mRNA_P-lacustris_contig1096.780.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1096.780.1
Unique NamemRNA_P-lacustris_contig1096.780.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1096.780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1096contigP-lacustris_contig1096:6272..6752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1096.780.1prot_P-lacustris_contig1096.780.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1096 6373..6708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.636716-UTR-P-lacustris_contig1096:6271..63721622815371.636716-UTR-P-lacustris_contig1096:6271..6372Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1096 6272..6372 +
1693493507.0710766-UTR-P-lacustris_contig1096:6271..63721693493507.0710766-UTR-P-lacustris_contig1096:6271..6372Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1096 6272..6372 +
1622815371.664756-UTR-P-lacustris_contig1096:6708..67521622815371.664756-UTR-P-lacustris_contig1096:6708..6752Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1096 6709..6752 +
1693493507.090623-UTR-P-lacustris_contig1096:6708..67521693493507.090623-UTR-P-lacustris_contig1096:6708..6752Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1096 6709..6752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.6512272-CDS-P-lacustris_contig1096:6372..67081622815371.6512272-CDS-P-lacustris_contig1096:6372..6708Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1096 6373..6708 +
1693493507.0795245-CDS-P-lacustris_contig1096:6372..67081693493507.0795245-CDS-P-lacustris_contig1096:6372..6708Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1096 6373..6708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1096.780.1

>prot_P-lacustris_contig1096.780.1 ID=prot_P-lacustris_contig1096.780.1|Name=mRNA_P-lacustris_contig1096.780.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=112bp
MPQLRNYGRKIRRTECLDTQTRQHSSRAQRSSPQIDVPHERELIAWRRTP
GQPNPESACFFSCKNFTLVLRAQQLSCFLVEASCATAFASRPDELMPAST
APPGPHCMPCR*
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mRNA from alignment at P-lacustris_contig1096:6272..6752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1096.780.1 ID=mRNA_P-lacustris_contig1096.780.1|Name=mRNA_P-lacustris_contig1096.780.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=481bp|location=Sequence derived from alignment at P-lacustris_contig1096:6272..6752+ (Pleurocladia lacustris SAG_25_93)
CCTAGCTGTCGGGCTGATGGCTAGTGTCAATTGGTAAGCAGCGGGACTCG
CAGGAGCAGCAGCAGCAGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGT
TATGCCGCAGCTGAGAAACTATGGAAGAAAAATAAGAAGGACAGAGTGTC
TCGATACACAGACGAGACAACACTCGTCAAGGGCTCAGCGCTCGAGTCCT
CAGATCGACGTTCCTCATGAGCGGGAGCTAATTGCTTGGCGAAGAACACC
CGGTCAACCCAATCCTGAGAGCGCTTGTTTTTTTTCTTGCAAGAATTTTA
CGTTGGTTTTGCGCGCACAACAACTTTCTTGTTTCTTGGTGGAAGCCTCT
TGTGCAACCGCCTTCGCTTCGCGGCCTGACGAGTTAATGCCTGCGAGCAC
AGCACCTCCCGGCCCGCATTGCATGCCTTGTAGATGAGTTTACCTGCCCC
GGTTGACGGGGGGCCGGTTCGCGTTTCCCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1096:6272..6752+

>mRNA_P-lacustris_contig1096.780.1 ID=mRNA_P-lacustris_contig1096.780.1|Name=mRNA_P-lacustris_contig1096.780.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=672bp|location=Sequence derived from alignment at P-lacustris_contig1096:6272..6752+ (Pleurocladia lacustris SAG_25_93)
ATGCCGCAGCTGAGAAACTATGGAAGAAAAATAAGAAGGACAGAGTGTCT
CGATACACAGACGAGACAACACTCGTCAAGGGCTCAGCGCTCGAGTCCTC
AGATCGACGTTCCTCATGAGCGGGAGCTAATTGCTTGGCGAAGAACACCC
GGTCAACCCAATCCTGAGAGCGCTTGTTTTTTTTCTTGCAAGAATTTTAC
GTTGGTTTTGCGCGCACAACAACTTTCTTGTTTCTTGGTGGAAGCCTCTT
GTGCAACCGCCTTCGCTTCGCGGCCTGACGAGTTAATGCCTGCGAGCACA
GCACCTCCCGGCCCGCATTGCATGCCTTGTAGATGAATGCCGCAGCTGAG
AAACTATGGAAGAAAAATAAGAAGGACAGAGTGTCTCGATACACAGACGA
GACAACACTCGTCAAGGGCTCAGCGCTCGAGTCCTCAGATCGACGTTCCT
CATGAGCGGGAGCTAATTGCTTGGCGAAGAACACCCGGTCAACCCAATCC
TGAGAGCGCTTGTTTTTTTTCTTGCAAGAATTTTACGTTGGTTTTGCGCG
CACAACAACTTTCTTGTTTCTTGGTGGAAGCCTCTTGTGCAACCGCCTTC
GCTTCGCGGCCTGACGAGTTAATGCCTGCGAGCACAGCACCTCCCGGCCC
GCATTGCATGCCTTGTAGATGA
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