mRNA_P-lacustris_contig111.907.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig111.907.1
Unique NamemRNA_P-lacustris_contig111.907.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.420e-72
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 3
Query:    3 EDDSVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLAK 350
            EDD+VTWDEEMI+GCVCDS W+VGLGAGQTQEPEWFGPDCSLRHCPSGDDP+TDVDETDC  V SSSVY GT GR+GNLC VDCSNRGTCDY TGLCEC+TGYYG NCG QSVLAK
Sbjct:  154 EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 269          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A7S2H126_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H126_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.670e-52
Identity = 75/120 (62.50%), Postives = 94/120 (78.33%), Query Frame = 3
Query:    3 EDDSVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSV---YSGTVGR--SGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLA 347
            ++ + TWDE+M+YGC+CDS+W+VGLGAGQ ++ EWFG DCS+RHCPSGDDP T VDETDC+ V +++    Y G  G   +GNLC VDCSNRG CDY +GLC C+TG+YG NCG  SVLA
Sbjct:   84 DETTTTWDEDMLYGCLCDSSWEVGLGAGQRRDAEWFGYDCSMRHCPSGDDPVTSVDETDCNDVGTNATRPNYYGEFGNGTTGNLCHVDCSNRGLCDYASGLCHCFTGHYGENCGSMSVLA 203          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A7S2S8K4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8K4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.900e-50
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 3
Query:   33 MIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLAK 350
            M+YGCVCDS+W VGLGAG  QEPEWFG DCSLRHCPSGDDP T +DETDC G  +   +    G +GN C VDCSNRG CDY TG C+C+ G+YG  C LQSVLA+
Sbjct:    1 MVYGCVCDSSWSVGLGAGNRQEPEWFGADCSLRHCPSGDDPRTSLDETDCGGKMAKGGFG--TGETGNFCHVDCSNRGICDYNTGRCQCFDGHYGEACNLQSVLAQ 104          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A7S4TA77_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA77_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.070e-49
Identity = 74/114 (64.91%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   12 SVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNT-DVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLAK 350
            ++TWD EMIYGCVCDS+W VGLG G+ QEPEWFG DCSLRHCPS DDP T  VDETDCS   +        G+ GN+C +DCSNRG CDY TG C C+ GYYG  C LQS LAK
Sbjct:    7 TITWDSEMIYGCVCDSSWAVGLGNGERQEPEWFGADCSLRHCPSADDPRTTSVDETDCSNKDAKGGRG--TGQPGNICHIDCSNRGLCDYVTGRCTCFDGYYGEACHLQSALAK 118          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A8J2X5G2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.190e-49
Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 3
Query:   21 WDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDP-NTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLAK 350
            WD++ IYGCVCDS+W VGLG GQ QEPEWFGP CSLRHCPSGDDP  T VDET+C+GV ++  Y   VG  GNLCQVDC+NRG CD ETG C C+TG YGH+C L S LA+
Sbjct:  153 WDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG--VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALAR 261          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.020e-44
Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 3
Query:   18 TWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSG-VASSSVYSG-TVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVLA 347
            TWDE+ I+GCVCDS+W V L +G TQEPEWFG DCSLRHC SGDDP T  DETDC G V +    +G T G +GNLC VDC+NRG C+Y TG+C+C+ G+YG  C LQS LA
Sbjct:  167 TWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTTADETDCVGKVRNGQTVAGRTGGVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELA 278          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A2D4CFV3_PYTIN (EGF-like domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFV3_PYTIN)

