mRNA_P-lacustris_contig11.823.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig11.823.1
Unique NamemRNA_P-lacustris_contig11.823.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: D8LR34_ECTSI (Protein disulfide isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR34_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 7.220e-144
Identity = 240/370 (64.86%), Postives = 259/370 (70.00%), Query Frame = 1
Query:    1 VAPQNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGLWECRPPGGPRHGPGLTLMARRPPR*PQGRPGRSRRQGRVPRGLRRRHFRWALCAHRPEAV*QR-----QGLPCDGAQEAGGFARWGCAGGAAMISAQKRTLFMVRSNILRAFVELGFGEGEERDAEAGVKAEL 1095
            V  QNF S++DGSANVLLEFYAPWCGHCKKLAPEYEELG  FSKD DGI+IAKVD+ AH + A  + VT +PT+KWMPKGK++PSDAE VNAPRSADGLGKWIT+KTGV+ARKPAE PSAV DLTLETFDSI MDPTKH LVEFYAPWCGHCKSLAPVYEKLGK F+AET VVVAKVDAVEEK LG RFGVTGFPTLKYFPAGDGEAEAYG  RDL+S VEFLN KAGTSRTPDGGL       G        L +R     P      S  +     G        A  A       Q+      G      +   G          A ISAQKRTLFMVRSNILRAF E GFGEG E   E GV+ EL
Sbjct:   28 VTGQNFESVVDGSANVLLEFYAPWCGHCKKLAPEYEELGKQFSKD-DGIVIAKVDAVAHKDTAVPFDVTAFPTIKWMPKGKTAPSDAEMVNAPRSADGLGKWITDKTGVQARKPAEAPSAVLDLTLETFDSIVMDPTKHALVEFYAPWCGHCKSLAPVYEKLGKVFQAETSVVVAKVDAVEEKDLGGRFGVTGFPTLKYFPAGDGEAEAYGGGRDLKSFVEFLNDKAGTSRTPDGGLAGS---AGRLEVLDAVLASRSGLADPLAGLKASLEEAAAKAGYGEEGSDAAASAGHYARAAQKLSEKGNGYLAKELKRLEGLLGXXXXXXXATISAQKRTLFMVRSNILRAFKEFGFGEGGE--GETGVQGEL 391          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: W7TR80_9STRA (Protein disulfide isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR80_9STRA)

HSP 1 Score: 260 bits (664), Expect = 6.440e-78
Identity = 131/238 (55.04%), Postives = 162/238 (68.07%), Query Frame = 1
Query:    1 VAPQNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDG-EAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            + P NF  ++DGS NVL+EFYAPWCGHCK LAPEYE + G   K  DG++IAKVD+ A   L   + V G+PTLKW PKG ++P + E     R+AD +  W+  KTG+ +RK  +  SAV +LT   FDS+AMDPTK VLV F APWCGHCK+LAP YE + K F  E  VVVAKVDA + + L  RF V+G+PTLK+FP G+G E EAY   RD+   V FLN KAGT+ T  GGL
Sbjct:   22 LTPANFDQVVDGSQNVLVEFYAPWCGHCKTLAPEYE-IAGDVYKAGDGVVIAKVDADAERSLGERFDVKGFPTLKWFPKGSTAPEEYE---GGRTADTIVSWVNGKTGL-SRKVKKMASAVVELTDGNFDSLAMDPTKDVLVGFTAPWCGHCKTLAPKYEAVAKIFAGERDVVVAKVDATQYRDLASRFDVSGYPTLKFFPRGEGKEVEAYEHGRDVVDFVNFLNEKAGTAYTATGGL 254          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A176WRD3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WRD3_MARPO)

HSP 1 Score: 256 bits (654), Expect = 2.050e-76
Identity = 126/239 (52.72%), Postives = 158/239 (66.11%), Query Frame = 1
Query:    1 VAPQNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGLWE 717
