mRNA_P-lacustris_contig1101.860.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1101.860.1
Unique NamemRNA_P-lacustris_contig1101.860.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: D7FKS5_ECTSI (WD repeat, SAM and U-box domain containing 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS5_ECTSI)

HSP 1 Score: 923 bits (2386), Expect = 0.000e+0
Identity = 511/608 (84.05%), Postives = 540/608 (88.82%), Query Frame = 1
Query:  247 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVTTDD-EINAVGADGASIASNDKGGDAVSRARPPRPGDN-SAAMRTRSKAGGNASGVKEGATTDQEESGG--GQRDRGRPTSAHSAKSSSS-KVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRFSVTLETMVVEKELTADNRNHFISLAKEQGHRSSPLWGASRESNGPVGRDEMDSMSGR 2055
            VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNL+RLIKDLL EGGEGLY+YRVDS    XXXXXXXXXXXXXXXXXXX   RE++GNREYRFALV EQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGI+FDKEEK FSLCDFGSAGGTFVRLASGVPTPLYP MMIMLGKHQLE+TN   +D ++ AV ADGASIA+ DKGGD  SR+RP RPGDN SAA R+R  AG     VKEGATTDQEESGG  GQR+R RPTSA SAKSSSS KVEEE+SVLRIGG  T ADG+SS GDGP G LL+DS EHR RQDSSRSPLPHENAAGGEDDASVLDTPL+DKH EGEGGAS DEKE    +EGLE+SFEAG+KLARGHRRVCLECFAPEGTPIQ S   RFFVGR+GATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDE+GDFLHIMDGTPTK STNGTWFRLSGMH ESRPYPLSNG+EILIGTVRFSVTLE+MVVEKELT DNRNHF+SLAK+Q  RSSP WGA R+S    GR +  + SGR
Sbjct:    8 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVDSDEEGXXXXXXXXXXXXXXXXXXXG--REKEGNREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITNACPEDVDVKAVDADGASIAAEDKGGDDASRSRPSRPGDNASAAARSRGTAG-----VKEGATTDQEESGGRGGQRERARPTSAQSAKSSSSSKVEEELSVLRIGGAGTGADGVSSAGDGPAGGLLLDSVEHRVRQDSSRSPLPHENAAGGEDDASVLDTPLQDKHGEGEGGASGDEKE----LEGLERSFEAGLKLARGHRRVCLECFAPEGTPIQGS---RFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGAEILIGTVRFSVTLESMVVEKELTVDNRNHFMSLAKDQDRRSSPPWGAGRQSGSRGGRVDQANRSGR 601          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A6H5KH40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH40_9PHAE)

HSP 1 Score: 637 bits (1644), Expect = 1.590e-219
Identity = 375/516 (72.67%), Postives = 401/516 (77.71%), Query Frame = 1
Query:  382 SPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVTTDD-EINAVGADGASIASNDKGGDAVSRARPPRPGD-NSAAMRTRSKAGGNA-----------SGVKEGATTDQEESGG--GQRDRGRPTSAHSAKSSSSKVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRF 1884
            S +TGQPMEQLSLVPNLNL+RLIKDLL EGGEGLY+YRV+S       XXXXXXXXXXXXXXX    RE++G+REYRFALV EQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAML GADFMQFSDATVSRRHFGI+FDKEEK FSLCDFGSAGGTFVRLASGVPTPLYP MMIMLGKHQLE+TN   +D ++ AV ADGASIA+ DKGGD  SR+RP RPGD  SAA R+R  A               +GVKEGATTDQEESGG  GQR+R RPTSA SAKSSSSKVEEE+SVLRIGG  T A+G+SS GDGP G LL+DS EHR RQDSSRSPLPHENAAGGEDDASVLDTPL+DK                                      V L C           +  RFFVGR+GATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDE+GDFLHIMDGTPTK STNGTWFRLSGMH ESRPYPLSNG+EILIGTVR 
Sbjct:   15 SSQTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVESDEEGDGPXXXXXXXXXXXXXXXG---REKEGDREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLDGADFMQFSDATVSRRHFGIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITNACPEDVDVKAVDADGASIAAEDKGGDNASRSRPSRPGDIASAAARSRGTAXXXXXXXXXXXXXXXAGVKEGATTDQEESGGRGGQRERARPTSAQSAKSSSSKVEEELSVLRIGGTGTGAEGVSSAGDGPAGGLLLDSMEHRVRQDSSRSPLPHENAAGGEDDASVLDTPLQDK--------------------------------------VLLFC----------GSGSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGAEILIGTVRI 479          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A835Z8M7_9STRA (WD repeat, SAM and U-box domain-containing 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M7_9STRA)

HSP 1 Score: 459 bits (1180), Expect = 8.000e-150
Identity = 280/569 (49.21%), Postives = 330/569 (58.00%), Query Frame = 1
Query:  247 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVTTDDEINAVGADGASIASNDKGGDAVSRARPPR------PGDNSAAMRTRSKAGGNASGVKEGATTDQEESGGGQRDRGRPTSAHSAKSSSSKVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTP----LRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRFSVTLETMVVEKEL 1923
