mRNA_P-lacustris_contig1103.873.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1103.873.1
Unique NamemRNA_P-lacustris_contig1103.873.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.720e-46
Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:   31 KDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQ 354
            KDDQVR PTV VG TWQAIPE+ATIE RLQ +AQTGQ+ Q+RRLLYVEMLKKATA VS+GVQ VPP+TMRAIVQTFESSM+ AAMISSGQGAVLGNPQAVRQPAVRS+
Sbjct:  449 KDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.840e-30
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:  148 QNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQ 414
            Q+RRLLYV+M+K+  A VSAGV+ VPP+T+RAIV+TFESS++ AA ISSGQG VLGNPQAVRQPA RSQG R KSS EYGG  +RRRAQ
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQ 422
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.170e-21
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:   67 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 423
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:   10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.570e-19
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:   67 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 423
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:  755 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-18
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   67 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG 387
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+VQ F+  +H A+ I S  G  + NP  VR P  R  G R+++S + G
Sbjct:  310 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGG 414
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BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.030e-18
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:   67 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFES-SMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 423
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+   +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:  109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229
[Close]
BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.100e-16
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   31 KDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKAT 192
            KDDQVR PT  VG TWQAIPENATIE RLQ +AQTGQ+ Q+RRLL+VEMLKK T
Sbjct:  441 KDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1103.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE1.720e-4684.26MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE4.840e-3073.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK5_9PHAE3.170e-2146.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG6_9PHAE6.570e-1946.72SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI1.080e-1847.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMX3_9PHAE2.030e-1846.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE2.100e-1677.78SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1103contigP-lacustris_contig1103:67090..67518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815394.5032482-CDS-P-lacustris_contig1103:67089..675181622815394.5032482-CDS-P-lacustris_contig1103:67089..67518Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 67090..67518 -
1693493519.8106887-CDS-P-lacustris_contig1103:67089..675181693493519.8106887-CDS-P-lacustris_contig1103:67089..67518Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 67090..67518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1103.873.1prot_P-lacustris_contig1103.873.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1103 67090..67518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1103.873.1

>prot_P-lacustris_contig1103.873.1 ID=prot_P-lacustris_contig1103.873.1|Name=mRNA_P-lacustris_contig1103.873.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=143bp
MDGCAKPQHVKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQ
NRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQ
GAVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQNYSG*
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mRNA from alignment at P-lacustris_contig1103:67090..67518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1103.873.1 ID=mRNA_P-lacustris_contig1103.873.1|Name=mRNA_P-lacustris_contig1103.873.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=429bp|location=Sequence derived from alignment at P-lacustris_contig1103:67090..67518- (Pleurocladia lacustris SAG_25_93)
ATGGATGGTTGCGCTAAACCACAGCATGTCAAGGACGACCAGGTACGCGC
TCCCACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCA
CCATAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAG
AACCGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGT
GAGCGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTAC
AGACTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCAGGGCAG
GGGGCTGTGCTTGGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAG
TCAAGGTACTAGAGAGAAGTCGAGCTCGGAGTATGGCGGGCCGGCGTCTA
GGAGACGCGCGCAGAACTACAGCGGTTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1103:67090..67518-

>mRNA_P-lacustris_contig1103.873.1 ID=mRNA_P-lacustris_contig1103.873.1|Name=mRNA_P-lacustris_contig1103.873.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=858bp|location=Sequence derived from alignment at P-lacustris_contig1103:67090..67518- (Pleurocladia lacustris SAG_25_93)
ATGGATGGTTGCGCTAAACCACAGCATGTCAAGGACGACCAGGTACGCGC
TCCCACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCA
CCATAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAG
AACCGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGT
GAGCGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTAC
AGACTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCAGGGCAG
GGGGCTGTGCTTGGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAG
TCAAGGTACTAGAGAGAAGTCGAGCTCGGAGTATGGCGGGCCGGCGTCTA
GGAGACGCGCGCAGAACTACAGCGGTTGAATGGATGGTTGCGCTAAACCA
CAGCATGTCAAGGACGACCAGGTACGCGCTCCCACTGTCCCGGTCGGTAG
CACTTGGCAAGCAATCCCGGAGAACGCCACCATAGAGTGTAGGTTGCAGA
CCATGGCGCAGACAGGGCAAACAGATCAGAACCGCCGGCTCCTTTACGTG
GAGATGTTAAAGAAGGCCACCGCGACCGTGAGCGCTGGGGTGCAGACGGT
TCCTCCTGAGACTATGCGTGCCATCGTACAGACTTTCGAAAGTAGCATGC
ACACCGCGGCGATGATTTCGTCAGGGCAGGGGGCTGTGCTTGGCAACCCA
CAAGCTGTACGCCAACCAGCTGTTAGAAGTCAAGGTACTAGAGAGAAGTC
GAGCTCGGAGTATGGCGGGCCGGCGTCTAGGAGACGCGCGCAGAACTACA
GCGGTTGA
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