            ++P NF   +  S   L+EFYAPWCGHCKKLAPEYE+LG  F K ++ +MI KVD   H  L   +GV+G+PTLKW P G   P D    +  R+ D L +++  + G RA K +  PS V  LT   FD++ +D +K VLVEFYAPWCGHCKSLAPVYE++  AF+ E+ VVVAK DA   + LGERFGV GFPT+K+FP    E   Y   RDLE  V++LN +AGT RTP GGL E
Sbjct:   32 LSPDNFDLEVGQSKGALVEFYAPWCGHCKKLAPEYEKLGATFKKTKN-VMIGKVDCDQHKPLCSKFGVSGFPTLKWFPAGSQEPKD---YSGGRTVDALTEFVNAEAGTRA-KLSTPPSDVVVLTPANFDAVVLDKSKDVLVEFYAPWCGHCKSLAPVYEEVATAFKKESNVVVAKCDADAHRELGERFGVHGFPTIKFFPKNQKEGVEYDADRDLEDFVKYLNEQAGTHRTPSGGLTE 265          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A0L0RWP5_ALLM3 (Protein disulfide-isomerase domain n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RWP5_ALLM3)

HSP 1 Score: 256 bits (653), Expect = 3.890e-76
Identity = 127/238 (53.36%), Postives = 152/238 (63.87%), Query Frame = 1
Query:    1 VAPQNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAE-AYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            + P NF S++ G  + L+EFYAPWCGHCK LAP YEEL   F      ++IAKVD+ AH EL   +GV G+PTLKW PKG ++P D +     RS + L  +I +KT + AR   + P+ V  LT  TFD I MDP KHVLV F APWCGHCK+L P YEKL K F  E  VV+A VDA     LGERFGV G+PT+KYFPAG  +A  AY   RD    VEFLN  AGT R+  G L
Sbjct:   25 LTPTNFDSIISGDKHALVEFYAPWCGHCKSLAPTYEELSTVFKHATKDLVIAKVDADAHRELGTRFGVQGFPTLKWFPKGSTTPEDYQ---GGRSLEDLASYIKDKTSINARIK-KVPTDVATLTSSTFDEIVMDPAKHVLVTFTAPWCGHCKNLKPTYEKLAKTFATEPNVVIANVDATAHPDLGERFGVQGYPTIKYFPAGKDKAPVAYEGGRDEADFVEFLNANAGTHRSAGGAL 258          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A8K1FKW4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKW4_PYTOL)

HSP 1 Score: 253 bits (645), Expect = 3.150e-75
Identity = 128/239 (53.56%), Postives = 151/239 (63.18%), Query Frame = 1
Query:    1 VAPQNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRAR--KPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            + P NF +++DGS NVL+EFYAPWCGHCK LAP YE +   F K  D I+IAKVD+ AH +LA  Y VTG+PTLKW PKG     D    +  R  D    ++ EK G   R  KP   PS V  L    FD+  +   KH LVEFYAPWCGHCKSLAP YE++GK F  E  V+VAKVDA    AL  R+GV+G+PTLKYF  G  + E Y   RD +S V FLN KAGT R  DGGL
Sbjct:   24 LTPDNFDTVVDGSKNVLVEFYAPWCGHCKNLAPTYEVIATSFKK-VDSIVIAKVDADAHKDLAQSYKVTGFPTLKWFPKGSIKEED---YSGGRGEDDFASFLNEKLGTNVRIIKP---PSFVAALGESDFDAEVIQSKKHALVEFYAPWCGHCKSLAPTYEEVGKIFSGEESVLVAKVDATAHSALASRYGVSGYPTLKYFAPGSDDPEDYKSGRDKQSFVTFLNEKAGTHRNVDGGL 255          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: I1HF62_BRADI (Uncharacterized protein n=3 Tax=Pooideae TaxID=147368 RepID=I1HF62_BRADI)

HSP 1 Score: 253 bits (645), Expect = 4.650e-75
Identity = 122/221 (55.20%), Postives = 151/221 (68.33%), Query Frame = 1