            V+G  LRDEF+CPITRELMRDPVIAADGHTYDREAIEMWLR HDTSPK GQPM+ L LVPN NLKRLIKDL+ EGGEGLY+    +                               +  YRFALV E +L+LKCLGP +SDWN K+FRVTERGCVGGRK PA L GADFM FSDATVSR+HF + FDK +K F + D GSAGGTFVR+  GVP PLYPG+MIMLGKHQL VT                        GD  +   PPR      P D+   M   SK                        D  RP++                V +  GG     G     DG  G  + ++T H G  D++   L  E A GG DD SV DTP      +  ++G   A D+  E+         ++E   KLARGHR + LECFAPEGTPIQ     ++ VGR GATLGR+Q+N+IAFSH + G +MGID+SISGEHAR+ Y    D L ++DGTP K STNGTWFRLS MH  S P+ L +G E+L+GTVRFS   E MVVE EL
Sbjct:    8 VKGHRLRDEFACPITRELMRDPVIAADGHTYDREAIEMWLRTHDTSPKAGQPMDHLFLVPNHNLKRLIKDLIYEGGEGLYVKEEGADCGP---------------------------DAPYRFALVPEHVLILKCLGPVESDWNGKTFRVTERGCVGGRKMPAELHGADFMHFSDATVSRKHFEVFFDKTDKCFKIRDEGSAGGTFVRVPYGVPKPLYPGLMIMLGKHQLLVTEPNR--------------------GDKQAPRLPPRSEPDVLPDDSGVDMAADSK------------------------DGSRPSTP---------------VCQSMGGK---GGRLRGEDGTGGGHVANAT-HMGGLDAA---LAVEEAPGGADDDSVADTPSPAMAAESKDDGAAMAMDEGDERSFGA-----AYEVEAKLARGHRALHLECFAPEGTPIQGR---QYAVGRDGATLGRKQSNSIAFSHMANGQLMGIDSSISGEHARVEYSAARDCLLVLDGTPAKPSTNGTWFRLSQMHARSAPHALRDGMELLVGTVRFSAAHEMMVVEVEL 475          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 4.490e-148
Identity = 307/605 (50.74%), Postives = 353/605 (58.35%), Query Frame = 1
Query:  100 QEGVVDASHLCRLRYCRMCPPSAGTMGCSHLFNFLVLLSYPILSYLTRKVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQG-NREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVT-TDDEINAVGADGASIASNDKGGDAVSRARPPRPGDNSA-AMRTRSKAG---GNASGVKEGATTDQEESGGGQRDRGRPTSAHSAKSSSSKVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRFSVTL 1896
            Q  V +A  LCR     +       +G   +   L  L+      L +++ G  LRD F+CPIT ELMRDPV+  DGHTYDREAIEMWLR + TSPKTG+P+E+L LVPNLNL+RLIKD L EGGE LY+   D                           R   G +RE RFALV EQILVLKCLG      N +SFRVTERGCVGGR QP  LAGA+F+Q SDATVS+RHFGI FDKE+K FSL D GSAGGTFVRL  GV T LYPGM+I+LG+HQLEV +V+ TD E  AV  D    A  DKG +A S + P  PG++S+ A R R  A    G+A+ V +G TTD     GG+R+   P S   AKSSSSK                                                                      +HEEGEGG SDDEKE            EAG K  R + RVCLECFAPEGTPIQ     RFFVGR+GATLG R+TNTIAFS+ESGGTVMGID  ISG HARIVYD+ G F HI DG   K+S NGTW RLSG H ESRPYPLS+G+EILIGTV FSVTL
Sbjct:  994 QGNVKEAKRLCRAALHTL--DGENPLGRPQVAAVLATLA----DLLGKEMHGFTLRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEPIERLLLVPNLNLRRLIKDFLIEGGEELYVGGRDGDGGDQDDGSGEVDRDEGDGGESGWEERSGTGEHRECRFALVTEQILVLKCLGSVYPGGNIESFRVTERGCVGGRNQPNTLAGAEFVQISDATVSKRHFGIAFDKEDKLFSLRDLGSAGGTFVRLELGVSTLLYPGMIILLGRHQLEVIDVSSTDSEAKAVEGDRNPFAVGDKGSNATSPSSPSAPGNSSSTAARRRGMACSIVGSAAIVNKGPTTD-----GGEREPRHPISPQPAKSSSSK----------------------------------------------------------------------QHEEGEGGISDDEKE-----------LEAGAKPGRRNPRVCLECFAPEGTPIQGK---RFFVGREGATLGGRKTNTIAFSYESGGTVMGIDDFISGVHARIVYDDGGGFFHITDGNSFKSSKNGTWVRLSGKHTESRPYPLSHGTEILIGTVPFSVTL 1503          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A7S2NWM2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWM2_9STRA)

HSP 1 Score: 307 bits (786), Expect = 1.820e-90
Identity = 213/597 (35.68%), Postives = 300/597 (50.25%), Query Frame = 1
Query:  256 SALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWL------RNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEG-GEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXR---------------RERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGAD--------FMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQL-----EVTNVTTDDEINAVGADGASIASN-DKGGDAVSRARPPRPG-DNSAAMRTRSKAGGNASGVKEGATTDQEESGGGQRDRGRPTSA---HSAKSSSSKVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPT-KASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRFSVTLETMVVEKEL 1923
            S LRDEF+CPITRE++ +PVIAADGHTYD+ AIE W+      R   TSPKTG+ +E L L+PN NLKRL++D+L EG G+ LY    D+                                              N +   ALV E++L LKCLGP +S+WN++SF+VTE GC+GGR++P + A           F+QF++ATVSRRHF I +DK  + F + D GSAGGTFVR+  G    + PG MIM+GKHQL     E+++         +   G ++  + D+    ++      PG D        S+   +A   +     DQEE         +P  A   H         E + ++L+            + GD        D    R   D  +  +   + A  E++  V  + L D +                       ++ +      G   + L CFAPEGTPIQ   +  + + + GATLGR+Q+NTI+FSHE  G  +GID+S+SGEHA + Y+E+     + DG    K STNGTW RLSGMHKES  Y ++N +E+L GTVRF V+++  VVE+EL
