mRNA_P-lacustris_contig111.905.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig111.905.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI) HSP 1 Score: 669 bits (1727), Expect = 1.400e-207 Identity = 432/783 (55.17%), Postives = 523/783 (66.79%), Query Frame = 1
Query: 886 ANYAKQLREQQVTDEAAAQRSKQNERYPALTAASTIPANQDHFFPQTQPAVTGRTEDAIPSAIDRKMEYARLLREQMAADEAARHAMETERKRGATAASSAVVPTIRGQEQGPRGHHNERMDVSVRSAKAQYAQQLREQMADKQNAQRASKGVMENSPSANDGPSWIEGATEGRAARRRRSNTEYAEQLRAQIAAQKNINHDHESRIAARMEPTED-YKQAGHEKMFQQQHRQWPGKVDLIDDQRQGPEWHRSRSDIHDGRPNGEAERTQRRGRVDERLFLSQGEANNFLALERQKQLDHQKEYAEALRRDMAAPKVDSLGRPLEDIINPSRTKLGNIES---NNNDFNEPFDRDGGNTVPGESRHLHPGSRRQAGGDMSGRRRQQQQSHESEYLRE-GPPYGAWPPSQAQGGGGYD------ERKAAVPETHYDAYGGNTDGYHQAGGVYNELIHPTEKWRYSK--LNEIAASRLPPPEGGYMGNGERRRESWDTRGSFAE-GVGYTGSFSKVPSHGD-NWSMQGPSEGRVVDRVWRAGNSSTHRG--QPHRGQEEYRYSGPGGPPRRASEVG--VEVVSTKASTMHNPVDPEELARIQAKKDSYRRDLEAQMAEHKKLQDQRRRGAPGSKEAEVFHLQEAMEERNERNKMAPGYEVGPLGVAVVKDHYSATGRGKRSPPKVPAAARATDISRRPXXXXXXXXXXXXAGELTRSANSGTFG-GQDGASLSLLPSSEGDTCVHDAEGAGAPPRRGSGLRDLLGVETTVEKDREKSRVQAEALK 3174
++YA+ +REQ + AAAQR + R P AA TIPA++ P QP T + S IDRK EYA LREQMA+DEA R AME ERK + SSA P I E+G RG +E ++ SVR AKA+YAQQLREQMA K+NAQRA+KG MENS SAN GPSWIEGATEGR ARRRRSNTEYAEQLRAQIAAQK+IN +S +AAR++P +D ++Q G+EK +QQ H++ G V D Q PE RS+ D H R+Q R R +E++ LS+GE +N LA RQ++++HQ+EYAEALRRDMAAPKVDSLGRP+ DI +PSRT+L N S N N+ E F ++ GN+ P E+ HL PG R QAG + R QQ E EYLRE PYGAWP SQAQ G Y+ R+ VP THY+AYG N GY + G Y+EL +PT + +K + I+AS LPPP ++ +GERR E W T G + E G GY G+ +++P G +W + PS G DR + H G + HR Q++ RY GP GPP A G V V STKASTMHNPVDPEELARIQAKK+SYRRDLEAQMAEH KLQDQR++G PGSKEAEVFHLQ+AMEER+ERNKMAPGYE+GPLGV V+KD+YS TGRG+RSP K+ A A A ++ GE T +S FG G DG S SLL S G V DAEG GAP RRGSGLR+LLG+ET E+DREKSRVQAEALK
Sbjct: 9 SDYARHVREQMMAGVAAAQRGNDDARRPGPVAA-TIPADRGRTLPHAQPVETEDGTTTVSSTIDRKAEYASQLREQMASDEATRKAMEIERKCKVSTVSSAAGPAIGEHEEGLRGGEDEWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGRKARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDMFEQGGYEKYYQQLHQRLLGGVSSFDYQSGEPERRRSQIDDH---------RSQGRPRTEEKISLSRGEVSNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNYGNSAPREAGHLQPGPRPQAGEHV---RDWSQQPFEREYLREHATPYGAWPSSQAQSQGPYEVGEHRHSRQPPVPGTHYEAYGSNPKGY-PSRGDYDELEYPTGRRGNAKWVADGISASGLPPPRRDFVDDGERRGERWGTSGPYPERGGGYPGNRTRLPEFGGKSWDITNPSVGGGHDR-------NVHPGPIRDHREQQDRRYFGPRGPPGGAPAAGGGVGVRSTKASTMHNPVDPEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGVPGSKEAEVFHLQKAMEERSERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATGNQGLSASSAIDPSSGPVGESTPQTSSELFGSGHDGTSSSLLAPSGGGADVSDAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALK 770
BLAST of mRNA_P-lacustris_contig111.905.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE) HSP 1 Score: 615 bits (1586), Expect = 7.150e-187 Identity = 417/788 (52.92%), Postives = 502/788 (63.71%), Query Frame = 1