Query:   49 LLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            L+EFYAPWCGHCKKLAPEYE+LG  F K    +MIAKVD   H  +   YGV+GYPT++W PKG   P   E     R+A+ L +++ ++ G    K A  PS+V  LT ETFDS+ +D TK VLVEFYAPWCGHCK LAP+YEKL  AF+ + GVV+A VDA + K LGE++GVTGFPTLK+FP G+   E Y   RDL    +F+N K GTSR  +G L
Sbjct:   52 LVEFYAPWCGHCKKLAPEYEKLGASFKKARS-VMIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYE---GQRTAEALAEFVNKEGGTNV-KLATIPSSVVVLTPETFDSVVLDETKDVLVEFYAPWCGHCKHLAPIYEKLASAFKLDDGVVIANVDADKYKDLGEKYGVTGFPTLKFFPKGNKAGEDYDGGRDLGDFTKFINEKCGTSRDTNGQL 267          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: Q5EUD6_MAIZE (Protein disulfide isomerase n=20 Tax=Panicoideae TaxID=147369 RepID=Q5EUD6_MAIZE)

HSP 1 Score: 251 bits (641), Expect = 1.760e-74
Identity = 120/233 (51.50%), Postives = 152/233 (65.24%), Query Frame = 1
Query:   13 NFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            +F   +      L+EFYAPWCGHCKKLAPEYE+LG  F K +  ++IAKVD   H  +   YGV+GYPT++W PKG   P   E     RS + L +++  + G    K A  PS+V  LT ETFDSI +D TK VLVEFYAPWCGHCK LAP+YEKL   F+ + GVV+A +DA +   L E++GV+GFPTLK+FP G+   E Y   RDL+  V+F+N K GTSR P G L
Sbjct:   39 DFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYE---GQRSVEALAEFVNSEAGTNV-KIAAIPSSVVVLTSETFDSIVLDETKDVLVEFYAPWCGHCKHLAPIYEKLASVFKQDDGVVIANIDADKHTDLAEKYGVSGFPTLKFFPKGNKAGEDYDGGRDLDDFVKFINEKCGTSRDPKGHL 266          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A059A8W3_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059A8W3_EUCGR)

HSP 1 Score: 248 bits (632), Expect = 2.830e-74
Identity = 119/234 (50.85%), Postives = 154/234 (65.81%), Query Frame = 1
Query:   10 QNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            +NF   +      L+EFYAPWCGHCKKLAPEYE+LG  F K +  I+I KVD   H  +   YGV+GYPT++W PKG   P   E    PR+A+ L +++  + G    K A  PS+V  LT + F+ I +D TK VLVEFYAPWCGHCK+LAP YEK+  AF++E GVV+A +DA + K LGE++GV+GFPTLK+FP  + + E Y   RDL+  V F+N K GTSR   G L
Sbjct:   31 ENFDKEVGQDRAALVEFYAPWCGHCKKLAPEYEKLGSSFKKAKS-ILIGKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYE---GPRTAEALAEFVNNEGGTNV-KIAAVPSSVAVLTSDNFNEIVLDKTKDVLVEFYAPWCGHCKALAPTYEKVAAAFKSEDGVVIANLDADKYKDLGEKYGVSGFPTLKFFPKNNKDGEEYDGGRDLDDFVNFINEKCGTSRDGKGEL 259          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A2K1KP63_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KP63_PHYPA)

HSP 1 Score: 250 bits (639), Expect = 3.570e-74
Identity = 121/233 (51.93%), Postives = 153/233 (65.67%), Query Frame = 1
Query:   13 NFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            NF   + G    L+EFYAPWCGHCKKLAPEYE+LG   +  +  ++IAKVD   H  +   YG+ G+PT+KW PKG   P D    N  R+ D L +++  + G +  K +  PS V  L    FD I MD TK VLVEFYAPWCGHCKSLAPVYEK+  AF+ E  VVVA V+A   +ALG RFGV+G+PTLK+FP  + + E Y   RD+++ V FLN+KAGT+RT  GGL
