mRNA_P-lacustris_contig1107.888.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1107.888.1
Unique NamemRNA_P-lacustris_contig1107.888.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A835WDY3_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WDY3_CHLIN)

HSP 1 Score: 57.4 bits (137), Expect = 1.410e-6
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVAR 333
            L+D   WY++D    P    L  TV+  SP  +   E LK +GA  ++MP+W + ELL CR  +Y  V  ++  E     GGVAR
Sbjct:  170 LNDPATWYIADG-LPPLLNVLARTVLLTSPKREAFKEMLK-EGARLLYMPLWELDELLACRRLLYSTVAESLTTELFEYYGGVAR 252          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: D8UKX4_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKX4_VOLCA)

HSP 1 Score: 55.8 bits (133), Expect = 5.240e-6
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1
Query:  148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLV---TKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
            TV+  SP H+     +K +GA  ++MP+W + ELLDCR  +Y  VP   V+      GG+AR V Q       ++ +E L    T +D   + +   A I    R  +A   L HI +D  D FK
Sbjct:  151 TVLLTSPVHETMKVIVK-EGADVLYMPLWELEELLDCRSKMYDMVPEVTVKGLFGYYGGMARYVLQHPSLDPDREVLELLRPLRTAIDTCNVKQVRMA-IGAVERVPEASHRLVHIVAD--DEFK 271          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A8J4CSY9_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CSY9_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 5.460e-6
Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   58 DFVSKGYLDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLVT 393
            DF  K  L +   W++ D      RG    TV+  SP+  R  EFLK+ GA  ++MP+W   E+  CR  ++P +  A+VE      G + R V +    + A+  ++  +T
Sbjct:  270 DFTEK--LMNSATWWIIDMGTALERG--ANTVLLASPDKARYKEFLKLQGANPLYMPIWTNDEIEKCRSRLFPTLDAAMVEALKSKWGNIPRYVLERALNEWAQGSLDMAIT 377          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A2K3DTZ5_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DTZ5_CHLRE)

HSP 1 Score: 54.3 bits (129), Expect = 1.840e-5
Identity = 50/151 (33.11%), Postives = 70/151 (46.36%), Query Frame = 1
Query:   79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAK---KRIETL---VTKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
            L ++  WY++D    P    L  TV+   P+ +   E LK   A  ++MP W + ELL CR  +Y  V   + +E  +  GGVAR V Q  K   +K   K +E L   V   D   L   +  +IS    G D    L HI +D  +NFK
Sbjct:  194 LMNRATWYITDG-VPPMLNCLARTVLLTPPDRKIYKEMLK-QSASLLYMPCWELGELLACRRLLYGTVDETLAKELYQHYGGVARFVLQLPKANPSKGLDKLLEELHEAVASCDTDQL-RMSVGSIS---TGPDVSHMLLHIVAD--ENFK 336          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: M4BV81_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV81_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.260e-5
Identity = 27/93 (29.03%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLVTKLDARMLIEAT 426
            T++  SP       + + + A  +FMPVW   E+  CR  +YPH PVA+V+E  R  GG+AR V +  +    +  +   + ++  + +++A+
Sbjct:  174 TILVTSPRRDVWYHYSERNCAT-LFMPVWTKEEIFRCRELMYPHTPVAIVDECYRRWGGIARYVLRHAEDPQQQGLLGEAIARIQLKAILDAS 265          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A150GCZ0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCZ0_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 2.480e-5
Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 1
Query:   37 VMKANLYDFVSKGYLDDKTAWYLSD--PEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYP-----HVPVAVVEERCRIVGGVARAV 339
            V + N   F  +  L D  AWY+S+  P     R  +   ++  SP+  RT E LK  GA  +FMP+W++ ELL+CR  VY       + V + E      GGVAR V
Sbjct:  185 VRRGNRQSFADQ--LQDPKAWYISEGIPPTLLSRAHI---LLIASPSRSRTQEMLK-SGAYELFMPLWSLKELLECRAKVYDGSVGEDLAVCLYEH----YGGVARYV 282          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A2J8AJ12_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AJ12_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 2.500e-5
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   85 DKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQ 345
            D  AWY++D    P    L   V+  SP H+   E  K  G + ++MP+W + ELL+CR  +Y  V   + ++  +  GG AR V +
Sbjct:  187 DPAAWYIADG-VPPQLNCLARIVLLTSPKHETYKEVRKASGKM-LYMPLWELDELLECRRLLYDTVSEGLAKDLYQYYGGAARFVLE 271          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: D8UKX3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKX3_VOLCA)

