mRNA_P-lacustris_contig1103.867.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1103.867.1
Unique NamemRNA_P-lacustris_contig1103.867.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1103.867.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.440e-46
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 1 
Query:    1 IQDATSAAPPTIHASRSLQGSYNRNSEASSDDYDNSHLEEYLGCFKDDEGDPLLEFAFMSGYCIVDRCYKHCTNEGATFMAVKYDLECSCGFGKEEDYTVNGMGKCGSCLWSDGERNCDRVNSFDLFPLG------EEMTPTP--SSTGLPMPTGFPI 450
            +Q ATSAAPPT  ASR L+ S + +S++ S+DY    L  Y+GCF+DDE  PLLEF F+SG  I++RCY HCT+EGATFM +KY  +CSCGFG+EEDYT+NG G+C    + + + NC    +FDL+ LG        +TP+P  SS G PMPTGFPI
Sbjct:   37 VQHATSAAPPTRQASRHLRDSDDSSSDSDSNDYSPKGL--YVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGTGECTCGCYGERDGNCGGQWAFDLYSLGGGDDSSTSVTPSPTASSIGFPMPTGFPI 192
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BLAST of mRNA_P-lacustris_contig1103.867.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.450e-32
Identity = 75/154 (48.70%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:    1 IQDATSAAPPTIHASRSLQGSYNRNSEASSDDYDNSHLEEYLGCFKDDEGDPLLEFAFMSGYCIVDRCYKHCTNEGATFMAVKYDLECSCGFGKEEDYTVNGMGKCGSCLWSDGERNCDRVNSFDLFPLG---EEMT-----PTPSSTGLPMPT 438
            +Q ATSA PPT  ASR L+ S + +S + S+ Y  S  E Y+GCF+DDE   LLEF F+SG   V+RC+ HCT+EGATF+ +KY  +CSC FG+EEDYT+NG G+     W+           FDL+ LG   +  T     PT SSTG PMPT
Sbjct:   43 VQHATSATPPTRQASRHLRDSDDSSSGSDSNGY--SPWELYVGCFQDDEQSTLLEFGFISGGFNVERCFMHCTDEGATFLGLKYGFQCSCDFGQEEDYTLNGPGE--RLRWA-----------FDLYSLGGGDDSSTSVTSLPTASSTGFPMPT 181
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BLAST of mRNA_P-lacustris_contig1103.867.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.180e-20
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  211 HCTNEGATFMAVKYDLECSCGFGKEEDYTVNGMGKCGSCLWSDGERNCDRVNSFDLFPL--GEEMT------PTPSSTGLPMPTGFP 447
            HCT+EGATFM +KY  +CSCGFG+EE+YT+NG G+C    + D + NC    +FDL+ L  G++ +      PT SSTG PMPTGFP
Sbjct:    2 HCTDEGATFMGLKYGFQCSCGFGQEEEYTLNGTGECACGCYGDRDGNCGGQWAFDLYSLRGGDDSSTSVTPSPTASSTGFPMPTGFP 88
[Close]
BLAST of mRNA_P-lacustris_contig1103.867.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.580e-13
Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:    1 IQDATSAAPPT-IHASRSLQGSYNRNSEASSDDYDNSHLEEYLGCFKDDEGDPLLEFAFMSGYCI-VDRCYKHCTNEGATFMAVKYDLECSCGFGKEEDYTVNGMG-KCG-SCLWSDGERNCDRVNSFDLFPLGEEMTPTPS 414
            +Q ATSA+PPT  HASR L             D D S  E Y+GCF D + D +L+    S   +  ++CY+HC   GA +MA ++  EC C   K+ +Y  +G G +C  SC   +GE  C   ++FDL+ LG      PS
Sbjct:   30 VQHATSASPPTRSHASRHLY------------DSDTSKYE-YIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRHGSGAECDMSCTGVEGE-TCGGNHAFDLYKLGGSADNPPS 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1103.867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJX3_ECTSI3.440e-4653.80Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A6H5JCL1_9PHAE2.450e-3248.70SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZI7_9PHAE1.180e-2052.87SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJW7_ECTSI2.580e-1337.32Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1103contigP-lacustris_contig1103:18425..20410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue6.1e-39