Sbjct:   38 NFEQHVGGDKGALVEFYAPWCGHCKKLAPEYEKLGEALT-GQKSVLIAKVDCDDHKSVCSKYGIQGFPTIKWFPKGSLEPKD---YNGGRTTDALLEFVNNEAGTKG-KVSTPPSEVVVLDPTNFDKIVMDTTKDVLVEFYAPWCGHCKSLAPVYEKVAAAFKLENDVVVANVNADAHRALGSRFGVSGYPTLKFFPKNNKDGEDYDGGRDVDAFVTFLNKKAGTARTSSGGL 265          
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Match: A0A4Y7ILH8_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7ILH8_PAPSO)

HSP 1 Score: 250 bits (638), Expect = 4.190e-74
Identity = 119/234 (50.85%), Postives = 155/234 (66.24%), Query Frame = 1
Query:   10 QNFVSLLDGSANVLLEFYAPWCGHCKKLAPEYEELGGHFSKDEDGIMIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGLGKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWCGHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKYFPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGL 711
            +NF   +      L+EFYAPWCGHCKKLAPEYE+LGG+F K +  ++I KVD   H  + G YGV+GYPTL+W P+G   P   E    PR+A+ L +++  + G    K A  PS+V  LT E F+ I +D TK VLVEFYAPWCGHCKSLAP+YEK+  A++ E  VV+A +DA + K L ER+G++GFPTLK+FP G+   E Y   RD++  V F+N K GTSR   G L
Sbjct:   33 ENFEKQVGQDRGALVEFYAPWCGHCKKLAPEYEKLGGNFKKAKS-VLIGKVDCDEHKSVCGKYGVSGYPTLQWFPQGSLEPKKYE---GPRTAEALTEFVNTEAGTNV-KLATIPSSVVVLTGENFNEIVLDETKDVLVEFYAPWCGHCKSLAPIYEKVASAYKLEGDVVIANLDADKHKDLAERYGISGFPTLKFFPKGNKAGEDYDGGRDVDDFVSFINEKCGTSRDGKGQL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig11.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR34_ECTSI7.220e-14464.86Protein disulfide isomerase n=2 Tax=Ectocarpus Tax... [more]
W7TR80_9STRA6.440e-7855.04Protein disulfide isomerase n=2 Tax=Monodopsidacea... [more]
A0A176WRD3_MARPO2.050e-7652.72Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0L0RWP5_ALLM33.890e-7653.36Protein disulfide-isomerase domain n=2 Tax=Allomyc... [more]
A0A8K1FKW4_PYTOL3.150e-7553.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I1HF62_BRADI4.650e-7555.20Uncharacterized protein n=3 Tax=Pooideae TaxID=147... [more]
Q5EUD6_MAIZE1.760e-7451.50Protein disulfide isomerase n=20 Tax=Panicoideae T... [more]
A0A059A8W3_EUCGR2.830e-7450.85Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]
A0A2K1KP63_PHYPA3.570e-7451.93Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A4Y7ILH8_PAPSO4.190e-7450.85Uncharacterized protein n=2 Tax=Papaver somniferum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig11contigP-lacustris_contig11:348569..353366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue3.8e-87
Seed eggNOG ortholog2880.D8LR34
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionprotein disulfide isomerase
Ec32 orthologEc-06_004520.1
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Exons6
Model size1787