HSP 1 Score: 53.1 bits (126), Expect = 2.830e-5
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query:  148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETL 387
            TV+  SP H+     +K +GA  ++MP+W + ELLDCR  +Y  VP   V+      GG+AR V Q       ++ +E L
Sbjct:  117 TVLLTSPVHETMKVIVK-EGADVLYMPLWELEELLDCRSKMYDMVPEVTVKGLFGYYGGMARYVLQHPSLDPDREVLELL 195          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A8J4CT77_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CT77_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.970e-5
Identity = 32/96 (33.33%), Postives = 48/96 (50.00%), Query Frame = 1
Query:   58 DFVSKGYLDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQ 345
            DF  K  L +   W++ D      RG    TV+  SP+  R  EFLK+ GA  ++MP+W   E+  CR  ++P +  A+VE      G + R V +
Sbjct:  270 DFTEK--LMNSATWWIIDMGTALERG--ANTVLLASPDKARYKEFLKLQGANPLYMPIWTNDEIEKCRSRLFPTLDAAMVEALKSKWGNIPRYVLE 361          
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A8J9V5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J9V5_CHLRE)

HSP 1 Score: 53.5 bits (127), Expect = 3.170e-5
Identity = 46/151 (30.46%), Postives = 67/151 (44.37%), Query Frame = 1
Query:   79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETL------VTKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
            L ++  WY++D         L  TV+   P  Q   E +K  GA +++MP W + ELL CR  +Y  V   + +E  +  GGV R V    +   +K   E L      V   D + L   +  +IS    G D    L HI +D  +NFK
Sbjct:   66 LMNRATWYITDGVQPRLINCLARTVLLTPPERQTLKEMIK-KGADKLYMPCWELGELLACRRLLYGTVDETLAKELYQHYGGVPRFVLCFPEANPSKGLDELLEDLHEAVASCDTKQL-RMSVGSIS---TGPDVSHMLLHIVAD--ENFK 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835WDY3_CHLIN1.410e-637.65Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
D8UKX4_VOLCA5.240e-633.60Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4CSY9_9CHLO5.460e-630.36Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A2K3DTZ5_CHLRE1.840e-533.11Uncharacterized protein n=3 Tax=Chlamydomonas rein... [more]
M4BV81_HYAAE2.260e-529.03Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A150GCZ0_GONPE2.480e-536.11Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A2J8AJ12_9CHLO2.500e-533.33Uncharacterized protein (Fragment) n=1 Tax=Tetraba... [more]
D8UKX3_VOLCA2.830e-536.25Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4CT77_9CHLO2.970e-533.33Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A8J9V5_CHLRE3.170e-530.46Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1107contigP-lacustris_contig1107:289..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.3313465-CDS-P-lacustris_contig1107:288..8011622815397.3313465-CDS-P-lacustris_contig1107:288..801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1107 289..801 +
1693493521.3028884-CDS-P-lacustris_contig1107:288..8011693493521.3028884-CDS-P-lacustris_contig1107:288..801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1107 289..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1107.888.1prot_P-lacustris_contig1107.888.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1107 289..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1107.888.1

