mRNA_P-lacustris_contig1102.863.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1102.863.1
Unique NamemRNA_P-lacustris_contig1102.863.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1102.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1102contigP-lacustris_contig1102:9065..9634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size399
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.4897861-UTR-P-lacustris_contig1102:9064..92351622815393.4897861-UTR-P-lacustris_contig1102:9064..9235Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1102 9065..9235 +
1693493519.1389112-UTR-P-lacustris_contig1102:9064..92351693493519.1389112-UTR-P-lacustris_contig1102:9064..9235Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1102 9065..9235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.5056415-CDS-P-lacustris_contig1102:9235..96341622815393.5056415-CDS-P-lacustris_contig1102:9235..9634Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1102 9236..9634 +
1693493519.1472256-CDS-P-lacustris_contig1102:9235..96341693493519.1472256-CDS-P-lacustris_contig1102:9235..9634Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1102 9236..9634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1102.863.1prot_P-lacustris_contig1102.863.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1102 9236..9634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1102.863.1

>prot_P-lacustris_contig1102.863.1 ID=prot_P-lacustris_contig1102.863.1|Name=mRNA_P-lacustris_contig1102.863.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=133bp
MHSSSTAIAPLQVVTAGRTESLCVHSLEGARMRCRHQERCGRRVDPKGKT
ILRGRVDQGQRVNTASVKGSQRSGQQAKGWSRFGFAGGGSGGVSAPPGGS
SGGNSGQEEKVVEPAEGEAGEVPEVRQHHPLR*
back to top

mRNA from alignment at P-lacustris_contig1102:9065..9634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1102.863.1 ID=mRNA_P-lacustris_contig1102.863.1|Name=mRNA_P-lacustris_contig1102.863.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=570bp|location=Sequence derived from alignment at P-lacustris_contig1102:9065..9634+ (Pleurocladia lacustris SAG_25_93)
TGTGATAAGTTTTATGAGCTCCAAAATATTATCACACGGGTGTGCTATCT
TATGTCACCTACGGTAGAGACGGCGGCAGGTCCATGTTTATTTCCTGGGC
TCCCATGAGGTTAAGCCAATCATAGGCCATTTCGGGCACAGCGTACCGTT
CTTGCTGAAGAACTCTCCTGCATGCACAGCAGTAGCACCGCTATTGCTCC
GCTCCAAGTTGTGACGGCAGGACGCACAGAGAGCTTGTGTGTGCATTCTC
TAGAGGGAGCACGGATGAGATGTCGTCATCAGGAACGGTGCGGGCGAAGG
GTAGACCCAAAGGGTAAAACAATTCTGAGGGGTCGCGTCGACCAGGGCCA
GAGAGTGAATACAGCAAGCGTCAAGGGTAGCCAAAGGAGCGGCCAACAAG
CGAAAGGGTGGTCAAGGTTCGGCTTCGCTGGTGGCGGGAGTGGTGGAGTC
TCGGCGCCACCCGGTGGGTCATCTGGTGGCAACAGTGGCCAAGAAGAGAA
GGTGGTGGAGCCCGCTGAGGGCGAAGCTGGCGAGGTGCCCGAGGTGAGGC
AACATCATCCCCTACGATAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1102:9065..9634+

>mRNA_P-lacustris_contig1102.863.1 ID=mRNA_P-lacustris_contig1102.863.1|Name=mRNA_P-lacustris_contig1102.863.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=798bp|location=Sequence derived from alignment at P-lacustris_contig1102:9065..9634+ (Pleurocladia lacustris SAG_25_93)
ATGCACAGCAGTAGCACCGCTATTGCTCCGCTCCAAGTTGTGACGGCAGG
ACGCACAGAGAGCTTGTGTGTGCATTCTCTAGAGGGAGCACGGATGAGAT
GTCGTCATCAGGAACGGTGCGGGCGAAGGGTAGACCCAAAGGGTAAAACA
ATTCTGAGGGGTCGCGTCGACCAGGGCCAGAGAGTGAATACAGCAAGCGT
CAAGGGTAGCCAAAGGAGCGGCCAACAAGCGAAAGGGTGGTCAAGGTTCG
GCTTCGCTGGTGGCGGGAGTGGTGGAGTCTCGGCGCCACCCGGTGGGTCA
TCTGGTGGCAACAGTGGCCAAGAAGAGAAGGTGGTGGAGCCCGCTGAGGG
CGAAGCTGGCGAGGTGCCCGAGGTGAGGCAACATCATCCCCTACGATAGA
TGCACAGCAGTAGCACCGCTATTGCTCCGCTCCAAGTTGTGACGGCAGGA
CGCACAGAGAGCTTGTGTGTGCATTCTCTAGAGGGAGCACGGATGAGATG
TCGTCATCAGGAACGGTGCGGGCGAAGGGTAGACCCAAAGGGTAAAACAA
TTCTGAGGGGTCGCGTCGACCAGGGCCAGAGAGTGAATACAGCAAGCGTC
AAGGGTAGCCAAAGGAGCGGCCAACAAGCGAAAGGGTGGTCAAGGTTCGG
CTTCGCTGGTGGCGGGAGTGGTGGAGTCTCGGCGCCACCCGGTGGGTCAT
CTGGTGGCAACAGTGGCCAAGAAGAGAAGGTGGTGGAGCCCGCTGAGGGC
GAAGCTGGCGAGGTGCCCGAGGTGAGGCAACATCATCCCCTACGATAG
back to top