HSP 1 Score: 154 bits (390), Expect = 1.880e-44
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 3
Query:   18 TWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVL 344
            TWD++ ++GCVCDS W VGLG GQ Q  EWFGPDCSL  CPSGDDP T VDETDCSG  +S      VG++GN C VDCSNRG CDY TGLC+C+ G+YG NC   S +
Sbjct:  173 TWDQDRMFGCVCDSTWAVGLGTGQRQLAEWFGPDCSLMRCPSGDDPLTAVDETDCSGKQASGGIG--VGQTGNKCHVDCSNRGKCDYSTGLCQCFDGFYGANCASLSPV 279          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A836CHV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.100e-43
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 3
Query:   12 SVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCG 329
            +  WD + ++ C+CDS+W VG+GAG+TQ  EWFGP C+ R CPSGDDP T  DETDC+G  +  V +   G +GNLC VDCSNRGTC+Y TG+C+CY G+ GHNCG
Sbjct:  156 AAAWDADKLWACLCDSSWPVGIGAGETQASEWFGPACTQRRCPSGDDPMTSADETDCTGKTTPYVAATATGEAGNLCHVDCSNRGTCNYGTGVCKCYPGFSGHNCG 261          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A067CMU3_SAPPC (EGF-like domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CMU3_SAPPC)

HSP 1 Score: 152 bits (383), Expect = 1.400e-43
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 3
Query:   12 SVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSV 341
            + TWD+E I+GCVCDSAW VGL +GQTQEPEWFG DCSLRHCPS +DP + V +TDC+GVA++   S +VG  GNLC ++CSNRG C+Y+ G C C+ G+ G +C +Q V
Sbjct:  156 TTTWDQERIFGCVCDSAWPVGLASGQTQEPEWFGADCSLRHCPSNNDPLSGVTDTDCAGVAAAG--SASVGALGNLCHIECSNRGICNYKDGSCACFEGFLGVDCSVQVV 263          
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Match: A0A8K1CPX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL)

HSP 1 Score: 151 bits (381), Expect = 1.500e-43
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 3
Query:    6 DDSVTWDEEMIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDCSGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGLQSVL 344
            +D+ TWD+  I+GC+CDS+W VGLG+GQ Q+ EWFGPDCSL  CP+GDDP T VDETDC+G  ++   S  VG+ GN C VDC+NRG CDY +G C C++G+YG NC   S +
Sbjct:  129 EDTTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTAVDETDCNGKTATDSTS--VGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNCASLSPV 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig111.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV5_ECTSI1.420e-7286.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2H126_9STRA9.670e-5262.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2S8K4_9STRA6.900e-5066.04Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4TA77_9STRA1.070e-4964.91Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J2X5G2_9STRA1.190e-4968.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CQ07_9STRA1.020e-4463.39Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4CFV3_PYTIN1.880e-4463.30EGF-like domain-containing protein n=2 Tax=Pythium... [more]
A0A836CHV5_9STRA1.100e-4358.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CMU3_SAPPC1.400e-4360.00EGF-like domain-containing protein n=1 Tax=Saprole... [more]
A0A8K1CPX8_PYTOL1.500e-4357.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig111contigP-lacustris_contig111:99536..100059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog2880.D7FYV5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EGF-like domain
EggNOG OGs2A4YC@1,2RY8D@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size353
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig111.907.1prot_P-lacustris_contig111.907.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig111 99568..100059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815400.5559943-UTR-P-lacustris_contig111:99535..995671622815400.5559943-UTR-P-lacustris_contig111:99535..99567Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 99536..99567 +
1693493523.4092607-UTR-P-lacustris_contig111:99535..995671693493523.4092607-UTR-P-lacustris_contig111:99535..99567Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 99536..99567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815400.5684762-CDS-P-lacustris_contig111:99567..997561622815400.5684762-CDS-P-lacustris_contig111:99567..99756Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 99568..99756 +
1693493523.4190774-CDS-P-lacustris_contig111:99567..997561693493523.4190774-CDS-P-lacustris_contig111:99567..99756Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 99568..99756 +
1622815400.5778646-CDS-P-lacustris_contig111:99927..1000591622815400.5778646-CDS-P-lacustris_contig111:99927..100059Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 99928..100059 +
1693493523.4271245-CDS-P-lacustris_contig111:99927..1000591693493523.4271245-CDS-P-lacustris_contig111:99927..100059Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 99928..100059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig111.907.1