Query: 886 ANYAKQLREQQVTDEAAAQRSKQNERYPALTAASTIPANQDHFFPQTQPAVTGRTEDAIPSAIDRKMEYARLLREQMAADEAARHAMETERKRGATAASSAVVPTIRGQEQGPRGHHNERMDVSVRSAKAQYAQQLREQMADKQNAQRASKGVMENSPSANDGPSWIEGATEGRAARRRRSNTEYAEQLRAQIAAQKNINHDHESRIAARMEPTEDY-KQAGHEKMFQQQHRQWPGKVDLIDDQRQGPEWHRSRSDIHDGRPNGEAERTQRRGRVDERLFLSQGEANNFLALERQKQLDHQKEYAEALRRDMAAPKVDSLGRPLEDIINPSRTKLGNIES---NNNDFNEPFDRDGGNTVPGESRHLHPGSRRQAGGDMSGRRRQQQQSHESEYLRE-GPPYGAWPPSQAQGGGGYD------ERKAAVPETHYDAYGGNTDGYHQAGGVYNELIHPTEKWRYSK--LNEIAASRLPPPEGGYMGNGERRRESWDTRGSF-AEGVGYTGSFSKVPSHG------DNWSMQGPSEGRVVDRVWRAGNSSTHRG--QPHRGQEEYRYSGPGGPPRRASEVG--VEVVSTKASTMHNPVDPEELARIQAKKDSYRRDLEAQMAEHKKLQDQRRRGAPGSKEAEVFHLQEAMEERNERNKMAPGYEVGPLGVAVVKDHYSATGRGKRSPPKVPAAARATDISRRPXXXXXXXXXXXXAGELTRSANSGTFG-GQDGASLSLLPSSEGDTCVHDAEGAGAPPRRGSGLRDLLGVETTVEKDREKSRVQAEALK 3174
+N+A+ +REQ + D AAAQR + R A T PA++ P QP T + A+ SAIDRK EYA LREQMA+DEA + AMETERK + S A P I G E+G RG NER++ SVR AKA+YA QLREQMA K+NAQRA+KG MENS SAN GPSWIEGATEGR A RRRSNTEYAEQLRAQIAAQK+IN +S +AAR++P +D +Q G+EK +QQ+H+Q G V+ D Q PE HRS+ D R+Q R R +E++ LS+GE NN LA RQ++++HQ+EYAEALRRDMAAPKVDSLGRP+ DI +PSRT+L N S N N+ E F ++ G P E+ HL G R QAG G QQ E E LRE PYGAWP +AQ G Y+ R+ VP T+YDAYG N GY GG Y+EL +PT + + I+ S LPPP + +GERR E W T S+ A G GY S +P G ++W PS V N H + HR Q+++ Y GP PP A VG V V STKAS MHNPVDP ELA+IQAKK+SYRRDLEAQMAE KLQ+QR++G SKEAEVF+LQ+AMEERNERNKMAPGYE+GPLGV V+KD+YS TGRG+RSP K+ A A A ++R GE NS FG G DG S SLLP SEG G GAP RRGSGLR+LLG+ET E+DREKSRVQAEALK
Sbjct: 9 SNHARHVREQMMADVAAAQRGNDDARLRGPVVAIT-PAHRGRTLPHAQPVETEDSTTAVSSAIDRKAEYASQLREQMASDEATKKAMETERKSNVSIVSFAAGPAIGGHEEGLRGGENERVNESVRQAKAEYAHQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREACRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDIIEQGGNEKHYQQEHQQLLGGVNSFDYQSGEPERHRSQIDDR---------RSQGRPRTEEKISLSRGEFNNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNDG--APREASHLQLGPRPQAGEHARG---WSQQPFERECLREHATPYGAWPSFRAQSQGRYEVGEHQHSRQPPVPGTNYDAYGSNPKGYPSRGG-YDELEYPTGRRGNATWVAEGISTSGLPPPRREFADDGERRGERWGTSESYPATGSGYPIHRSILPEFGGKNARQESWETTHPS-------VRHGYNRDVHLVPIRDHREQQDHWYFGPRDPPSGAPAVGGGVGVRSTKASKMHNPVDPVELAKIQAKKESYRRDLEAQMAERTKLQNQRKQGMHRSKEAEVFYLQQAMEERNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATVNRGLAASSAIGLSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGA------GVGAPSRRGSGLRELLGIETRAERDREKSRVQAEALK 767 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig111.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig111.905.1 >prot_P-lacustris_contig111.905.1 ID=prot_P-lacustris_contig111.905.1|Name=mRNA_P-lacustris_contig111.905.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1027bp MSGSNSGEPRVRFQVNQDQGAPVTSGHSPVLDAAAILGEEKNILAQPQSVback to top mRNA from alignment at P-lacustris_contig111:82945..96381+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig111.905.1 ID=mRNA_P-lacustris_contig111.905.1|Name=mRNA_P-lacustris_contig111.905.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13437bp|location=Sequence derived from alignment at P-lacustris_contig111:82945..96381+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig111:82945..96381+ >mRNA_P-lacustris_contig111.905.1 ID=mRNA_P-lacustris_contig111.905.1|Name=mRNA_P-lacustris_contig111.905.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=6162bp|location=Sequence derived from alignment at P-lacustris_contig111:82945..96381+ (Pleurocladia lacustris SAG_25_93)back to top |