Sbjct:   23 SKLRDEFTCPITREIISEPVIAADGHTYDKSAIEQWIHFMQNKRMKPTSPKTGEELEHLHLIPNHNLKRLLRDMLVEGRGDALYQPDADAMAKQQENASSSDKDAQSYNCDNVSSXXXXXXXXXVQTTVMANASASNSKGGMALVREKVLNLKCLGPNESEWNNRSFKVTESGCIGGRRRPTVTAEKQNDRLKQLHFIQFTEATVSRRHFEICYDKNVEEFRIRDLGSAGGTFVRIPPGKSHVMAPGTMIMVGKHQLVAEKFELSSAAAAAHQEEIAGSGDAVVGDVDEDVQRLNDRSSTSPGPDQXXXXXXXSQMSASALTPRNDVAEDQEE---------KPMEAAQHHYQHLMDHNEETDCNILQWADMQKAPSNEGTAGD--------DCVSVRSSVDCDQDSM---SVASAENNLPVTQS-LVDSNS----------------------NYVSATNSVNGPPVLMLRCFAPEGTPIQ---NKEYPISKMGATLGRKQSNTISFSHEVNGNQVGIDSSVSGEHANLKYNENTKLFELSDGVGIGKCSTNGTWVRLSGMHKESGFYAIANQTELLFGTVRFQVSIDEQVVEREL 573          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A7S3MFD7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFD7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.670e-75
Identity = 214/615 (34.80%), Postives = 301/615 (48.94%), Query Frame = 1
Query:  244 KVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAM--LAGADFMQFSDATVSRRHFGIVFDKE----EKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVTTDDEINAVGADGASIASNDKGGDAVSRARPPRPGDNSAAMRTRSKAGGNASGVKEGATTDQEESGGGQRDRGRPTSAHSAKSSSSKV------------EEEVSVLRIGGGMTEADGLSSVGD-----GPNGVLLVDSTEHRG-------RQDSSRSPLPHE-NAAGGEDDASV-----LDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAF----SHESGGT-VMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTVRFSVTLETMVVEKELTADN-RNHFISLAK 1962
            +++G  +RDEF CPIT ELMRDPV+A+DGHTY++ AIE WL+NH  SP++G+PM+ L+ +PN+N+K+LI+D++NEGG G YM  +                                 N++  F +  E+ILVL+CLGP +SDWN  SF+V   GC+GGRK      +   + + F D TVSRRHF I    +       F + D GSAGGTF+R+  G    L+PGM+I+LGKHQ  +++V  DD  +A G      A + K    VS  +     ++ A M     A    S          +E     ++     S+H A  +   V            EEE     + G    ADG SS  D     G +   +   T++         +  + R+   H+ NA   E D        + TP+   H  G+              +G  + + A        RR  L C AP+G+P+Q  +   F V ++GA +GR+ TNTI        E+G   VM +D +IS EHARI ++       I DGT  K STNGTWFRLSG H+ES  + LS G E+LIGTVRF V+    + E  L +    N F   AK
Sbjct:   33 RLKGMKIRDEFICPITYELMRDPVVASDGHTYEKAAIEKWLKNHKISPRSGEPMDVLT-IPNINIKKLIQDIINEGGHGFYMSDIS--------------------------------NKDRMFEVRPEKILVLECLGPPESDWNSLSFQVNRFGCIGGRKHNPNDNMNNREPILFKDITVSRRHFEITNSVDIPTGGSVFHIRDLGSAGGTFIRIPHGKRKQLHPGMIILLGKHQFTISSV--DDAPSAGGQSFTGPAGSSKN---VSMRKSSL--NSEAIMSLVENAEKIISDFAGPGAAPNDELSERLKNLTMQLSSHLADDAPLTVGHDIRLTDHSLNEEERLSSPVLGRPPLADGRSSRADHKGDKGGDDDQMGSHTDNXXXXXXXXPKLTTMRTASAHDMNALHYEPDVDFDADAKMTTPMTHAHTGGD-------------AKGGFQRYTA--------RRCTLTCCAPDGSPLQGHS---FIVDKEGAMMGRKATNTIPLLMKIEMENGEERVMNVDTAISSEHARIEFEPATGQFFICDGTVDKPSTNGTWFRLSGPHQESSSHVLSAGVEVLIGTVRFLVSESMTISEHGLDSKGISNSFSEAAK 583          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A7S1XUU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUU4_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.760e-68
Identity = 116/236 (49.15%), Postives = 148/236 (62.71%), Query Frame = 1
Query:  247 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVT 954
            VRG  LRDEF CPITRELM+DPVIAADGHTYDR AIE WL NH  SPKTG+ ME + L+ N+NL +LI+DL+NEGGEGLYM   D                                   YR+AL+ +++L  KCLGP +S WN +SFRV   G +GGR++P+ L   D + FSDATVSRRHF IV    +  + + D GSAGGTF+R+      P++ G+M M+GKHQ+   ++T
Sbjct:   44 VRGGQLRDEFVCPITRELMKDPVIAADGHTYDRSAIEQWLLNHRRSPKTGEVMESVGLIRNINLLKLIRDLVNEGGEGLYMAESDKASENKSLPGG------------------------YRYALLRQKVLTFKCLGPAESSWNGRSFRVFANGVLGGRRRPSKLTERDHVTFSDATVSRRHFEIVHSTADSRYYIRDIGSAGGTFLRIQMNEKIPVFHGLMFMVGKHQMSARDLT 255          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: W7U452_9STRA (SMAD/FHA domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U452_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.580e-59
Identity = 197/638 (30.88%), Postives = 269/638 (42.16%), Query Frame = 1
Query:  247 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHF----GIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQLEVTNVTTDDEINAVGADGASIASNDKGGDAVSRARPPRPGDNSAAMRTRSKAGGNASGVKEGATTDQEESGGGQRDRGRPTSAHSAKSSSSKVEEEVS------------------VLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSRSPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKSFEAGVKLARGHRR--VCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYD-EDGDFLHIMDGTP-TKASTNGTWFRLSGMHKESRPYPLSNGSEILIGTV-RFSVTLETMVVEKEL-----------TADNRNHFISLAKEQGHRSSPLWGASRESNGPVGRDE-MDS 2043