>prot_P-lacustris_contig1107.888.1 ID=prot_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=171bp
VSANWYRFSNEGVMKANLYDFVSKGYLDDKTAWYLSDPEYRPFRGFLGVT
VVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVE
ERCRIVGGVARAVFQEEKFQLAKKRIETLVTKLDARMLIEATFATISGDN
RGKDAPDELFHIFSDSSDNFK
back to top

mRNA from alignment at P-lacustris_contig1107:289..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1107.888.1 ID=mRNA_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=515bp|location=Sequence derived from alignment at P-lacustris_contig1107:289..803+ (Pleurocladia lacustris SAG_25_93)
GTTTCGGCAAATTGGTATCGTTTTAGTAATGAAGGGGTGATGAAAGCGAA TCTTTACGACTTTGTTTCTAAGGGGTATTTGGATGACAAAACAGCTTGGT ATCTGAGTGATCCAGAGTACCGGCCGTTTAggGGTTTTCTggGTGTGACG GTTGTGTTCATCTCACCCAACCATCAAAGAACAAACGAGTTCTTGAAAAT AGACGGTGCCGTGCGGGTTTTCATGCCAGTGTGGAACGTGACAGAGCTGT TGGATTGCCGGCTAGCTGTTTACCCTCATGTGCCAGTTGCCGTCGTGGAG GAGCGCTGTCGCATAGTTGGAGGCGTGGCAAGAGCAGTCTTCCAAGAGGA GAAGTTTCAGCTTGCCAAAAAACGCATTGAGACTTTAGTCACAAAGTTAG ATGCGAGAATGCTGATAGAGGCAACTTTTGCTACGATATCTGGGGACAAC CGCGGCAAAGATGCACCTGACGAACTCTTCCATATCTTTTCGGACTCTAG CGATAATTTTAAAGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1107:289..803+

>mRNA_P-lacustris_contig1107.888.1 ID=mRNA_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1026bp|location=Sequence derived from alignment at P-lacustris_contig1107:289..803+ (Pleurocladia lacustris SAG_25_93)
GTTTCGGCAAATTGGTATCGTTTTAGTAATGAAGGGGTGATGAAAGCGAA
TCTTTACGACTTTGTTTCTAAGGGGTATTTGGATGACAAAACAGCTTGGT
ATCTGAGTGATCCAGAGTACCGGCCGTTTAggGGTTTTCTggGTGTGACG
GTTGTGTTCATCTCACCCAACCATCAAAGAACAAACGAGTTCTTGAAAAT
AGACGGTGCCGTGCGGGTTTTCATGCCAGTGTGGAACGTGACAGAGCTGT
TGGATTGCCGGCTAGCTGTTTACCCTCATGTGCCAGTTGCCGTCGTGGAG
GAGCGCTGTCGCATAGTTGGAGGCGTGGCAAGAGCAGTCTTCCAAGAGGA
GAAGTTTCAGCTTGCCAAAAAACGCATTGAGACTTTAGTCACAAAGTTAG
ATGCGAGAATGCTGATAGAGGCAACTTTTGCTACGATATCTGGGGACAAC
CGCGGCAAAGATGCACCTGACGAACTCTTCCATATCTTTTCGGACTCTAG
CGATAATTTTAAAGTTTCGGCAAATTGGTATCGTTTTAGTAATGAAGGGG
TGATGAAAGCGAATCTTTACGACTTTGTTTCTAAGGGGTATTTGGATGAC
AAAACAGCTTGGTATCTGAGTGATCCAGAGTACCGGCCGTTTAggGGTTT
TCTggGTGTGACGGTTGTGTTCATCTCACCCAACCATCAAAGAACAAACG
AGTTCTTGAAAATAGACGGTGCCGTGCGGGTTTTCATGCCAGTGTGGAAC
GTGACAGAGCTGTTGGATTGCCGGCTAGCTGTTTACCCTCATGTGCCAGT
TGCCGTCGTGGAGGAGCGCTGTCGCATAGTTGGAGGCGTGGCAAGAGCAG
TCTTCCAAGAGGAGAAGTTTCAGCTTGCCAAAAAACGCATTGAGACTTTA
GTCACAAAGTTAGATGCGAGAATGCTGATAGAGGCAACTTTTGCTACGAT
ATCTGGGGACAACCGCGGCAAAGATGCACCTGACGAACTCTTCCATATCT
TTTCGGACTCTAGCGATAATTTTAAA
back to top