mRNA_P-lacustris_contig1113.936.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1113.936.1
Unique NamemRNA_P-lacustris_contig1113.936.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1113.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1113contigP-lacustris_contig1113:6032..6315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size189
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1113.936.1prot_P-lacustris_contig1113.936.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1113 6068..6315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.3477826-UTR-P-lacustris_contig1113:6031..60671622815410.3477826-UTR-P-lacustris_contig1113:6031..6067Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1113 6032..6067 +
1693493527.4718235-UTR-P-lacustris_contig1113:6031..60671693493527.4718235-UTR-P-lacustris_contig1113:6031..6067Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1113 6032..6067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.3607452-CDS-P-lacustris_contig1113:6067..61191622815410.3607452-CDS-P-lacustris_contig1113:6067..6119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6068..6119 +
1693493527.4808924-CDS-P-lacustris_contig1113:6067..61191693493527.4808924-CDS-P-lacustris_contig1113:6067..6119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6068..6119 +
1622815410.3739655-CDS-P-lacustris_contig1113:6214..63151622815410.3739655-CDS-P-lacustris_contig1113:6214..6315Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6215..6315 +
1693493527.4894662-CDS-P-lacustris_contig1113:6214..63151693493527.4894662-CDS-P-lacustris_contig1113:6214..6315Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 6215..6315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1113.936.1

>prot_P-lacustris_contig1113.936.1 ID=prot_P-lacustris_contig1113.936.1|Name=mRNA_P-lacustris_contig1113.936.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=51bp
MIGIVIVIGFVLLGREGDDAGTCLLSGHLLCGPLAVWSASCLVWGCVIAL
*
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mRNA from alignment at P-lacustris_contig1113:6032..6315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1113.936.1 ID=mRNA_P-lacustris_contig1113.936.1|Name=mRNA_P-lacustris_contig1113.936.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=284bp|location=Sequence derived from alignment at P-lacustris_contig1113:6032..6315+ (Pleurocladia lacustris SAG_25_93)
AGCTGAAGGGCTAGAGTCTAACACTACATCCATAAGATGATCGGCATCGT
CATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGGAGGTGCCCACAGCG
CGAGGGCTATCGTCATCGTCACCTATCCACAGGTCCGTGTCACTACCGGC
GCAGTCGTCACCTCCTCCGCACTCTTGAAGGAGATGATGCAGGGACATGT
CTGCTGTCTGGGCATCTGCTGTGTGGACCGCTGGCTGTGTGGTCTGCTTC
GTGCTTGGTGTGGGGCTGTGTGATTGCCCTCTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1113:6032..6315+

>mRNA_P-lacustris_contig1113.936.1 ID=mRNA_P-lacustris_contig1113.936.1|Name=mRNA_P-lacustris_contig1113.936.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=306bp|location=Sequence derived from alignment at P-lacustris_contig1113:6032..6315+ (Pleurocladia lacustris SAG_25_93)
ATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGG
AGATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAA
GGAGATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGACC
GCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCCC
TCTGAATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGAC
CGCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCC
CTCTGA
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