            VRG  +RDEF CPIT ++ RDPV+A DG TY+R AI  WL  + TSP T + +    LVPNLNLKRLI DL+ EGG GL      +                               + E  F L  + ++VL+CLGP +SDW  +S  VT+ G +GGR++  +  G D M F D TVSRRHF    G V +     F + D GSAGGT++RL       L  G MI++GKHQ  V + +   E+                         P P     A RT                             G+   A  A  +S+ +   +S                            A G     D             RGRQ                      D PL                  ++    L++     V    G  +  + L+CFAPEG+P+Q   H  F VG +GA++GR+Q+NT++ S E GG V+G+D+++SGEH RI Y  E G F+ +  G    K STNGTW RLS +H  S    +    EIL+G + RFSV+ ET ++E  +           T              G  S+P     +E NGP+GR+E MD+
Sbjct:    9 VRGR-IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEEL----------------------------SHETAFGL--DDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRR-ILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQL-----------------------PAP-----ACRT-----------------------------GQSAVAFEAFHNSATIPTPLSPGAXXXXXXXXXXXFXXXXXXXXXXXXXALGTEDPNDSIXXXXXXXXXGLRGRQGQ--------------------DFPLG-----------------RLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQ---HRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKE-NGPIGREEPMDT 516          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A7R9UA93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA93_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.570e-56
Identity = 108/230 (46.96%), Postives = 142/230 (61.74%), Query Frame = 1
Query:  247 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIMLGKHQL 936
            VRG  LRDE+ CPITREL+RDPV+AADGHTY+R AIE WL +H  SPKT + ME  +L PN+NL +LI+DL+ EGGEGLY+                                       Y+ AL+ +++L LKCLGP DS WN++SFRV   G +GGR+ P      D + F DATVSRRHF I+ ++ +  F + D GSAGGTF+R+      P++PG+M M+GKHQ+
Sbjct:   52 VRGRQLRDEYVCPITRELLRDPVMAADGHTYERVAIEKWLVSHRRSPKTQKVMESNTLFPNINLLKLIRDLVAEGGEGLYVLEDTESMAEDSDMPGG-----------------------YQNALLWQKVLTLKCLGPADSSWNNRSFRVFPHGVLGGRRTPTRQTDRDHIAFGDATVSRRHFEIIQNEADFLFYIRDLGSAGGTFLRVQEKEKIPVFPGLMFMVGKHQM 258          
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Match: A0A482RTF3_9ARCH (FHA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF3_9ARCH)

HSP 1 Score: 197 bits (501), Expect = 1.730e-54
Identity = 100/229 (43.67%), Postives = 143/229 (62.45%), Query Frame = 1
Query:  238 TRKVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLIKDLLNEGGEGLYMYRVDSXXXXXXXXXXXXXXXXXXXXXXXXXRRERQGNREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQ-PAMLAGA-DFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLYPGMMIM 918
            ++ +RG  +RDEF CPIT ELMR+PV+A+DGHTY++ AI+ WL+ + TSP++G+PM+ L  +PN+NLK+LI+D++NEGG G Y   +                                 N++  F +  E++L+L+CLGP +SDWN +SF+V + GCVGGRK  P   A   + + F D TVSRRHF + +DK    F L D GSAGGTF+R+  G    L+PGM+I+
Sbjct:   15 SKVMRGMKIRDEFLCPITYELMREPVVASDGHTYEKNAIDKWLKTNHTSPRSGEPMDNLC-IPNINLKKLIQDIINEGGAGFYTSDIS--------------------------------NKDRIFEVCPEKVLILECLGPPESDWNLQSFQVNKLGCVGGRKHNPEDSANLREIVLFKDITVSRRHFEVTYDKNS--FFLRDLGSAGGTFLRIRYGAKKQLHPGMIIL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1101.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS5_ECTSI0.000e+084.05WD repeat, SAM and U-box domain containing 1 n=1 T... [more]
A0A6H5KH40_9PHAE1.590e-21972.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8M7_9STRA8.000e-15049.21WD repeat, SAM and U-box domain-containing 1 n=1 T... [more]
D7FNJ7_ECTSI4.490e-14850.74Armadillo/beta-catenin repeat family protein / U-b... [more]
A0A7S2NWM2_9STRA1.820e-9035.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3MFD7_9STRA1.670e-7534.80Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1XUU4_9STRA1.760e-6849.15Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7U452_9STRA2.580e-5930.88SMAD/FHA domain protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9UA93_9STRA1.570e-5646.96Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482RTF3_9ARCH1.730e-5443.67FHA domain-containing protein (Fragment) n=1 Tax=a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1101contigP-lacustris_contig1101:51859..58845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score926.8
Seed ortholog evalue5.5e-267
Seed eggNOG ortholog2880.D7FKS5
Preferred nameKIAA1107
KEGG koko:K10480
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0167@1,KOG0167@2759
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-21_001960.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons9
