia lacustris SAG_25_93)back to top |