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig11.823.1prot_P-lacustris_contig11.823.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig11 349570..352537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.5872774-UTR-P-lacustris_contig11:348568..3495691622815384.5872774-UTR-P-lacustris_contig11:348568..349569Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 348569..349569 -
1693493513.3409612-UTR-P-lacustris_contig11:348568..3495691693493513.3409612-UTR-P-lacustris_contig11:348568..349569Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 348569..349569 -
1622815384.7501998-UTR-P-lacustris_contig11:352537..3526081622815384.7501998-UTR-P-lacustris_contig11:352537..352608Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 352538..352608 -
1693493513.4017394-UTR-P-lacustris_contig11:352537..3526081693493513.4017394-UTR-P-lacustris_contig11:352537..352608Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 352538..352608 -
1622815384.7632875-UTR-P-lacustris_contig11:353290..3533661622815384.7632875-UTR-P-lacustris_contig11:353290..353366Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 353291..353366 -
1693493513.4094837-UTR-P-lacustris_contig11:353290..3533661693493513.4094837-UTR-P-lacustris_contig11:353290..353366Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 353291..353366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.6011608-CDS-P-lacustris_contig11:349569..3496771622815384.6011608-CDS-P-lacustris_contig11:349569..349677Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 349570..349677 -
1693493513.3518653-CDS-P-lacustris_contig11:349569..3496771693493513.3518653-CDS-P-lacustris_contig11:349569..349677Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 349570..349677 -
1622815384.6117706-CDS-P-lacustris_contig11:350278..3504281622815384.6117706-CDS-P-lacustris_contig11:350278..350428Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 350279..350428 -
1693493513.3606575-CDS-P-lacustris_contig11:350278..3504281693493513.3606575-CDS-P-lacustris_contig11:350278..350428Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 350279..350428 -
1622815384.62199-CDS-P-lacustris_contig11:351148..3513281622815384.62199-CDS-P-lacustris_contig11:351148..351328Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 351149..351328 -
1693493513.3695507-CDS-P-lacustris_contig11:351148..3513281693493513.3695507-CDS-P-lacustris_contig11:351148..351328Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 351149..351328 -
1622815384.6349878-CDS-P-lacustris_contig11:351837..3520261622815384.6349878-CDS-P-lacustris_contig11:351837..352026Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 351838..352026 -