Model size2604
Cds size1908
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.334163-UTR-P-lacustris_contig1101:51858..524041622815393.334163-UTR-P-lacustris_contig1101:51858..52404Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1101 51859..52404 -
1693493519.021822-UTR-P-lacustris_contig1101:51858..524041693493519.021822-UTR-P-lacustris_contig1101:51858..52404Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1101 51859..52404 -
1622815393.4539597-UTR-P-lacustris_contig1101:58695..588451622815393.4539597-UTR-P-lacustris_contig1101:58695..58845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1101 58696..58845 -
1693493519.1309562-UTR-P-lacustris_contig1101:58695..588451693493519.1309562-UTR-P-lacustris_contig1101:58695..58845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1101 58696..58845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.3516228-CDS-P-lacustris_contig1101:52404..525871622815393.3516228-CDS-P-lacustris_contig1101:52404..52587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 52405..52587 -
1693493519.03511-CDS-P-lacustris_contig1101:52404..525871693493519.03511-CDS-P-lacustris_contig1101:52404..52587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 52405..52587 -
1622815393.3638031-CDS-P-lacustris_contig1101:53124..532201622815393.3638031-CDS-P-lacustris_contig1101:53124..53220Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 53125..53220 -
1693493519.0448117-CDS-P-lacustris_contig1101:53124..532201693493519.0448117-CDS-P-lacustris_contig1101:53124..53220Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 53125..53220 -
1622815393.3773668-CDS-P-lacustris_contig1101:53429..536131622815393.3773668-CDS-P-lacustris_contig1101:53429..53613Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 53430..53613 -
1693493519.055158-CDS-P-lacustris_contig1101:53429..536131693493519.055158-CDS-P-lacustris_contig1101:53429..53613Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 53430..53613 -
1622815393.389629-CDS-P-lacustris_contig1101:54732..549021622815393.389629-CDS-P-lacustris_contig1101:54732..54902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 54733..54902 -
1693493519.0668695-CDS-P-lacustris_contig1101:54732..549021693493519.0668695-CDS-P-lacustris_contig1101:54732..54902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 54733..54902 -
1622815393.403579-CDS-P-lacustris_contig1101:55164..556561622815393.403579-CDS-P-lacustris_contig1101:55164..55656Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 55165..55656 -
1693493519.0754817-CDS-P-lacustris_contig1101:55164..556561693493519.0754817-CDS-P-lacustris_contig1101:55164..55656Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 55165..55656 -
1622815393.4147925-CDS-P-lacustris_contig1101:56053..561701622815393.4147925-CDS-P-lacustris_contig1101:56053..56170Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 56054..56170 -
1693493519.0831265-CDS-P-lacustris_contig1101:56053..561701693493519.0831265-CDS-P-lacustris_contig1101:56053..56170Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 56054..56170 -
1622815393.424582-CDS-P-lacustris_contig1101:56921..570891622815393.424582-CDS-P-lacustris_contig1101:56921..57089Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 56922..57089 -
1693493519.091445-CDS-P-lacustris_contig1101:56921..570891693493519.091445-CDS-P-lacustris_contig1101:56921..57089Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 56922..57089 -
1622815393.4345582-CDS-P-lacustris_contig1101:57905..581631622815393.4345582-CDS-P-lacustris_contig1101:57905..58163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 57906..58163 -
1693493519.1008017-CDS-P-lacustris_contig1101:57905..581631693493519.1008017-CDS-P-lacustris_contig1101:57905..58163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 57906..58163 -
1622815393.4443383-CDS-P-lacustris_contig1101:58455..586951622815393.4443383-CDS-P-lacustris_contig1101:58455..58695Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 58456..58695 -
1693493519.1170921-CDS-P-lacustris_contig1101:58455..586951693493519.1170921-CDS-P-lacustris_contig1101:58455..58695Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1101 58456..58695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1101.860.1prot_P-lacustris_contig1101.860.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1101 52405..58695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1101.860.1