Seed eggNOG ortholog2880.D8LJW8
KEGG koko:K19919,ko:K20412
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Exons4
Model size456
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1103.867.1prot_P-lacustris_contig1103.867.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1103 18426..20410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.9423525-CDS-P-lacustris_contig1103:18425..185231622815393.9423525-CDS-P-lacustris_contig1103:18425..18523Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 18426..18523 -
1693493519.4483075-CDS-P-lacustris_contig1103:18425..185231693493519.4483075-CDS-P-lacustris_contig1103:18425..18523Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 18426..18523 -
1622815393.9544106-CDS-P-lacustris_contig1103:18897..190541622815393.9544106-CDS-P-lacustris_contig1103:18897..19054Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 18898..19054 -
1693493519.4607048-CDS-P-lacustris_contig1103:18897..190541693493519.4607048-CDS-P-lacustris_contig1103:18897..19054Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 18898..19054 -
1622815393.967069-CDS-P-lacustris_contig1103:19428..195811622815393.967069-CDS-P-lacustris_contig1103:19428..19581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 19429..19581 -
1693493519.4690828-CDS-P-lacustris_contig1103:19428..195811693493519.4690828-CDS-P-lacustris_contig1103:19428..19581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 19429..19581 -
1622815393.97867-CDS-P-lacustris_contig1103:20365..204101622815393.97867-CDS-P-lacustris_contig1103:20365..20410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 20366..20410 -
1693493519.4777112-CDS-P-lacustris_contig1103:20365..204101693493519.4777112-CDS-P-lacustris_contig1103:20365..20410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1103 20366..20410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1103.867.1

>prot_P-lacustris_contig1103.867.1 ID=prot_P-lacustris_contig1103.867.1|Name=mRNA_P-lacustris_contig1103.867.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=151bp
IQDATSAAPPTIHASRSLQGSYNRNSEASSDDYDNSHLEEYLGCFKDDEG
DPLLEFAFMSGYCIVDRCYKHCTNEGATFMAVKYDLECSCGFGKEEDYTV
NGMGKCGSCLWSDGERNCDRVNSFDLFPLGEEMTPTPSSTGLPMPTGFPI
P
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mRNA from alignment at P-lacustris_contig1103:18425..20410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1103.867.1 ID=mRNA_P-lacustris_contig1103.867.1|Name=mRNA_P-lacustris_contig1103.867.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1986bp|location=Sequence derived from alignment at P-lacustris_contig1103:18425..20410- (Pleurocladia lacustris SAG_25_93)
ATTCAAGACGCCACCAGCGCAGCACCACCAACCATACATGCAAGCGTGAG
GACTAGCGACCAACCGACCATGCACTCAGTAGTAATGTCTCGCATCATAG
AGCAGAGGTCGAAGTTGGAGGATTCCAAACGGTTACACAACAAACCCTTG
TATGTAGTGTAAATTATACAGGTCTTAGTGTACAACACTATCGAAGGAAC
TTCAGCAACCATGATCGAGCGACTATGGTATGAAAACCCTCCAAGTTTTC
GGATGTAGCCAGAGGGTCTTGCGTGACAAAGTGAATCGTCCTCCCCGAGC
