mRNA_P-lacustris_contig1113.937.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1113.937.1
Unique NamemRNA_P-lacustris_contig1113.937.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1113.937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1113contigP-lacustris_contig1113:6459..7163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size228
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1113.937.1prot_P-lacustris_contig1113.937.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1113 6533..7163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.408106-UTR-P-lacustris_contig1113:6458..65321622815410.408106-UTR-P-lacustris_contig1113:6458..6532Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1113 6459..6532 -
1693493527.4987285-UTR-P-lacustris_contig1113:6458..65321693493527.4987285-UTR-P-lacustris_contig1113:6458..6532Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1113 6459..6532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.4190571-CDS-P-lacustris_contig1113:6532..66721622815410.4190571-CDS-P-lacustris_contig1113:6532..6672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6533..6672 -
1693493527.508034-CDS-P-lacustris_contig1113:6532..66721693493527.508034-CDS-P-lacustris_contig1113:6532..6672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6533..6672 -
1622815410.4294446-CDS-P-lacustris_contig1113:7075..71631622815410.4294446-CDS-P-lacustris_contig1113:7075..7163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 7076..7163 -
1693493527.517071-CDS-P-lacustris_contig1113:7075..71631693493527.517071-CDS-P-lacustris_contig1113:7075..7163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 7076..7163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1113.937.1

>prot_P-lacustris_contig1113.937.1 ID=prot_P-lacustris_contig1113.937.1|Name=mRNA_P-lacustris_contig1113.937.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=76bp
TLRHHARPKKKLRKVQSAQTEVRWGNLRADTNIAPADAQVKRRTARFFKG
ERQKAVYRLFLRHKAVHPEPPLNFS*
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mRNA from alignment at P-lacustris_contig1113:6459..7163-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1113.937.1 ID=mRNA_P-lacustris_contig1113.937.1|Name=mRNA_P-lacustris_contig1113.937.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=705bp|location=Sequence derived from alignment at P-lacustris_contig1113:6459..7163- (Pleurocladia lacustris SAG_25_93)
ACTCTACGCCACCATGCACGACCCAAGAAAAAGCTGCGAAAGGTGCAGTC
GGCTCAAACGGAAGTGCGATGGGGCAACCTCCGTGCAGGTATGGTGCGCG
CCTTAGGCGCCACCCCTTTCTTTGTCTTGGAAATTCGAAATTGATGTTTC
GTCTGTCCCCTACTTGTAGGCAATGCACCCAAAAACGGCTTGGTTTGACG
CTTGTTTTCTGGGCAGTCTCTCCGCTATGTGTGTGTGTTGTCATCCCATC
TAGCCTATATTCCCTTTGGTGCTTTATGTAGACGGGTGCATCAGCCGGGC
CCTACTGTACTTTCTGCTTCCCGTATGCATGTATGACCTACACGCATCAG
AGACTCGATCAAGCAGATCTTCCGCACGCACAACTACTGTAGCCGCCAAT
CAACTACATCGTCTAATTGCTTGCTGTAAAGTACATGATGCATGCTACGG
TAACAGTGCGCTGAACGCACCCACCGCGGTACCCATCGCAGATACAAATA
TAGCACCGGCGGATGCGCAAGTAAAGAGAAGAACGGCACGTTTTTTTAAG
GGCGAACGCCAGAAAGCGGTATACCGCCTTTTTCTACGCCACAAAGCGGT
ACACCCGGAACCACCCTTAAACTTCAGCTAGTTCGGGGCGCTGATTGGTC
CACACAGCCCTATACCGCATACTGGCACATATCCAGGCGGTATACCAGGT
CGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1113:6459..7163-

>mRNA_P-lacustris_contig1113.937.1 ID=mRNA_P-lacustris_contig1113.937.1|Name=mRNA_P-lacustris_contig1113.937.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=456bp|location=Sequence derived from alignment at P-lacustris_contig1113:6459..7163- (Pleurocladia lacustris SAG_25_93)
ACTCTACGCCACCATGCACGACCCAAGAAAAAGCTGCGAAAGGTGCAGTC
GGCTCAAACGGAAGTGCGATGGGGCAACCTCCGTGCAGACTCTACGCCAC
CATGCACGACCCAAGAAAAAGCTGCGAAAGGTGCAGTCGGCTCAAACGGA
AGTGCGATGGGGCAACCTCCGTGCAGATACAAATATAGCACCGGCGGATG
CGCAAGTAAAGAGAAGAACGGCACGTTTTTTTAAGGGCGAACGCCAGAAA
GCGGTATACCGCCTTTTTCTACGCCACAAAGCGGTACACCCGGAACCACC
CTTAAACTTCAGCTAGATACAAATATAGCACCGGCGGATGCGCAAGTAAA
GAGAAGAACGGCACGTTTTTTTAAGGGCGAACGCCAGAAAGCGGTATACC
GCCTTTTTCTACGCCACAAAGCGGTACACCCGGAACCACCCTTAAACTTC
AGCTAG
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