mRNA_P-lacustris_contig1097.786.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1097.786.1
Unique NamemRNA_P-lacustris_contig1097.786.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1097.786.1 vs. uniprot
Match: A0A6H5KSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.200e-24
Identity = 66/120 (55.00%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:    4 AALQRRALEAMSKPLPDSKSTLEMCESVKALTKAVVSKKLLEEEEAERKPWKEKVWAKESKLRSLDRRGKGESEEAHQLEEELLELYDNPVVAPLXXXXXXXXXXXXXVTPMKASPSLAG 363
            AAL+RRA EA+S P  DSKST E+ ESVKALT+AVVSK+LL+++ AER  WKE V A E KL   ++RGKG + EA  LE+ LL +YD PVVAPL              +P  A+PSLAG
Sbjct:  252 AALERRAFEALSAPPEDSKSTKELVESVKALTRAVVSKELLDQDAAERARWKENVGAMEKKLELYEKRGKGNTPEAQDLEKALLAMYDAPVVAPLPVAAPTLD------SPTSATPSLAG 365
[Close]
BLAST of mRNA_P-lacustris_contig1097.786.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.080e-23
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    4 AALQRRALEAMSKPLPDSKSTLEMCESVKALTKAVVSKKLLEEEEAERKPWKEKVWAKESKLRSLDRRGKGESEEAHQLEEELLELYDNPVVAPL 288
            A L+RRALEA+S P  DSKS+LE+ ESVKALT+AVVSK+LL++E+AER  W E+V A ESKL    + GKG + EA  L+EELL  YDNPVVAPL
Sbjct:  394 AVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRAMESKLALWGKMGKGSTAEAQALQEELLHAYDNPVVAPL 488
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1097.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ3_9PHAE5.200e-2455.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J557_9PHAE2.080e-2364.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1097contigP-lacustris_contig1097:16468..16831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.9672549-CDS-P-lacustris_contig1097:16467..168301622815372.9672549-CDS-P-lacustris_contig1097:16467..16830Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1097 16468..16830 +
1693493507.7208118-CDS-P-lacustris_contig1097:16467..168301693493507.7208118-CDS-P-lacustris_contig1097:16467..16830Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1097 16468..16830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1097.786.1prot_P-lacustris_contig1097.786.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1097 16468..16830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1097.786.1

>prot_P-lacustris_contig1097.786.1 ID=prot_P-lacustris_contig1097.786.1|Name=mRNA_P-lacustris_contig1097.786.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=121bp
IAALQRRALEAMSKPLPDSKSTLEMCESVKALTKAVVSKKLLEEEEAERK
PWKEKVWAKESKLRSLDRRGKGESEEAHQLEEELLELYDNPVVAPLPVAA
PPAVAAPPVVTPMKASPSLAG
back to top

mRNA from alignment at P-lacustris_contig1097:16468..16831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1097.786.1 ID=mRNA_P-lacustris_contig1097.786.1|Name=mRNA_P-lacustris_contig1097.786.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=364bp|location=Sequence derived from alignment at P-lacustris_contig1097:16468..16831+ (Pleurocladia lacustris SAG_25_93)
ATCGCTGCTCTGCAGCGCCGTGCCTTGGAGGCCATGTCCAAGCCCCTCCC
CGACTCCAAGAGTACGCTGGAAATGTGCGAAAGCGTGAAAGCGCTCACGA
AGGCTGTCGTGAGCAAGAAGCTGCTCGAAGAAGAGGAGGCTGAGCGTAAG
CCCTGGAAGGAGAAGGTCTGGGCGAAGGAGAGCAAGCTGCGGTCATTGGA
TAGGAGGGGGAAGGGGGAATCTGAAGAGGCACATCAGTTGGAAGAAGAGC
TCCTCGAACTGTACGATAACCCCGTGGTCGCCCCGCTGCCTGTGGCAGCT
CCACCGGCTGTGGCAGCCCCACCGGTAGTCACTCCCATGAAAGCATCTCC
AAGCTTGGCTGGAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1097:16468..16831+

>mRNA_P-lacustris_contig1097.786.1 ID=mRNA_P-lacustris_contig1097.786.1|Name=mRNA_P-lacustris_contig1097.786.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=726bp|location=Sequence derived from alignment at P-lacustris_contig1097:16468..16831+ (Pleurocladia lacustris SAG_25_93)
ATCGCTGCTCTGCAGCGCCGTGCCTTGGAGGCCATGTCCAAGCCCCTCCC
CGACTCCAAGAGTACGCTGGAAATGTGCGAAAGCGTGAAAGCGCTCACGA
AGGCTGTCGTGAGCAAGAAGCTGCTCGAAGAAGAGGAGGCTGAGCGTAAG
CCCTGGAAGGAGAAGGTCTGGGCGAAGGAGAGCAAGCTGCGGTCATTGGA
TAGGAGGGGGAAGGGGGAATCTGAAGAGGCACATCAGTTGGAAGAAGAGC
TCCTCGAACTGTACGATAACCCCGTGGTCGCCCCGCTGCCTGTGGCAGCT
CCACCGGCTGTGGCAGCCCCACCGGTAGTCACTCCCATGAAAGCATCTCC
AAGCTTGGCTGGAATCGCTGCTCTGCAGCGCCGTGCCTTGGAGGCCATGT
CCAAGCCCCTCCCCGACTCCAAGAGTACGCTGGAAATGTGCGAAAGCGTG
AAAGCGCTCACGAAGGCTGTCGTGAGCAAGAAGCTGCTCGAAGAAGAGGA
GGCTGAGCGTAAGCCCTGGAAGGAGAAGGTCTGGGCGAAGGAGAGCAAGC
TGCGGTCATTGGATAGGAGGGGGAAGGGGGAATCTGAAGAGGCACATCAG
TTGGAAGAAGAGCTCCTCGAACTGTACGATAACCCCGTGGTCGCCCCGCT
GCCTGTGGCAGCTCCACCGGCTGTGGCAGCCCCACCGGTAGTCACTCCCA
TGAAAGCATCTCCAAGCTTGGCTGGA
back to top