1693493513.378614-CDS-P-lacustris_contig11:351837..3520261693493513.378614-CDS-P-lacustris_contig11:351837..352026Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 351838..352026 -
1622815384.7118523-CDS-P-lacustris_contig11:352525..3525371622815384.7118523-CDS-P-lacustris_contig11:352525..352537Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 352526..352537 -
1693493513.3917136-CDS-P-lacustris_contig11:352525..3525371693493513.3917136-CDS-P-lacustris_contig11:352525..352537Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 352526..352537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig11.823.1

>prot_P-lacustris_contig11.823.1 ID=prot_P-lacustris_contig11.823.1|Name=mRNA_P-lacustris_contig11.823.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=213bp
MIAKVDSQAHAELAGMYGVTGYPTLKWMPKGKSSPSDAETVNAPRSADGL
GKWITEKTGVRARKPAETPSAVFDLTLETFDSIAMDPTKHVLVEFYAPWC
GHCKSLAPVYEKLGKAFEAETGVVVAKVDAVEEKALGERFGVTGFPTLKY
FPAGDGEAEAYGDARDLESLVEFLNRKAGTSRTPDGGLWECRPPGGPRHG
PGLTLMARRPPR*
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mRNA from alignment at P-lacustris_contig11:348569..353366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig11.823.1 ID=mRNA_P-lacustris_contig11.823.1|Name=mRNA_P-lacustris_contig11.823.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4798bp|location=Sequence derived from alignment at P-lacustris_contig11:348569..353366- (Pleurocladia lacustris SAG_25_93)
GTCGCTCCGCAGAACTTCGTGAGCTTGTTGGATGGGAGCGCCAACGTTCT CCTCGAGTTCTACGCCCCGTGGTGTGGTAAGTCGCGTTTTGACTCCTCTC AAATTGTGAGGAAGCAAATTGCCTATAGCTTCCGCGGTGGTGAACATCTG AGCGTTCGCTGCACGACACTGCTGTGCTGACGGTGAACAAGTGTTGTTCA GGCCCTTCTCGATCCTATTTCTGTATCGAGCAGTGGATGGGGTAGGTGGA GCATCGCTGAGGTTAACTTTTCCACTGGGCTGCTAAGAAAGGCGAGCGTT TCGTCCACGCGTTGATGCCACATGAAGAAGCAAGTATGTGTCTATGTTCT CGTCGCTCTTGTTGTTTTGGAGCTGTTTGTAGTTTTAGCAATCTGCTCGG GTTTTTGGTCTCCTCCCTTCCGGTATTGCGGAGGCAAGAGGAGAGAACGC GGGCGGCAACGAGGTGTCGTGCGTCCTGCTCCTAAAGCAGTCTCCTCAAC AGCGTTTCGGACTTAACGCCGTTTTCGCTGCCGTTCCGTGTTCCGCTTCA AGAATAACGCCTTCTTTTGGAAGCTGAAAACCCGGGCGGGAAATTTAGCG AACGCGCTGGCACACTTCCGCAACAACCACAACAATCTCATTCTAGTCCG TAGAACTACTACGGTGAATTGTGTACAAGCGTGTTCTGCGATGACGTGCA CCGACCCGAGTCTCAATCTCACCCCTCACTCTCTCTCCTCGCCCTGTTTC CCGCACAGGCCACTGCAAGAAGCTAGCGCCGGAGTACGAGGAGCTCGGTG GGCACTTTAGCAAGGACGAAGATGGGATCATGATCGCCAAGGTTTGTGTG TATACCTGCATGTGTGAGTGAGAGAGAGAGAGAGGTTGTCGCCGGGTCAT GGCGGAGAATCTCCAAGGAGAGAGGGAGGAATGCCACTTTGCGAGTGAGC GCGCGATCCGCACATGGGGCAGCGGGGGCGGGTGGATGGATCGGGGTGGC GCACATAAGCGGAAAGACAAACTCTCCTGAAGAGTTAGGATGATCAGGTA GGGCGATGAAAGAGCGGCTGTTGGTTGAATCCCCTTCCCTTGTGATAGCA TGTGCTGGTTTGTACTAACGCGTCTCGTGTCTCTCCCATAACGGTAGTCT GCCCTCGGACGAGGTGTTTGTGCAGGGGAGGAGGGGGGCGGCAGAAGCAA CAGGTGGAAGAAACTCCGTTGCGTCGTGCTGTACAACGGTTCTGGCAACA