mRNA_P-lacustris_contig1107.891.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1107.891.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE) HSP 1 Score: 503 bits (1295), Expect = 2.080e-162 Identity = 408/695 (58.71%), Postives = 450/695 (64.75%), Query Frame = 1
Query: 136 MEEALSRKEMLAAWRAAKGKPAQANKTATTGGGEPAA---------GRKGKGGVAEGVLQARPDAGNRVHKRTAPSQRKPFQVDTKRIQEASERRVQPGTPLHSLKKRLKHTAAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGYVSAVSRSLDAARTKEVSDYLKTQISEANMLLEISGVDAARTLLADLLSCTGAARGVGELALYWAARSKLEEASGLHDTGMYVEARQLLDQGEAYLSMPTQQKVMTKVMTSFEGRMNERASVEVDRLLEDSVDGLSLNDSASNSNSPASSAPFRYDPNDQSTEDDPGSGRSATKILNFSKIARESSAGSGRGGNA-----SPPSSNSSSGSRTSITTRCGISPDWMKDPAEE-------SHPSSSGAASGDSSXXXXXXXXXXXXXXXXXXASMSGVIYSDDES---VSDIDEGVIARAEAFHAEEEARNARIEAEEAGRVAGNG-----DDGDGCDTVDVVTTSTDVVHDVAEAAYLDP--ARHAKDDYKISGSXXXXXXXXXXPXRRSSTIEGGPSISASTHTTMXXXXXXXXTMAVDGATETVPSGKRKGTPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERNQD---QELSPASFIAQVEAKGKDGKRILTPVRRSRRISGVSREPTPALLRKEMEAML 2118
MEE LSRKE LAAWRAAKGKP +A+K A GR GK VA+GVLQARP AGN V+KRTAP QRKPFQVDT+ IQ+ASERRVQPGTP+HSLKKRLK TA AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARVPG+++ VSRSLD+ARTKEVSDYLK+QISEANMLLEI+GVDAARTLL DLL G RGVGELALYWAAR+KLEE D GMY+EAR+LLD GEAY+SMPTQQKVM KV+ +FEGRMN RA ++DRLLEDSVDGLSLN+SA+NSNSPASSAPFRYDPND STEDD GS +SA K LNFSKIA+ES GRGG + SS S SGS TS+TTR G SPDWM+ EE S +SSGA G ++ S SGVIYSDD+S VSDIDEGVIARA AF AEE+AR AR+EAEEAGRV G DDG G D DVV +V E A LD AR A +G+ + S XXXXXXXX GTPH R +D +ELSP SFI QVE GKDGKR LTPVRRSRRISGV++EPTPALLRKEMEAML
Sbjct: 1 MEEVLSRKEKLAAWRAAKGKPLEAHKAAXXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNMVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------ARVPGHMNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLYSAGGGRGVGELALYWAARAKLEE-----DAGMYLEARKLLDDGEAYISMPTQQKVMAKVVAAFEGRMNARAEADIDRLLEDSVDGLSLNNSAANSNSPASSAPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESG---GRGGASVDRASRAGSSTSGSGSNTSLTTRSGASPDWMRGANEEVEEDEKDSQAASSGAKGGATASGEGIE-------------SFSGVIYSDDDSDLSVSDIDEGVIARANAFAAEEDARKARMEAEEAGRVPGGVARDVVDDGAGAK--DGSLREEDVVAEVPEGADLDAGAAREA-----TAGNDERAKKSGANGDSNDRGVSSTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPHPKPLVKRTTP--------------------RRGKDVDGEELSPGSFITQVEGTGKDGKRTLTPVRRSRRISGVAKEPTPALLRKEMEAML 637
BLAST of mRNA_P-lacustris_contig1107.891.1 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 2.730e-133 Identity = 296/406 (72.91%), Postives = 321/406 (79.06%), Query Frame = 1
Query: 136 MEEALSRKEMLAAWRAAKGKPAQANKTATTGGGEPAA---------GRKGKGGVAEGVLQARPDAGNRVHKRTAPSQRKPFQVDTKRIQEASERRVQPGTPLHSLKKRLKHTAAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGYVSAVSRSLDAARTKEVSDYLKTQISEANMLLEISGVDAARTLLADLLSCTGAARGVGELALYWAARSKLEEASGLHDTGMYVEARQLLDQGEAYLSMPTQQKVMTKVMTSFEGRMNERASVEVDRLLEDSVDGLSLNDSASNSNSPASSAPFRYDPNDQSTEDDPGSGRSATKILNFSKIARESSAGSGRGGNASPPSSNSSSGSRTSITTRCGISPDWMKDPAEESHPSSSGAAS 1326
MEE LSRKE LAAWRAAKGKP +A+K A GR GK VA+GVLQARP AGNRV+KRTAP QRKPFQVDT+ IQ+ASERRVQPGTP+HSLKKRLK TA A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARVPG+V+ VSRSLD+ARTKEVSDYLK+QISEANMLLEI+GVDAARTLL DLLSC GA RGVGELALYWAAR+KLEE D GMY+EAR+LLD GEAY+SMPTQQKVM KVM +FEGRMN RA ++DRLLEDSVDGLSLNDSA+NSNSPASS PFRYDPND STEDD GS +SA K LNFSKIA+ES GRGG SS S SGS TS+TTR G SPDWM+D EE S A+S
Sbjct: 1 MEEVLSRKEKLAAWRAAKGKPLEAHKPAAXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNRVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------ARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCAGAGRGVGELALYWAARAKLEE-----DAGMYLEARKLLDDGEAYISMPTQQKVMAKVMAAFEGRMNARAEADIDRLLEDSVDGLSLNDSAANSNSPASSTPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESG---GRGG---ASSSTSGSGSNTSLTTRSGASPDWMRDANEEQEGDSQAASS 386 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1107.891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1107.891.1 >prot_P-lacustris_contig1107.891.1 ID=prot_P-lacustris_contig1107.891.1|Name=mRNA_P-lacustris_contig1107.891.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=662bp MEEALSRKEMLAAWRAAKGKPAQANKTATTGGGEPAAGRKGKGGVAEGVLback to top mRNA from alignment at P-lacustris_contig1107:44785..64645- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1107.891.1 ID=mRNA_P-lacustris_contig1107.891.1|Name=mRNA_P-lacustris_contig1107.891.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=19861bp|location=Sequence derived from alignment at P-lacustris_contig1107:44785..64645- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1107:44785..64645- >mRNA_P-lacustris_contig1107.891.1 ID=mRNA_P-lacustris_contig1107.891.1|Name=mRNA_P-lacustris_contig1107.891.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3972bp|location=Sequence derived from alignment at P-lacustris_contig1107:44785..64645- (Pleurocladia lacustris SAG_25_93)back to top |