>prot_P-lacustris_contig1101.860.1 ID=prot_P-lacustris_contig1101.860.1|Name=mRNA_P-lacustris_contig1101.860.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=636bp
MCPPSAGTMGCSHLFNFLVLLSYPILSYLTRKVRGSALRDEFSCPITREL
MRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLKRLI
KDLLNEGGEGLYMYRVDSDGEGEGDGSSRGGPEQEGRGGGGGGRRERQGN
REYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGA
DFMQFSDATVSRRHFGIVFDKEEKHFSLCDFGSAGGTFVRLASGVPTPLY
PGMMIMLGKHQLEVTNVTTDDEINAVGADGASIASNDKGGDAVSRARPPR
PGDNSAAMRTRSKAGGNASGVKEGATTDQEESGGGQRDRGRPTSAHSAKS
SSSKVEEEVSVLRIGGGMTEADGLSSVGDGPNGVLLVDSTEHRGRQDSSR
SPLPHENAAGGEDDASVLDTPLRDKHEEGEGGASDDEKEKKMEVEGLEKS
FEAGVKLARGHRRVCLECFAPEGTPIQASTHGRFFVGRKGATLGRRQTNT
IAFSHESGGTVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKASTNGTW
FRLSGMHKESRPYPLSNGSEILIGTVRFSVTLETMVVEKELTADNRNHFI
SLAKEQGHRSSPLWGASRESNGPVGRDEMDSMSGR*
back to top

mRNA from alignment at P-lacustris_contig1101:51859..58845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1101.860.1 ID=mRNA_P-lacustris_contig1101.860.1|Name=mRNA_P-lacustris_contig1101.860.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6987bp|location=Sequence derived from alignment at P-lacustris_contig1101:51859..58845- (Pleurocladia lacustris SAG_25_93)
TACAGAAACATCTCTATCTGCTGGCTGTGTATAGATGTAGAATACGAGGT TCAAGATATATTTGTAGCAATTAATCACAAAACCACTCGTGTCTCTCTTC AAGAGGGTGTTGTGGATGCAAGTCATTTGTGTCGGTTACGATACTGCCGT ATGTGTCCTCCCTCAGCTGGAACTATGGGATGCTCACATTTGTTCAATTT TCTCGTTTTGCTGTCCTATCCTATCCTATCCTATCTCACGCGAAAGGTAC GCGGGTCCGCCCTCCGGGATGAGTTCTCTTGTCCCATCACGCGTGAGCTC ATGCGAGACCCGGTGATTGCTGCGGACGGTCACACCTACGACAGGGAGGC CATCGAAATGTGGCTGAGAAACCATGACACCTCTCCTAAGGTATTTAAAG AGGTTCTGTCTCCTGGTTCTCTGCTGTTGTGCCAAATGGCTCTGTTGATT GCCTATGCGGCGTCATATTCGATCGATCACTGCTGTGTGACTTCAAGATC ACATTCTCTCGCGAAGTATTTACACGTTTCTGGTCCAAATCCGAACGTAG TCTACAAGCGCCTACGACATTTGTATTTGCATTTTGCCTGTTTTTTGTCT TTTCTTCGCGTCCTTGCGCTCGCTGCTGGTAACGCGAGCCTATCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGACTGGCCAGCCTATGGAG CAACTCTCGCTGGTGCCCAACCTGAACCTCAAGCGGCTGATCAAGGACCT CCTTAACGAAGGGGGCGAGGGGCTCTACATGTACCGAGTGGACAGCGATG GTGAAGGCGAAGGCGATGGCTCGAGTAGGGGTGGTCCCGAGCAAGAAGGC AGAGGGGGAGGAGGAGGAGGAAGGCGAGAGAGGCAGGGGAATCGGGAATA CCGCTTCGCGCTTGTCGCCGAGCAGATCCTCGTACTCAAGGTGTGTGTGT GTGTGTGTGTGTGTGTGTTTCATTTATTGGCATCGACCGCGCTAACCGGC TGACCAATGAAAAGGCGTCAGTGTCAGCGGGTAAATCAAAGTGTGTGTGT GCGAGTATGCTTACGATTATGCATACGAGTGTGAGTTGAGTTTGCGCAAA TTGAGGAAGGCGTGCATGCATGGCATAACAAGCTTAGGGGGCGAGAGAGA ATTGAGCGCATCGGACTGAGCGTTCCTGAAGCAGAAAGAAATTATCGCGG ACTTGGCACTCATCGAATCGTCTTCCGTAGATCCCCCAGCGGTGCATTGT CCTATCCAATCCGACGGCTGCGAGCGCGGTTAAGTACACTATTGGCAATG ATGGAGCAAAGTTTGTGAACATCGAGAAGAAGCTCGCTAGAGAATGTGGA GTGGAGTTGTGGATACGCCGCAGACATTCCGGATGATCCCTGAATCATTT TTTATATCGTTTCCCATCTGTTTGTTTTTATTTCTTTAGACCCCAAGTGC GGTCTCGCCGACCCCTGTCTAGTTTTTCCAGCGATCAGTCTGGCCAGACT TCCAGATGTATAGCTGGCTCCTAGTCCGAAAGGAACGGAGATCTTTGACC ACCGACTTTCTATCGATACGTTACATTTAGGGGAAGGGTTACGTGGACCC TGGCCTCCTCTACTGAAGCACAAGACTGTCCCGCTCATCTTGGGCATCGA AACTCTGCGTGCTCGGTAACCTCGGGGTAATTGTGCGAACCCTTAACCTT CGTGTCGTGCCGCGGTCTCCCGCTGCGATTGGTACCGTTCAAACTTTTGT TGGCAGTGCCTGGGCCCTACGGATTCCGACTGGAACGACAAGTCCTTTCG TGTGACGGAGCGCGGGTGTGTTGGCGGTCGCAAGCAGCCGGCCATGCTGG CAGGAGCGGACTTTATGCAGTTCTCGGACGCCACTGTGAGCAGGCGCCAC TTCGGAATCGTCTTCGATAAGGAGGTGCGTCACACGCCCATCAGCCGTTG TTGTAGCCATCATCATCGAGCAGATATCATATATCAACTTATCTTGTGCT GTTCGTTGATGGCGGCTTTATTGTTTCCGACATATGCCGTATCTCAACGA CGGACCCCCTGTTCCCTACCTCGGCGTAGTTCCGGTTGGGAGAGGGGGCG GCGGGAGGGGGCATGGCACGTTTTCTCTCGCCGAGGCTCCCTAACCTTCC TTGGTGCGGTGCTTGCTTTCGAAGTTCGTCAACCGTCAAACGAGACATGT CCAAGTCCAAGTTCGTTATCCTCCCCTCGAGGCTGCCCATAAGCCATCGC TTGAACTGCAGTGTGGGATAGTGAACAATTACTCTGGGCACTTGAGTCTT CGGCAATGTTTCCGATCTCTGTCTCTAGGATCAGCGCGGAGTTGTTGTTT GTAATACTGCGTAGATGCAGGTCAGGGCGATTTTGGTTTGCAGGACACGA CTACGACGACAACAACATTGCACCTTGGAAGCACAAGCGCATGGCCAGAC CATCCACAAGAATGCGAGTCACCTCGTACCGATCGGGTATGGTATCCAGA TGGTGTCAGAATGGATTCAATTATATTGCATGTTGCGTGCTCGAAACTCC AGAGTGTATACTTGGCGGAACTAACTCCTTACATGTACGGTGATGGGTCC CGACTCTCCTCCATCTTTTTCTAGCTTCCCTGCTGACGTCGCTGCTGTAC CGCTTGCCGATGCTCCGTTACCCAGGAGAAACATTTTTCGCTGTGCGACT TCGGAAGTGCAGGCGGGACCTTCGTTCGGCTTGCTTCAGGGGTGCCCACA CCCCTCTACCCCGGCATGATGATAATGCTCGGGAAGCACCAGGTGTGTTA