GTTGGATAGACTCAGCCGTTTTGAGGATTACCTTTTTGCTTTTTACGCCC
TCTTTCTTAGAGCATTTCCCTTTTGATGACTAGAAAGAAGAAAGGCTTAT
TCTAGGGGTAACCGGAACCCAGCAGGCTAGCGGCGGGTTGATTCACTTCA
CAATACTGTTCGCGTGTTCTGACGAGTGCGCCACTACGTCCGCCACGTCT
CCGAAGTGCCACAAGTTGGATCGTTTTCTGTGGTTCTTAACGCTTTTCAA
TCTTTTAGTGGGAGGCGGGATGAATCCTAACCCGGGTAGTCTTGCTGCCA
CCAAAACCAGTCAGACATCACTACGTTGACGCCAATCGATATGAAAAGAG
GAGAAACAATCGTTCACCACAGAAGTGAGATGTGACGTTTTTAAAGGTGA
CCTCCACACCTCAACGCTTGGGCTCAATTGCGCTTTGCTCCGAACGATTA
AACTCGGAAAGATGGAACACTAACTTCCAACGGATCCCCCCAACTCTTCC
TCGCCTTGTCCGTTGATCTGTAGCAGCAGCGCAGCCTTCAAGGCTCCTAT
AACCGTAACAGCGAGGCAAGTAGCGACGACTATGACAACAGCCACCTAGA
GGAGTACCTCGGTTGCTTCAAGGACGATGAGGGAGACCCGCTGCTGGAGT
TCGCGTTCATGTCTGGATATTGCATCGTTGATGTGAGATGGTAGAATGAA
GAAATCGGGGCCTCGAAGGTTTTGATCATTCAATTATCGTTTGGATGGAA
GGGCGGTGAGCGTGTAGATATAGTCTCAATGTTCGATTCGTGTTCGATAA
ATGAGCTGTGGATGTGGAAACATCGTCTCAACATCCGATTCAGAGCCCGG
GAGTTCAAGAAGCGTATGGCTTTTTTGTCGTGCACGTACCATCAAAGAGC
TGCGCTTGATGAACCCATCTGTTTGTTTGACCACCGAGATGATATCTTTA
TCTTGGGTACGAGTGTCGTTCCGTGATGCCCACAAACAAACCCATCACCT
ATCATTGTTTGATTTGTTCCCTGCATCGCCCGGCCGTTCCTTCCCCTACC
CACTAGCGTTGCTACAAGCATTGCACCAACGAGGGTGCGACTTTCATGGC
CGTCAAGTATGACCTCGAATGCTCGTGCGGGTTTGGGAAAGAAGAGGACT
ACACGGTAAACGGTATGGGCAAATGCGGGTCCTGCCTCTGGAGCGATGGA
GAACGCAACTGTGGTAAGCTCCCCCCGTCCTCAACTTGTTTCCCTTCACG
CCTGTACTACCTGCTGCAGTTGATGCTTTCGAAAATTGTGTGGCGTGTAG
CTGAGAGCCGGAGCCTTTCATCTCCTTTGTTTCTTTAGAATGCGCATCAA
CATCAAGAACATGGCCCGCCCTCTCGCTCACCCTCCTCTTCAGACCCAAA
AAAATTAGAATATCTGTATACCCGCACGTCCGTCTACCACACCACTGGGC
CTCGATCCTCAAGCTAGGGTATGCCTTCAGCGTCCGTACCGCCGTATCGC
GTCCACCAAGTTCCATGATCGTGGGTCCAACTCTTGAATGAACTTCGTCC
ACCGTGTGCCCGTTCTGCCCCACCGCTGTGTCGTCAGATCGGGTCAATTC
ATTTGACCTGTTTCCCCTCGGAGAAGAAATGACACCGACGCCGTCGTCGA
CAGGCTTACCGATGCCCACAGGCTTTCCGATTCCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1103:18425..20410-

>mRNA_P-lacustris_contig1103.867.1 ID=mRNA_P-lacustris_contig1103.867.1|Name=mRNA_P-lacustris_contig1103.867.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=906bp|location=Sequence derived from alignment at P-lacustris_contig1103:18425..20410- (Pleurocladia lacustris SAG_25_93)
ATTCAAGACGCCACCAGCGCAGCACCACCAACCATACATGCAAGCATTCA
AGACGCCACCAGCGCAGCACCACCAACCATACATGCAAGCCGCAGCCTTC
AAGGCTCCTATAACCGTAACAGCGAGGCAAGTAGCGACGACTATGACAAC
AGCCACCTAGAGGAGTACCTCGGTTGCTTCAAGGACGATGAGGGAGACCC
GCTGCTGGAGTTCGCGTTCATGTCTGGATATTGCATCGTTGATCGCAGCC
TTCAAGGCTCCTATAACCGTAACAGCGAGGCAAGTAGCGACGACTATGAC
AACAGCCACCTAGAGGAGTACCTCGGTTGCTTCAAGGACGATGAGGGAGA
CCCGCTGCTGGAGTTCGCGTTCATGTCTGGATATTGCATCGTTGATCGTT
GCTACAAGCATTGCACCAACGAGGGTGCGACTTTCATGGCCGTCAAGTAT
GACCTCGAATGCTCGTGCGGGTTTGGGAAAGAAGAGGACTACACGGTAAA
CGGTATGGGCAAATGCGGGTCCTGCCTCTGGAGCGATGGAGAACGCAACT
GTGCGTTGCTACAAGCATTGCACCAACGAGGGTGCGACTTTCATGGCCGT
CAAGTATGACCTCGAATGCTCGTGCGGGTTTGGGAAAGAAGAGGACTACA
CGGTAAACGGTATGGGCAAATGCGGGTCCTGCCTCTGGAGCGATGGAGAA
CGCAACTGTGATCGGGTCAATTCATTTGACCTGTTTCCCCTCGGAGAAGA
AATGACACCGACGCCGTCGTCGACAGGCTTACCGATGCCCACAGGCTTTC
CGATTCCGATCGGGTCAATTCATTTGACCTGTTTCCCCTCGGAGAAGAAA
TGACACCGACGCCGTCGTCGACAGGCTTACCGATGCCCACAGGCTTTCCG
ATTCCG
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