CGAGTGGTCTCGAGACCAATCGCCTCCGTCTGGGCGTATGAATTACCCCC GTCCAACCACATCTGATGGCATTTTTGTAACATTCACCAGGTGGACTCGC AGGCGCATGCAGAGTTAGCCGGGATGTATGGCGTGACGGGGTACCCGACG CTCAAGTGGATGCCTAAGGGGAAGTCTTCCCCGTCGGATGCGGAGACGGT CAACGCGCCGAGATCGGCGGACGGGCTCGGGAAGTGGATCACCGAGAAGA CAGGAGTCCGGGCTAGAAAACCCGCAGAGGTTAGCAACAGAGCGGTGACC TACGTTTGACCCCGGCGGTTGAGGCCTGTAGAATACAGAAAGTCAATAGT GAAAGGGGGAGTATTTCACGTGTAGCTTATCTGCCTCTTGTGTCAAGATC TTGGTACAGTTCAGGAAGGAATTGAGGCTTGACTTTCCTAAGCCTCGGCA CTAGCTCAGATTGTGACGATAAGAACATTGACACCGAAATCTAGGCTGCT GTCAGGTAGTCGGAACACGATTTAACCCGGGCCTCGCCGACGTGAAAGGG GTTGTGGCTTCTTGCACGTATAGCCTGTTTTGCCCGCCGCCGTAGAAGCC GCCCAGCATGCGTGTGTGGGTAAGATGCTACGGCAAGGGCCTGTATGGTA GATTCCGCCAAATCACGTGTCCTGCTCTTACGCACAGCTCGCAAGTGACA TGCTTTTCTAACGAGCTGCTCATCCCCCACCCGCCCTCCCCCTCCCCCAT GAAAATAACTCGGGAAAACGTATTGAAAAAATTGGAAGACTCCGTCGGCC GTTTTTGACCTGACTCTGGAGACGTTCGATTCCATCGCGATGGACCCGAC CAAGCACGTGCTCGTCGAGTTCTACGCGCCATGGTGCGGGCACTGCAAGT CTCTTGCCCCCGTGTACGAGAAGCTCGGGAAAGCCTTCGAGGCGGAGACC GGCGTCGTCGTAGCGAAGGTACGGCATGTGTTGCCTTAGCCGTGGCGCCC CACCTCCAACCCCCACCCCCGCTCCGACCCTTGCCTGTTGGCTCCCCTCT TCTGTTTCATGGGTTTTTGCGAAGCCGTCATCTTCTTTCCATGCATTTTT TCTCCCGCGCTCTTTCGCAACTTGCGCATGTGGCCAATCAGAGATTAGAA CGCGTACATTTGGAAAGTATGGGTGCAAAAAAAAAAAACACGCACGAAAA GAGGGCAGGAATCTTGACGAGAGGAGGCATGGCCGATTGTATTGCACTAG GCTAGAGCGAGAAAATCGGTAGCCAATTAAGGCAGGAGGGCGGATGGGGG GCCTCAAGGAGAGGAACCCTTCTGTGTAACCCAGGCTGGGTGCTAACCCT ACAATCACCGAAAGGCGTAAGAAAGGCTTAGCGTCCAGAATAGGTGAGAG GCAAAAAAAAAAACATGCGGACGGTGAGCGCCGCAAGAGGCCCGTAAGGA AGTATGTGAAATATGGCAAAAACCTTATCGAGTTCACAAATGTTGTCGAT GACAACCTGGGGTCAAAATGTTGCTCCGTCTCGCTGGGGATGCGTGGTCA ACGGCCAAACGTCTGAGGCAAGCAGCAAGTAGGTGCAACCCCACATCGAC CCTCTCCCACCATCGCCGACTCCATCGCTGATATTGCCACCCGCCGCTTT CGGCTTGCCGCGCATGCCGCACAAACAACGAATACCAGGTAGACGCGGTA GAAGAGAAGGCACTCGGCGAGCGATTCGGCGTCACCGGTTTTCCGACGCT CAAGTACTTCCCAGCGGGGGATGGCGAGGCGGAGGCGTACGGCGATGCTC GAGACCTCGAGTCCCTCGTGGAGTTCCTCAATAGAAAGGTCAGGTGCTTT TTCGGTGAACTGAAAAAAACAGTGCAGTTGTTCAATCTCACTCCTGGTTT CTGGTGGTCTTTGTCGTTCATTCGTACTCGGTACGAAGTGGGTGAAACGC TTTGTCCAGAGTGGAGGGTGCGGCTGACTTGATGGGGAGCACTGCGCGCT TGGTTGGTTTCAATGGCTACAGGTTACAGCCAGCGCTCTCTCTATAACCG GATTCCCGCGAATCCCCGCCATAACAGAACCTCTTTTATCGAAGTTAACC ATCAACCTTCAGTTAAGTTCCTCTCCCCACTTTCTGCTCCGTCCTCGTCG AATTCCCCTTCCTAGATCCACCGCCGCAAGAAGGTATCTATTTTCGCATA ATTTAGGCGTCCCTAATACCCTAGTGAATGGATCCACAGCAAGGACACGA ATCGAGCCTGTGACCTTTTCTGTGAAATTAGCTTCCTACATATGTGTGCA CCCGCAACGACGACGGCAACAACAACAACATCATCACCACCACCACCACC ACCACCACCACCGACAACGCATGGAGAGTTGAGGCTCACTGAAACGAAGT TGCTTCTTCGTGATTGTTTCTGGGATGAACAACAAACAGGCGGGGACGTC CCGGACCCCGGACGGAGGCCTCTGGGAGTGCCGGCCGCCTGGAGGTCCTC GACATGGTCCTGGCCTCACGCTCATGGCTCGCCGACCCCCTCGTTGACCT CAAGGCCGTCCTGGAAGAAGCCGTCGCCAAGGCAGGGTACCCCGAGGGCT CCGACGCCGCCACTTTCGCTGGGCACTATGCGCGCACCGCCCAGAAGCTG