GTTTCGTCTTATTAGCGCCGTATCGCAAAGAGCTTGGGAGCCGCGACGTT TGTATCGGAGATGAAATGCTTGAGATGAGGTTTACTGGCGTGTTTTTCGA TGATCGAAGGTGCACCAATATGCGGGAAGGTCGTCGCGTGTGCGGTAGTC CGAGCGGGGCACTAGTTCCGTACCGACTATTTTGTTTGATGTACTCCACT GCGTGACTTAGACGCATGGGAGAGAAAGGAATGCGCCTTGCGCTACGAGC AGAAGTGCGCATTCCGCCCTTGACAATTCTCTTCCAGAGTGTGTACCATG TTTTCTCTGCGGCAACAGGCTCGCTCACTTGCCTCACACCTTACCTCGAC CCCCCCCTCACCCCTTTCCGTATCCTCTCGCATCACCAGCTGGAGGTGAC AAATGTCACCACTGACGACGAAATAAACGCGGTTGGCGCTGACGGTGCTT CCATCGCCTCGAATGACAAAGGCGGCGACGCCGTATCGCGTGCTAGACCG CCAAGACCAGGGGATAACTCGGCGGCGATGCGCACCAGAAGCAAGGCCGG CGGCAACGCGTCGGGCGTAAAAGAAGGGGCCACGACAGACCAGGAGGAAA GCGGAGGTGGGCAGCGAGATCGCGGCCGCCCGACCAGCGCCCATTCGGCC AAGTCTTCGTCCTCGAAGGTGGAGGAGGAGGTTTCGGTGTTGAGGATCGG GGGAGGCATGACGGAAGCCGACGGATTGTCTTCCGTGGGGGATGGCCCCA ACGGCGTATTGCTGGTGGACAGTACGGAGCACCGGGGGAGGCAGGATAGC AGTAGGTCGCCGCTACCTCACGAAAATGCGGCCGGCGGAGAGGACGATGC GAGTGTGTTGGACACTCCACTGCGGGATAAGGTACGCGTGTTGGGGAGGA GCCGACTGCAACGGCGGCTGATGTTGCTGGGAACGACGACAGAAAGGGCT TTTTTCCGTTCTTTTTTTTTTCTAAAGAGAGCGCAGCCGAGCTCGACAGC AGCAGCGACAATCTGTTTGCGACGATCCCGCGCTTATCGATGATGCATCC AGAGCTCCCATGTTGTTTCGTGTCCCGACGCTCCCCGTCTCTCTTTGGCT GTTTGCTTGGTCGGTTGCGCTCGCTCGCTCGTTTGGTTGGCAGCACGAAG AAGGAGAAGGGGGCGCATCGGACGACGAAAAGGAGAAGAAGATGGAGGTA GAGGGACTAGAAAAGTCATTCGAGGCCGGAGTTAAGCTGGCGAGGGGGCA CCGCAGAGTCTGCTTAGAGTGCTTTGCGCCGGAAGGGACCCCGATACAGG CAAGCACACACGGGTCGCCGCCGATCGTGCATCTGTGCATGCTTAGGAGG TAGTCTGAAACTCACTCGGGTGGGCGCTAAGAGTTTGTACTGCTTTCCGT GACTATCTACGAAGCTTGTTTCGTGAATAGGCCGGGTCAGATCACAACTG CTGTTTACTTGCAATTGCTACTCATGGGTTTGCACTCCATCGCAGTTCAG GCTTCACGTGCTTCCGTCCTGTCACGATTACACTTGTGTTGTTGGTCTAG CAGGAAAAAGAACAAAAAAATAGGACCAAACGTCTCAGATGGTACCCATC ACGATTTTCCGCAACCCCTCTGATTTTTTATGAAGCAAGCCAGTTGGGCC ACGTCCTTTGCCACCGCTAATGCTCATTGCACAACCCACGGCTTGCCACG AAATCAGCAGGAAACCTCAACGCATTTGTAATCTGCGTCCGCAAGCAGTT TTCATGCCTTAGTTTCATGCTGAGTTGGATAAATGCTTCGCCATCGCAAC TGAAAACTCGTCGGTTGCGGTCACTTTTTAGCTCTTGAGACGCGTATTTG ACCGCTGAGTTGTGCCACCATAAAGTGTCCCTATTCTTCCAGAACTTGGA TGGTGTGCAGTTTTGCCGCTTACGTTGAACGTAAGAAGGTTTGGCATTTT TGGGATCCACCCTTTGACAGTCGAAGTTGGCCTGCTAATTTTGCCGAATC CAAGCCAAATCCGTTCTAAAATCAAGTTGTGTGTGTGTGTGTGCAGCGGG GAAAAAAAGACAATCCGACACGAAAAGTGTCTACCTCCAATGTTTTCAAC AAGTGCCACACCGACAGATCTTTAGGCCAAGGTTGTGCACCCGCAAAGTC TCCGAAATCGATCGTATGGTACCCCAATAAGCTGTGGCAAGTTTGTGATC AGCACTACAGCAGGAGCTGTAGCAAGATTACGTCATATCACACAGAAAAA TAGACTGTTTCTGGCGTCGTCAGGCGGACTCTTTGTCCCAAAAAAAAGAC GGCGTACCGAGCCCCCACCAACACAAGTGGATACCTACCTTCGCCGCCAC TGGCGTACACGCTGCCTCTTGACCCTCCACCCGCTTCTGTCGTGGGGAAT CACGTGCATGTACGTACCTTCATACAGGGAAGTCGCTTCTTCGTCGGCAG AAAAGGGGCCACTCTCGGGCGCCGCCAGACCAACACGATCGCCTTCTCCC ACGAGTCGGGCGGGACTGTGATGGGGATAGACGCATCTATATCGGGAGAG CACGCCAGGATCGTGTATGATGAGGATGGCGACTTCTTGCACATCATGGA CGGCACCCCTACCAAGGTGTGTGTTGCGGCGTGTGCAAAACATGTGCCCG TGAGAAAGCAAGACGAGGAGCAGGGGCTTAGAGGGAGCTTGCGCGGTATA TGTTTCTGTGAAACGAATGCGAGACTGAAGCCGCGCGTGCAACTGAGTTG GTACCCCTTGCCCCTCGCTAACGCTTGCAGTCACCCATTTGCCCTTCCCC CGCTGTTTTCCTCCCCCGAGGGAAGGCGTCTACAAACGGGACGTGGTTCC GGCTGAGCGGGATGCACAAGGAGAGCAGACCGTACCCCTTGTCCAACGGT TCCGAGATCCTCATTGGAACGGTGAGTGATCTTGAGAGAGGGGGAAACAT GCCTCAAAAGATCGGCATCGCGGTGTTGTAGATATGGAGTAAGCGAATTG GGGAGCAGGAAGGTGGCAGTTTCTATCTCACGAGACTTGCTCATATGCAT ACATCTTGCATTTCGCGGCCTAATCGAGGTCGAAAGCAAGCGGTGTGTGC GTACATTTTTTTTTTTTTTTTGGCCTCCTATGCATACCCCGGGAGATTTT CCGCATGGCATGGGTACAGGCATCATGTTGGGAGGAGAAGTGATTTGTTC CTCGACACGATACTGATGCTGTGTGGGAAGAATACCGCTGGCAGTAGTGA CCGTGAACGCCAGAGTCCGTGTGTACCTGCCACTGCTTTTGCAACGACTA TGGGAGTGTATGGTTGGGAAGGTCACATGTTGGCTTGGGTCGTGAAAAGA TGAAAAATGACATTTCTTGTTCAACGCCTCCCTGTGCAGCAACTGTGTAT TTTGTTCTCATAAAATCCCTCCAACTTGAACGTGCAATGGCTGAAAACTG AACAACAGGTTCGGTTCTCTGTGACGCTGGAAACCATGGTGGTTGAAAAG GAACTCACGGCCGATAATCGAAATCACTTCATTTCCCTCGCGAAGGAACA AGGCCATCGGTCCTCGCCTCTGTGGGGAGCGAGTAGAGAAAGCAATGGCC CCGTCGGGAGGGACGAAATGGACTCTATGTCGGGCCGGTGACCAGCTGAA TTACGTTGCTTACGTTGTTTTCCTGGCTCGTGTGTTGGTTCGTATTGGTT CTTCGAAAACCAAGAGGGTGTAGGGGTTTGCCGTGTACGGGTGGGTTGAG CGGTGATGGGAATGAGGTGGACGACTGACTATAATACTGTATGTGCGTTT CTTACGATTGTATGTTTTGTTTGCTTGGCTTCGAGTGCCAAGTGGGAGCG ATGGGCTCTACCCCACCATCTGGTTCGACATGTCACCTGTGACACCGGAT TTCCTGGGGGATCACCTCTGTTTTTGTTTTTTATTCGTTTGTGTTGACTC TCTGAGTCCTTTGTACCATGTTTTGTACCCCAGTGGGGTATCTGCTTGTG ACCACGAAAGTCGACCGCATCAGTTGGACCAGTACGGGCGTAGAAGGTAC TGAGAAGAGATCGGAACGGTTTTTTATGTGAAGACAAGATATGATGAAAT TATTGTCCACAACGTGCAGGAGAGGTGTGGTAGGTTCCGGACAATTGTCC TTTTGCCGGGGCTATGGGGCAAGGGAAGATGGGGGAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1101:51859..58845-