>prot_P-lacustris_contig111.907.1 ID=prot_P-lacustris_contig111.907.1|Name=mRNA_P-lacustris_contig111.907.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=107bp
MIYGCVCDSAWDVGLGAGQTQEPEWFGPDCSLRHCPSGDDPNTDVDETDC
SGVASSSVYSGTVGRSGNLCQVDCSNRGTCDYETGLCECYTGYYGHNCGL
QSVLAK*
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mRNA from alignment at P-lacustris_contig111:99536..100059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig111.907.1 ID=mRNA_P-lacustris_contig111.907.1|Name=mRNA_P-lacustris_contig111.907.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=524bp|location=Sequence derived from alignment at P-lacustris_contig111:99536..100059+ (Pleurocladia lacustris SAG_25_93)
GAGAAGACGACTCGGTGACATGGGACGAAGAGATGATCTATGGGTGCGTG TGCGATTCAGCATGGGACGTCGGGCTTGGTGCGGGGCAGACGCAGGAGCC AGAGTGGTTTGGGCCCGACTGCTCTTTGAGGCACTGTCCTAGCGGCGACG ACCCCAACACGGATGTGGATGAGACCGATTGTTCCGGCGTCGCGTCGTCT TCCGTCTACAGCGGCACCGTGGTGAGTCAACTCACGTCTGATTGTCCCCC CGGTTTGATCTTGATCGATCCATTTCGCCGGGGAAGCCACGGTAAGCATT TAATGTATGAAAGACTCATGTTGAGATTTCCCTCGATGCCGTGAAGTAGT GAGACAACCTGTGGCGTACACGTGTTGCTTGTGGAACAACAGGGCCGTTC GGGCAACCTTTGTCAGGTGGACTGCTCCAATCGAGGAACGTGCGACTACG AAACGGGCCTATGTGAATGCTACACGGGATACTACGGCCACAACTGTGGG CTTCAATCCGTCCTCGCAAAGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig111:99536..100059+

>mRNA_P-lacustris_contig111.907.1 ID=mRNA_P-lacustris_contig111.907.1|Name=mRNA_P-lacustris_contig111.907.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=642bp|location=Sequence derived from alignment at P-lacustris_contig111:99536..100059+ (Pleurocladia lacustris SAG_25_93)
ATGATCTATGGGTGCGTGTGCGATTCAGCATGGGACGTCGGGCTTGGTGC
GGGGCAGACGCAGGAGCCAGAGTGGTTTGGGCCCGACTGCTCTTTGAGGC
ACTGTCCTAGCGGCGACGACCCCAACACGGATGTGGATGAGACCGATTGT
TCCGGCGTCGCGTCGTCTTCCGTCTACAGCGGCACCGTGATGATCTATGG
GTGCGTGTGCGATTCAGCATGGGACGTCGGGCTTGGTGCGGGGCAGACGC
AGGAGCCAGAGTGGTTTGGGCCCGACTGCTCTTTGAGGCACTGTCCTAGC
GGCGACGACCCCAACACGGATGTGGATGAGACCGATTGTTCCGGCGTCGC
GTCGTCTTCCGTCTACAGCGGCACCGTGGGCCGTTCGGGCAACCTTTGTC
AGGTGGACTGCTCCAATCGAGGAACGTGCGACTACGAAACGGGCCTATGT
GAATGCTACACGGGATACTACGGCCACAACTGTGGGCTTCAATCCGTCCT
CGCAAAGTAGGGCCGTTCGGGCAACCTTTGTCAGGTGGACTGCTCCAATC
GAGGAACGTGCGACTACGAAACGGGCCTATGTGAATGCTACACGGGATAC
TACGGCCACAACTGTGGGCTTCAATCCGTCCTCGCAAAGTAG
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