TCTGACAAAGGCAAGGGTTACCTTGCGATGGAGCTCAAGAGGCTGGAGGG TTTGCTCGGTGGGGGTGCGCAGGGGGCGCCGCTATGATCAGCGCACAGAA GCGGACGCTATTTATGGTCCGGAGTAATATTTTGCGCGCCTTTGTGGAGT TAGGATTCGGGGAGGGAGAAGAAAGAGATGCGGAGGCAGGGGTGAAGGCG GAGCTTTAATTTTGTTGTTTTGTTTTTGTGTGTGTGTTGGAGATGATAAG AAAAGTTGTTGTTTTTTGGTGCCTGGGGCTCATCACCTGTGGCTTGGAGG TTTTTGCTCAATTATGATTAGGTCTGGTCGACCGCCCCATTTAAGCCTGG TCAGCGATGCATGCGTTCTCGTTTTTGGCTGGCTGCCAGAAGTTCCGTAC ACTGCATTGTAGGCGCTTGATTTCGTGATGGAGTTATACATGGCTGTTGG TGGCGATGTTTGTTGTTTACAGCACTTCTTCCTGCTGAAATTGCGCTGGC GAGTCTCAGGCTGGGAGACATGAGTGCCTTCATGTTATCAAGTGCCAGGT AACCGGTTACGTAGCATATATATTTCGACACCGTCGTCTAAGACCGTTCC CGGATGACATACTACGCGGACGAGTCTGTTTTTTCGTGGAGCATGTTTGG GACATTGTGGTGAATTCCCAGGATGTGGCACGAGAGGCTGACTCCCGCCG ACGCTAGTCAAGTGCAATATGCCTCCAGGATATTGTTGCTGCAGAAGATC CCGCAGAGGTACAGCGGGACCTCTCAGAAGATTTGTGCGAGATGTTGTAA ACGAAGCCAACACCGGATGCGGCACACAGATTGACCGATGGTGTCCCGGG AAGATGATGGTACTATCCACGGGAAAGCAAGGATAACAAAGATGCCTG
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Coding sequence (CDS) from alignment at P-lacustris_contig11:348569..353366-

>mRNA_P-lacustris_contig11.823.1 ID=mRNA_P-lacustris_contig11.823.1|Name=mRNA_P-lacustris_contig11.823.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1278bp|location=Sequence derived from alignment at P-lacustris_contig11:348569..353366- (Pleurocladia lacustris SAG_25_93)
ATGATCGCCAAGATGATCGCCAAGGTGGACTCGCAGGCGCATGCAGAGTT
AGCCGGGATGTATGGCGTGACGGGGTACCCGACGCTCAAGTGGATGCCTA
AGGGGAAGTCTTCCCCGTCGGATGCGGAGACGGTCAACGCGCCGAGATCG
GCGGACGGGCTCGGGAAGTGGATCACCGAGAAGACAGGAGTCCGGGCTAG
AAAACCCGCAGAGGTGGACTCGCAGGCGCATGCAGAGTTAGCCGGGATGT
ATGGCGTGACGGGGTACCCGACGCTCAAGTGGATGCCTAAGGGGAAGTCT
TCCCCGTCGGATGCGGAGACGGTCAACGCGCCGAGATCGGCGGACGGGCT
CGGGAAGTGGATCACCGAGAAGACAGGAGTCCGGGCTAGAAAACCCGCAG
AGACTCCGTCGGCCGTTTTTGACCTGACTCTGGAGACGTTCGATTCCATC
GCGATGGACCCGACCAAGCACGTGCTCGTCGAGTTCTACGCGCCATGGTG
CGGGCACTGCAAGTCTCTTGCCCCCGTGTACGAGAAGCTCGGGAAAGCCT
TCGAGGCGGAGACCGGCGTCGTCGTAGCGAAGACTCCGTCGGCCGTTTTT
GACCTGACTCTGGAGACGTTCGATTCCATCGCGATGGACCCGACCAAGCA
CGTGCTCGTCGAGTTCTACGCGCCATGGTGCGGGCACTGCAAGTCTCTTG
CCCCCGTGTACGAGAAGCTCGGGAAAGCCTTCGAGGCGGAGACCGGCGTC
GTCGTAGCGAAGGTAGACGCGGTAGAAGAGAAGGCACTCGGCGAGCGATT
CGGCGTCACCGGTTTTCCGACGCTCAAGTACTTCCCAGCGGGGGATGGCG
AGGCGGAGGCGTACGGCGATGCTCGAGACCTCGAGTCCCTCGTGGAGTTC
CTCAATAGAAAGGTAGACGCGGTAGAAGAGAAGGCACTCGGCGAGCGATT
CGGCGTCACCGGTTTTCCGACGCTCAAGTACTTCCCAGCGGGGGATGGCG
AGGCGGAGGCGTACGGCGATGCTCGAGACCTCGAGTCCCTCGTGGAGTTC
CTCAATAGAAAGGCGGGGACGTCCCGGACCCCGGACGGAGGCCTCTGGGA
GTGCCGGCCGCCTGGAGGTCCTCGACATGGTCCTGGCCTCACGCTCATGG
CTCGCCGACCCCCTCGTTGAGCGGGGACGTCCCGGACCCCGGACGGAGGC
CTCTGGGAGTGCCGGCCGCCTGGAGGTCCTCGACATGGTCCTGGCCTCAC
GCTCATGGCTCGCCGACCCCCTCGTTGA
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