>mRNA_P-lacustris_contig1101.860.1 ID=mRNA_P-lacustris_contig1101.860.1|Name=mRNA_P-lacustris_contig1101.860.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3816bp|location=Sequence derived from alignment at P-lacustris_contig1101:51859..58845- (Pleurocladia lacustris SAG_25_93)
ATGTGTCCTCCCTCAGCTGGAACTATGGGATGCTCACATTTGTTCAATTT
TCTCGTTTTGCTGTCCTATCCTATCCTATCCTATCTCACGCGAAAGGTAC
GCGGGTCCGCCCTCCGGGATGAGTTCTCTTGTCCCATCACGCGTGAGCTC
ATGCGAGACCCGGTGATTGCTGCGGACGGTCACACCTACGACAGGGAGGC
CATCGAAATGTGGCTGAGAAACCATGACACCTCTCCTAAGATGTGTCCTC
CCTCAGCTGGAACTATGGGATGCTCACATTTGTTCAATTTTCTCGTTTTG
CTGTCCTATCCTATCCTATCCTATCTCACGCGAAAGGTACGCGGGTCCGC
CCTCCGGGATGAGTTCTCTTGTCCCATCACGCGTGAGCTCATGCGAGACC
CGGTGATTGCTGCGGACGGTCACACCTACGACAGGGAGGCCATCGAAATG
TGGCTGAGAAACCATGACACCTCTCCTAAGACTGGCCAGCCTATGGAGCA
ACTCTCGCTGGTGCCCAACCTGAACCTCAAGCGGCTGATCAAGGACCTCC
TTAACGAAGGGGGCGAGGGGCTCTACATGTACCGAGTGGACAGCGATGGT
GAAGGCGAAGGCGATGGCTCGAGTAGGGGTGGTCCCGAGCAAGAAGGCAG
AGGGGGAGGAGGAGGAGGAAGGCGAGAGAGGCAGGGGAATCGGGAATACC
GCTTCGCGCTTGTCGCCGAGCAGATCCTCGTACTCAAGACTGGCCAGCCT
ATGGAGCAACTCTCGCTGGTGCCCAACCTGAACCTCAAGCGGCTGATCAA
GGACCTCCTTAACGAAGGGGGCGAGGGGCTCTACATGTACCGAGTGGACA
GCGATGGTGAAGGCGAAGGCGATGGCTCGAGTAGGGGTGGTCCCGAGCAA
GAAGGCAGAGGGGGAGGAGGAGGAGGAAGGCGAGAGAGGCAGGGGAATCG
GGAATACCGCTTCGCGCTTGTCGCCGAGCAGATCCTCGTACTCAAGTGCC
TGGGCCCTACGGATTCCGACTGGAACGACAAGTCCTTTCGTGTGACGGAG
CGCGGGTGTGTTGGCGGTCGCAAGCAGCCGGCCATGCTGGCAGGAGCGGA
CTTTATGCAGTTCTCGGACGCCACTGTGAGCAGGCGCCACTTCGGAATCG
TCTTCGATAAGGAGTGCCTGGGCCCTACGGATTCCGACTGGAACGACAAG
TCCTTTCGTGTGACGGAGCGCGGGTGTGTTGGCGGTCGCAAGCAGCCGGC
CATGCTGGCAGGAGCGGACTTTATGCAGTTCTCGGACGCCACTGTGAGCA
GGCGCCACTTCGGAATCGTCTTCGATAAGGAGGAGAAACATTTTTCGCTG
TGCGACTTCGGAAGTGCAGGCGGGACCTTCGTTCGGCTTGCTTCAGGGGT
GCCCACACCCCTCTACCCCGGCATGATGATAATGCTCGGGAAGCACCAGG
AGAAACATTTTTCGCTGTGCGACTTCGGAAGTGCAGGCGGGACCTTCGTT
CGGCTTGCTTCAGGGGTGCCCACACCCCTCTACCCCGGCATGATGATAAT
GCTCGGGAAGCACCAGCTGGAGGTGACAAATGTCACCACTGACGACGAAA
TAAACGCGGTTGGCGCTGACGGTGCTTCCATCGCCTCGAATGACAAAGGC
GGCGACGCCGTATCGCGTGCTAGACCGCCAAGACCAGGGGATAACTCGGC
GGCGATGCGCACCAGAAGCAAGGCCGGCGGCAACGCGTCGGGCGTAAAAG
AAGGGGCCACGACAGACCAGGAGGAAAGCGGAGGTGGGCAGCGAGATCGC
GGCCGCCCGACCAGCGCCCATTCGGCCAAGTCTTCGTCCTCGAAGGTGGA
GGAGGAGGTTTCGGTGTTGAGGATCGGGGGAGGCATGACGGAAGCCGACG
GATTGTCTTCCGTGGGGGATGGCCCCAACGGCGTATTGCTGGTGGACAGT
ACGGAGCACCGGGGGAGGCAGGATAGCAGTAGGTCGCCGCTACCTCACGA
AAATGCGGCCGGCGGAGAGGACGATGCGAGTGTGTTGGACACTCCACTGC
GGGATAAGCTGGAGGTGACAAATGTCACCACTGACGACGAAATAAACGCG
GTTGGCGCTGACGGTGCTTCCATCGCCTCGAATGACAAAGGCGGCGACGC
CGTATCGCGTGCTAGACCGCCAAGACCAGGGGATAACTCGGCGGCGATGC
GCACCAGAAGCAAGGCCGGCGGCAACGCGTCGGGCGTAAAAGAAGGGGCC
ACGACAGACCAGGAGGAAAGCGGAGGTGGGCAGCGAGATCGCGGCCGCCC
GACCAGCGCCCATTCGGCCAAGTCTTCGTCCTCGAAGGTGGAGGAGGAGG
TTTCGGTGTTGAGGATCGGGGGAGGCATGACGGAAGCCGACGGATTGTCT
TCCGTGGGGGATGGCCCCAACGGCGTATTGCTGGTGGACAGTACGGAGCA
CCGGGGGAGGCAGGATAGCAGTAGGTCGCCGCTACCTCACGAAAATGCGG
CCGGCGGAGAGGACGATGCGAGTGTGTTGGACACTCCACTGCGGGATAAG
CACGAAGAAGGAGAAGGGGGCGCATCGGACGACGAAAAGGAGAAGAAGAT
GGAGGTAGAGGGACTAGAAAAGTCATTCGAGGCCGGAGTTAAGCTGGCGA
GGGGGCACCGCAGAGTCTGCTTAGAGTGCTTTGCGCCGGAAGGGACCCCG
ATACAGGCAAGCACACACGGCACGAAGAAGGAGAAGGGGGCGCATCGGAC
GACGAAAAGGAGAAGAAGATGGAGGTAGAGGGACTAGAAAAGTCATTCGA
GGCCGGAGTTAAGCTGGCGAGGGGGCACCGCAGAGTCTGCTTAGAGTGCT
TTGCGCCGGAAGGGACCCCGATACAGGCAAGCACACACGGTCGCTTCTTC
GTCGGCAGAAAAGGGGCCACTCTCGGGCGCCGCCAGACCAACACGATCGC
CTTCTCCCACGAGTCGGGCGGGACTGTGATGGGGATAGACGCATCTATAT
CGGGAGAGCACGCCAGGATCGTGTATGATGAGGATGGCGACTTCTTGCAC
ATCATGGACGGCACCCCTACCAAGTCGCTTCTTCGTCGGCAGAAAAGGGG
CCACTCTCGGGCGCCGCCAGACCAACACGATCGCCTTCTCCCACGAGTCG
GGCGGGACTGTGATGGGGATAGACGCATCTATATCGGGAGAGCACGCCAG
GATCGTGTATGATGAGGATGGCGACTTCTTGCACATCATGGACGGCACCC
CTACCAAGGCGTCTACAAACGGGACGTGGTTCCGGCTGAGCGGGATGCAC
AAGGAGAGCAGACCGTACCCCTTGTCCAACGGTTCCGAGATCCTCATTGG
AACGGCGTCTACAAACGGGACGTGGTTCCGGCTGAGCGGGATGCACAAGG
AGAGCAGACCGTACCCCTTGTCCAACGGTTCCGAGATCCTCATTGGAACG
GTTCGGTTCTCTGTGACGCTGGAAACCATGGTGGTTGAAAAGGAACTCAC
GGCCGATAATCGAAATCACTTCATTTCCCTCGCGAAGGAACAAGGCCATC
GGTCCTCGCCTCTGTGGGGAGCGAGTAGAGAAAGCAATGGCCCCGTCGGG
AGGGACGAAATGGACTCTATGTCGGGCCGGTGAGTTCGGTTCTCTGTGAC
GCTGGAAACCATGGTGGTTGAAAAGGAACTCACGGCCGATAATCGAAATC
ACTTCATTTCCCTCGCGAAGGAACAAGGCCATCGGTCCTCGCCTCTGTGG
GGAGCGAGTAGAGAAAGCAATGGCCCCGTCGGGAGGGACGAAATGGACTC
TATGTCGGGCCGGTGA
back to top