mRNA_P-lacustris_contig1112.932.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1112.932.1
Unique NamemRNA_P-lacustris_contig1112.932.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1112.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1112contigP-lacustris_contig1112:28318..29193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size876
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1112.932.1prot_P-lacustris_contig1112.932.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1112 28648..29160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.916455-UTR-P-lacustris_contig1112:28317..286471622815408.916455-UTR-P-lacustris_contig1112:28317..28647Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1112 28318..28647 +
1693493527.0048163-UTR-P-lacustris_contig1112:28317..286471693493527.0048163-UTR-P-lacustris_contig1112:28317..28647Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1112 28318..28647 +
1622815408.9713488-UTR-P-lacustris_contig1112:29160..291931622815408.9713488-UTR-P-lacustris_contig1112:29160..29193Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1112 29161..29193 +
1693493527.023772-UTR-P-lacustris_contig1112:29160..291931693493527.023772-UTR-P-lacustris_contig1112:29160..29193Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1112 29161..29193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.958003-CDS-P-lacustris_contig1112:28647..291601622815408.958003-CDS-P-lacustris_contig1112:28647..29160Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1112 28648..29160 +
1693493527.014667-CDS-P-lacustris_contig1112:28647..291601693493527.014667-CDS-P-lacustris_contig1112:28647..29160Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1112 28648..29160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1112.932.1

>prot_P-lacustris_contig1112.932.1 ID=prot_P-lacustris_contig1112.932.1|Name=mRNA_P-lacustris_contig1112.932.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=171bp
MVPLLNFRERTNKSLSLPLDDSEERNFLGRERERGAREPPTNTVMNIALT
PRAVFSKTWAATRVLYWLGYVDWSELACVSSRPPDSTPVCMRRLAFEECE
TAVVLQNPVMIVARMPGSNSSIRLHPAGHCYSAETMNYSVSVASLTSQAK
TAPCLYLSLSLSLSFGTDRF*
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mRNA from alignment at P-lacustris_contig1112:28318..29193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1112.932.1 ID=mRNA_P-lacustris_contig1112.932.1|Name=mRNA_P-lacustris_contig1112.932.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=876bp|location=Sequence derived from alignment at P-lacustris_contig1112:28318..29193+ (Pleurocladia lacustris SAG_25_93)
ACAAATTACGGCCGGACGGTCGAATCGCATGCAATCGTGTGTGTTCCTAC
GGCAGTACGTGGTGGGCCGGAGTGATTCTCTGTGGGTTTGGTGCGTGGTA
AGGAAGGGCATCACCTTCGACTCGTCCCAAACAGAAGCATATACATTTTC
GATTCAAATGTTTGAAAAAAGAGAGAGGGAGAGAGAGAGGCGTGAAACGG
GCTACAGAAATATCAAGACCAAGAATCGTCGTTTTCTTCAAAAGGAAACA
GACGGCAAAAACTCAAGCCGTCGGCGCGAGATCTTCTAGGAACAGGAGGG
ACGCTGGTTACGGGAGCCGCACAGCAATAGATGGTGCCGCTCCTCAATTT
TCGAGAGCGCACGAATAAATCTCTCTCTCTCCCTCTGGATGATTCCGAGG
AACGCAACTTCCTCGGTAGAGAGCGAGAGAGGGGAGCGAGAGAGCCACCT
ACAAACACGGTAATGAACATAGCACTAACGCCAAGAGCAGTGTTCAGCAA
GACGTGGGCAGCGACCCGCGTACTCTACTGGTTGGGGTACGTGGATTGGT
CCGAGCTTGCGTGCGTTTCATCTCGTCCTCCTGATTCAACTCCTGTATGT
ATGCGTCGGCTTGCGTTTGAGGAGTGTGAGACAGCAGTAGTGCTTCAGAA
TCCCGTGATGATTGTTGCACGGATGCCAGGGAGCAACAGCAGCATACGCT
TGCACCCGGCCGGCCATTGCTACTCGGCGGAAACCATGAACTATTCCGTT
TCTGTCGCTTCTCTCACCTCGCAGGCGAAAACGGCACCTTGTCTGTACTT
GTCTCTCTCCCTCTCTCTCTCTTTCGGCACCGACAGATTTTGAAAACTTG
AAAAACAAGAATTGAGCAAAACTGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1112:28318..29193+

>mRNA_P-lacustris_contig1112.932.1 ID=mRNA_P-lacustris_contig1112.932.1|Name=mRNA_P-lacustris_contig1112.932.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1026bp|location=Sequence derived from alignment at P-lacustris_contig1112:28318..29193+ (Pleurocladia lacustris SAG_25_93)
ATGGTGCCGCTCCTCAATTTTCGAGAGCGCACGAATAAATCTCTCTCTCT
CCCTCTGGATGATTCCGAGGAACGCAACTTCCTCGGTAGAGAGCGAGAGA
GGGGAGCGAGAGAGCCACCTACAAACACGGTAATGAACATAGCACTAACG
CCAAGAGCAGTGTTCAGCAAGACGTGGGCAGCGACCCGCGTACTCTACTG
GTTGGGGTACGTGGATTGGTCCGAGCTTGCGTGCGTTTCATCTCGTCCTC
CTGATTCAACTCCTGTATGTATGCGTCGGCTTGCGTTTGAGGAGTGTGAG
ACAGCAGTAGTGCTTCAGAATCCCGTGATGATTGTTGCACGGATGCCAGG
GAGCAACAGCAGCATACGCTTGCACCCGGCCGGCCATTGCTACTCGGCGG
AAACCATGAACTATTCCGTTTCTGTCGCTTCTCTCACCTCGCAGGCGAAA
ACGGCACCTTGTCTGTACTTGTCTCTCTCCCTCTCTCTCTCTTTCGGCAC
CGACAGATTTTGAATGGTGCCGCTCCTCAATTTTCGAGAGCGCACGAATA
AATCTCTCTCTCTCCCTCTGGATGATTCCGAGGAACGCAACTTCCTCGGT
AGAGAGCGAGAGAGGGGAGCGAGAGAGCCACCTACAAACACGGTAATGAA
CATAGCACTAACGCCAAGAGCAGTGTTCAGCAAGACGTGGGCAGCGACCC
GCGTACTCTACTGGTTGGGGTACGTGGATTGGTCCGAGCTTGCGTGCGTT
TCATCTCGTCCTCCTGATTCAACTCCTGTATGTATGCGTCGGCTTGCGTT
TGAGGAGTGTGAGACAGCAGTAGTGCTTCAGAATCCCGTGATGATTGTTG
CACGGATGCCAGGGAGCAACAGCAGCATACGCTTGCACCCGGCCGGCCAT
TGCTACTCGGCGGAAACCATGAACTATTCCGTTTCTGTCGCTTCTCTCAC
CTCGCAGGCGAAAACGGCACCTTGTCTGTACTTGTCTCTCTCCCTCTCTC
TCTCTTTCGGCACCGACAGATTTTGA
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